CmoCh07G008230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G008230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	AAA-type ATPase family protein
Location	Cmo_Chr07 : 3837875 .. 3839339 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACCTCCGAAATAGGTTCCAAAGTGAATTGTCGGAAGTGGAAAATGTGTTCAATATATCAGAGGAAACTAAATTTTGATTTCTCAAATTTAGAGTTTTAAATAATAAATTAAAAAAAATTATTTAATATTTTTAATTTAAAATATATTTATTAATTAAATTTTAAATTTTGTTCTATCAAATCTTTAATTTATAGTTAAAAAATATATATATATATATATATATATATATTCACTTTTTCTTTTTTTCATACACAAAAACCTCTGATAAAACTTCATTCAGTACGACCACCGTTCGTCTGTTTCCTCACGAAGGTGAGAAGCGCGCCAGACAACCAGAAAGAAGAGTAGAAGGCGTTCTCAAATGCTGGAATAATGATGTTTATGGCATCAAACGCACTTGATTCATCCAATTTTATCATCCTGTTCTTCCCACTGCTTCATCTCTTTGTCGAATTAAGCTAGTTTCATCCTGTTCTTCATCGTGTAGCAATCATGGTTCAGCTACCAAAGATCGCTCCCGAAACCGCATTTCTACTTTCCAGAAGTTCTGTAATCATCGAGTTTTCACTTCAAAAGCTTCAAGTTCGGACACGGATGCGGTGGTAGCGTCCACAAATGTGGAGGAAGACGTCGAGTCTGCTCAGCTATTCGAGGTTTTTCCTCATTTATGCCTTTAAATTTGGATTGATGTTTATAAATGAGATATATGAGAACATCAAGAGTAATTTAATGTTCGCACGCATTTTACTGAATATGTGGAAGAGGCTGACATGTTACTTGACGTTGAACACGAGAGAAGTGGTCTCCAGCTCCTGAAATTGAAAGTTATGTTCAGGAAACGAACTTCTACTTCACGATTAAAAGTAGCATTGCGTGGAAGGCGTTTGATGCAATAATCGTTCTGTTTGTGGTCTTTAATTCTGCAATGACTCCGTTTGTTGAGCAGACACCGTCGTTTCTAATGAGAATCAATAGATTAGTCATATGTTTGGCTGTCAGCGATTCAACGCGTGTCTGCACATATGTTTATCAACAATTTAAGAACTTCTTTCCTAGGTTTAGCCGATACTGATTTGATTCTCGAACTTTTTTCTTAATCTCATGTATGCGAGTCTTGAGTTTTTCAGAAATTAAAGGATGCTGAGCGACAACGGGTAAACAAGTTGAAAGAGCTTCAGAGGAAGGTGAATTTGCAATTAGAGAGGCAGCTTGTAATGGCTTCTAGTTGGTAGGGCCTTACTGACCATGCGGGGAAAATTAAAGGGAACTGAAAGAGATCCCGAGAACTCGCACAAAATTAATTTGAGTGATTGCAAGCAATGTCCAGTTCATTGAGTACTCAAATTATGGCCAAACAATGTCAGGTAGTCTCAGTACATTCTCTTTATATTTTAGAACGCGTGCACATTTTTCTTGTTTAGTTTATTTAGAAGCAAGAAAAAGGAAAAAAGAAAACAAA

mRNA sequence

ATGCTTACCTCCGAAATAGCTACCAAAGATCGCTCCCGAAACCGCATTTCTACTTTCCAGAAGTTCTGTAATCATCGAGTTTTCACTTCAAAAGCTTCAAGTTCGGACACGGATGCGGTGGTAGCGTCCACAAATGTGGAGGAAGACGTCGAGTCTGCTCAGCTATTCGAGAAATTAAAGGATGCTGAGCGACAACGGGTAAACAAGTTGAAAGAGCTTCAGAGGAAGGTGAATTTGCAATTAGAGAGGCAGCTTGTAATGGCTTCTAGTTGGTAGGGCCTTACTGACCATGCGGGGAAAATTAAAGGGAACTGAAAGAGATCCCGAGAACTCGCACAAAATTAATTTGAGTGATTGCAAGCAATGTCCAGTTCATTGAGTACTCAAATTATGGCCAAACAATGTCAGGTAGTCTCAGTACATTCTCTTTATATTTTAGAACGCGTGCACATTTTTCTTGTTTAGTTTATTTAGAAGCAAGAAAAAGGAAAAAAGAAAACAAA

Coding sequence (CDS)

ATGCTTACCTCCGAAATAGCTACCAAAGATCGCTCCCGAAACCGCATTTCTACTTTCCAGAAGTTCTGTAATCATCGAGTTTTCACTTCAAAAGCTTCAAGTTCGGACACGGATGCGGTGGTAGCGTCCACAAATGTGGAGGAAGACGTCGAGTCTGCTCAGCTATTCGAGAAATTAAAGGATGCTGAGCGACAACGGGTAAACAAGTTGAAAGAGCTTCAGAGGAAGGTGAATTTGCAATTAGAGAGGCAGCTTGTAATGGCTTCTAGTTGGTAG

Homology

[Close]

BLAST of CmoCh07G008230 vs. Swiss-Prot
Match: FTSI4_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana GN=FTSHI4 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-09
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 33  SSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW 92
           S+S  ++  +S + EED ES +LFEKL++ ER+R++ ++EL+RK N+QLERQLVMAS W
Sbjct: 66  STSSFESTESSVSQEEDAESNRLFEKLRETERERLSNMEELERKANVQLERQLVMASDW 124

[Close]

BLAST of CmoCh07G008230 vs. TrEMBL
Match: W9S040_9ROSA (ATP-dependent zinc metalloprotease FTSH OS=Morus notabilis GN=L484_020084 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-12
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 9   KDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVN 68
           K ++ N  S   K  N  +F   AS S +++V  S N EED ES Q+FEKLKDAER+R++
Sbjct: 49  KSQAYNGASFILKPRNLGIFARSASGSSSNSVAVSENSEEDAESVQIFEKLKDAERERIS 108

Query: 69  KLKELQRKVNLQLERQLVMASSW 92
           KL+EL+RK N QLERQLVMAS W
Sbjct: 109 KLEELERKANTQLERQLVMASYW 131

[Close]

BLAST of CmoCh07G008230 vs. TrEMBL
Match: A0A061DKD5_THECC (AAA-type ATPase family protein isoform 3 OS=Theobroma cacao GN=TCM_001455 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-12
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 18  TFQKFCNHRVFTSKAS--SSDTDAVVASTNVEE-DVESAQLFEKLKDAERQRVNKLKELQ 77
           TF K  N  +  S AS  SS +D+ VAS  VEE D ES QLFEKLKDAERQR+NKL+EL+
Sbjct: 48  TFIKRKNLTITASNASTSSSSSDSAVASNAVEEEDAESIQLFEKLKDAERQRINKLEELE 107

Query: 78  RKVNLQLERQLVMASSW 92
           RK +LQLERQLVMAS W
Sbjct: 108 RKADLQLERQLVMASCW 124

[Close]

BLAST of CmoCh07G008230 vs. TrEMBL
Match: A0A061DIR6_THECC (AAA-type ATPase family protein isoform 1 OS=Theobroma cacao GN=TCM_001455 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-12
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 18  TFQKFCNHRVFTSKAS--SSDTDAVVASTNVEE-DVESAQLFEKLKDAERQRVNKLKELQ 77
           TF K  N  +  S AS  SS +D+ VAS  VEE D ES QLFEKLKDAERQR+NKL+EL+
Sbjct: 72  TFIKRKNLTITASNASTSSSSSDSAVASNAVEEEDAESIQLFEKLKDAERQRINKLEELE 131

Query: 78  RKVNLQLERQLVMASSW 92
           RK +LQLERQLVMAS W
Sbjct: 132 RKADLQLERQLVMASCW 148

[Close]

BLAST of CmoCh07G008230 vs. TrEMBL
Match: A0A061DIY4_THECC (AAA-type ATPase family protein isoform 2 OS=Theobroma cacao GN=TCM_001455 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-12
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 18  TFQKFCNHRVFTSKAS--SSDTDAVVASTNVEE-DVESAQLFEKLKDAERQRVNKLKELQ 77
           TF K  N  +  S AS  SS +D+ VAS  VEE D ES QLFEKLKDAERQR+NKL+EL+
Sbjct: 48  TFIKRKNLTITASNASTSSSSSDSAVASNAVEEEDAESIQLFEKLKDAERQRINKLEELE 107

Query: 78  RKVNLQLERQLVMASSW 92
           RK +LQLERQLVMAS W
Sbjct: 108 RKADLQLERQLVMASCW 124

[Close]

BLAST of CmoCh07G008230 vs. TrEMBL
Match: A0A0D2SF55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G065600 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-12
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 27  VFTSKASSSDTDAVVASTNVE-EDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQL 86
           V     S S +D+ VAS  VE EDVES QLFEKLKDAERQR+NKL+EL+RK +LQLERQL
Sbjct: 61  VSNHSTSCSSSDSTVASNIVEEEDVESTQLFEKLKDAERQRINKLEELERKADLQLERQL 120

Query: 87  VMASSW 92
           VMAS W
Sbjct: 121 VMASCW 126

[Close]

BLAST of CmoCh07G008230 vs. TAIR10
Match: AT5G64580.1 (AT5G64580.1 AAA-type ATPase family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 33  SSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW 92
           S+S  ++  +S + EED ES +LFEKL++ ER+R++ ++EL+RK N+QLERQLVMAS W
Sbjct: 66  STSSFESTESSVSQEEDAESNRLFEKLRETERERLSNMEELERKANVQLERQLVMASDW 124

[Close]

BLAST of CmoCh07G008230 vs. NCBI nr
Match: gi|659080912|ref|XP_008441046.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-26
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 7   ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQR 66
           ATK RSR+R  TF KF  HRVFT KASSSDTDAVVAS NVEED ESAQLFEKLKDAERQR
Sbjct: 44  ATKTRSRHRSITFPKFRQHRVFTPKASSSDTDAVVASANVEEDDESAQLFEKLKDAERQR 103

Query: 67  VNKLKELQRKVNLQLERQLVMASSW 92
           +NKL+ELQRK NLQLERQLV+ASSW
Sbjct: 104 INKLEELQRKANLQLERQLVLASSW 128

[Close]

BLAST of CmoCh07G008230 vs. NCBI nr
Match: gi|449461843|ref|XP_004148651.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = 1


Query: 7   ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQR 66
           ATK RSR+R  TF  F  HRVFT KASSSDTDAVVAS NVEED ESAQLFEK+KDAERQR
Sbjct: 44  ATKTRSRDRSITFPMFRKHRVFTPKASSSDTDAVVASPNVEEDDESAQLFEKVKDAERQR 103

Query: 67  VNKLKELQRKVNLQLERQLVMASSW 92
           +NKL+ELQRK NLQLERQLVMASSW
Sbjct: 104 INKLEELQRKANLQLERQLVMASSW 128

[Close]

BLAST of CmoCh07G008230 vs. NCBI nr
Match: gi|703111603|ref|XP_010099899.1| (ATP-dependent zinc metalloprotease FTSH [Morus notabilis])

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 9   KDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVN 68
           K ++ N  S   K  N  +F   AS S +++V  S N EED ES Q+FEKLKDAER+R++
Sbjct: 49  KSQAYNGASFILKPRNLGIFARSASGSSSNSVAVSENSEEDAESVQIFEKLKDAERERIS 108

Query: 69  KLKELQRKVNLQLERQLVMASSW 92
           KL+EL+RK N QLERQLVMAS W
Sbjct: 109 KLEELERKANTQLERQLVMASYW 131

[Close]

BLAST of CmoCh07G008230 vs. NCBI nr
Match: gi|590708709|ref|XP_007048354.1| (AAA-type ATPase family protein isoform 3 [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-12
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 18  TFQKFCNHRVFTSKAS--SSDTDAVVASTNVEE-DVESAQLFEKLKDAERQRVNKLKELQ 77
           TF K  N  +  S AS  SS +D+ VAS  VEE D ES QLFEKLKDAERQR+NKL+EL+
Sbjct: 48  TFIKRKNLTITASNASTSSSSSDSAVASNAVEEEDAESIQLFEKLKDAERQRINKLEELE 107

Query: 78  RKVNLQLERQLVMASSW 92
           RK +LQLERQLVMAS W
Sbjct: 108 RKADLQLERQLVMASCW 124

[Close]

BLAST of CmoCh07G008230 vs. NCBI nr
Match: gi|590708705|ref|XP_007048353.1| (AAA-type ATPase family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-12
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 18  TFQKFCNHRVFTSKAS--SSDTDAVVASTNVEE-DVESAQLFEKLKDAERQRVNKLKELQ 77
           TF K  N  +  S AS  SS +D+ VAS  VEE D ES QLFEKLKDAERQR+NKL+EL+
Sbjct: 48  TFIKRKNLTITASNASTSSSSSDSAVASNAVEEEDAESIQLFEKLKDAERQRINKLEELE 107

Query: 78  RKVNLQLERQLVMASSW 92
           RK +LQLERQLVMAS W
Sbjct: 108 RKADLQLERQLVMASCW 124

The following BLAST results are available for this feature:

BLAST of CmoCh07G008230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FTSI4_ARATH	3.0e-09	54.24	Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=A...	[more]

BLAST of CmoCh07G008230 vs. TrEMBL


Match Name	E-value	Identity	Description
W9S040_9ROSA	2.0e-12	55.42	ATP-dependent zinc metalloprotease FTSH OS=Morus notabilis GN=L484_020084 PE=4 S...	[more]
A0A061DKD5_THECC	3.4e-12	66.23	AAA-type ATPase family protein isoform 3 OS=Theobroma cacao GN=TCM_001455 PE=4 S...	[more]
A0A061DIR6_THECC	3.4e-12	66.23	AAA-type ATPase family protein isoform 1 OS=Theobroma cacao GN=TCM_001455 PE=4 S...	[more]
A0A061DIY4_THECC	3.4e-12	66.23	AAA-type ATPase family protein isoform 2 OS=Theobroma cacao GN=TCM_001455 PE=4 S...	[more]
A0A0D2SF55_GOSRA	9.9e-12	69.70	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G065600 PE=4 SV=1	[more]

BLAST of CmoCh07G008230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64580.1	1.7e-10	54.24	AAA-type ATPase family protein	[more]

BLAST of CmoCh07G008230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080912\|ref\|XP_008441046.1\|	1.6e-26	83.53	PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis melo]	[more]
gi\|449461843\|ref\|XP_004148651.1\|	1.0e-25	82.35	PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis sativus]	[more]
gi\|703111603\|ref\|XP_010099899.1\|	2.9e-12	55.42	ATP-dependent zinc metalloprotease FTSH [Morus notabilis]	[more]
gi\|590708709\|ref\|XP_007048354.1\|	4.9e-12	66.23	AAA-type ATPase family protein isoform 3 [Theobroma cacao]	[more]
gi\|590708705\|ref\|XP_007048353.1\|	4.9e-12	66.23	AAA-type ATPase family protein isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008237	metallopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G008230.1	CmoCh07G008230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 52..79 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G008230	MELO3C008052	Melon (DHL92) v3.5.1	cmomeB783

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G008230	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G008230	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G008230	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G008230	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G008230	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G008230	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G008230	Watermelon (97103) v1	cmowmB814
CmoCh07G008230	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G008230	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G008230	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G008230	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G008230	Melon (DHL92) v3.6.1	cmomedB890
CmoCh07G008230	Silver-seed gourd	carcmoB0338
CmoCh07G008230	Silver-seed gourd	carcmoB1100
CmoCh07G008230	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G008230	Watermelon (97103) v2	cmowmbB849
CmoCh07G008230	Wax gourd	cmowgoB1066
CmoCh07G008230	Cucurbita moschata (Rifu)	cmocmoB455