CmoCh07G008170 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G008170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 3785191 .. 3787913 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTAGTAAGTAGGTTCAAAATTATCTTGTTAGAGACTCACAAGAATATTTTTTTTATTTAAATTATACTATTTTTTAGCTAAGTTAATTTAGTATATAAATACCAAGAGAATGACATTATCTAAACTTTAAATGTTTCAAAAATTAAATAAATTTCGTCTATCAAATCTTATGGTAATTACTTTATCACCATATCATCTTAATTTTTTAAAATTTTATTTCTCCCTTCTCGTGTATGTTTTTTTATTATTCTTTTTTCGATCTTAATTGTCAATTATCAATCATGAAACTCGTAAATTGAATAATGAATTAGTAGGTGGTCTAAGTTTGAGCCGTTTCCTTATTTGTTTTATAATTTACCCTAAAAATTATATGTTTAGGGGAGAAAAAAAAAACATGAAGTCACTCAAGAACAATTAGATGAATTTTTTAAGGAAGAAAAAGAAAAAAAAGGAAAAAAAGAAAAGAAAAAAAAGGAAAATATATCGGGGGAAAAGAAAACTGTGTGTTCGCCCCCAAAGTCTTTGAACCCTTTTTCGCCCATAGCTACTACCTTACTCTTCGTCTTCCTCCCACTCACTCTGCAACACAAGATGCTCAAAATATCCGCTCTGAAGATTTAGCTTAGCTTACAGTACGCCTGTATTCTTCTTCAATCATATTCTAGGGTTTACACCGTCGCCGCTTTCTGCCGGAACCTTTCTTCTTTCATGTGAGTTCTATGTTTCCCTCTTCCTTTAATCTTCTGCAATTTTGTTATGTTCATGTTTTCAGTTCTGGGTTTTGATCTCTTACTCGTCTTGTCTGAGACTGTATGTGCTGCGAGGTTCTTCCACTTCAAAGTTTGGACCTTTCCGATTATTACTCCCCATGTCCCCAACGCATATAAATACGCTCTTCTTGGTTTTAGTTTTGCTTTCGCAACTGTAGTTTTCTTCTGTGCTCGAGATTGTTTGTGATTGTGTGTATCTTTGGGAATCGATGACTTGGGATTGAGTTTTTTTTTTCCCCTTCTGCTGAAGTATTTCAAATGAGAGATAACTTGTGAGAAACGGAGCTGATCTTTCCTTGGGAGTTTATTAAACTTGCATACGGCTCTAGTTCAACTGGATTTTTAGGCGAAGCTAAGTTGATATAGACTGAATAGTTGATGAGTCGAAGATGATCGTTTGGTGGCCAAAAAGAATGCTATATTTTGTTCTCCTGTTGACAAATGCTATACTAGGGAGTTGATAGAACTCTTATAGTTTATTTGATTGTCGAAAGTGATTTTTCTTACTGAAGAAAAGGTTAAGTGGCTTATGATTTTTGCCATGGAATTTAACCACACTTGTACTGCCTGATGGCTTTCCCACCAACGTAACACTTGTAGTTCAATTGAAAGTCCAGTCTCTTTTAGCATAGTTCTCAGTTCAGTCTCTTTTAGCTACTGCTCCAGATGCGACCATGACATTCCTATTTGGCTCCAAGTATTGGACATTGCCCCCCTTCTTGTTACCGTTGAAGGGAAGTTTCTTGATTGTTGTTTTAGAAGGATGGCGAGGACGCACATGATTTTTTAGCCTCTTTTAGTCTTTTTTTACAAGTGTAACTCCTCATGCCTGGACGGTACCTCGTGGAAGGATTTATTCAAATAATTATATTTAAAGGAAAATTGTTTCTAAGCACATCTCTTAGGTGCATACATGATTAAAATGAAGGCCGAATCATGTGCAGATTTTTAGTGCTTGTTAGTGCTGCAATGGACTCCTTTCCTTGATGTTGACATATACAGTAGAGTGGAATGCTCGTCCCTTGTTTATTTTATGGTAGAGGGAAATGTATGTACTTTTGAAGACCCAGCCTTTTAATTCCACAGAATGTGGTATTTTATATATATTTCTTTTAGAATATTGTATGACAGGTCTATGCAATTAAAATATTTGTAGTTTGATTGATTTTCTGTCGTAAGTTGTAAATTAGATATGATTATCATTTGTATTGCTTATTAAAACTTTAGGGTGAATCTTAAATGATTTAGCTACTGGTTCTATATATATTTTACTTTACCGCTTGCTTAAGTTGTAGGCTCTTTTTCCTGCCAAAGTTAATTGATTAGACCCCAACATATTAGGTGCCTTGATAGATGTCCTCTTCTGTAGTTAATGTATCACGTTGAGTGTGCTAATGTCAAAATATAATTTTATGCAGTATCTTCACGTGGTTGGTTGATGGAAAGATTAGCAAGGGTGTACAATAATAACTTATGGCAATGGCTTTCTGTTCCACCACAAGAGCAATTGGGCATTAGCACAAATTCATGGAACTAAGTCACCTTTTGTATACAAGCTTGTTTCGAAGGACCTTTATGAGAAAACTATAGCTCATCAAACACATTGGGAATGAATCATGGATTACCTGAGTTGTGATAAATTACATGGTGAAGGGAGGGATGTATTCATCATAAAATGACTTTAGAACTTAATAGTCCTTGAAGAGTACATATGGTTTGTATGAAGAGTTACCAAGAGTAATAGTTCAATTGGTCTATCCTTATGGATGTCGTCCACTTCGAGCATTGTAATTGTACCCTGAATGACAATGTAACTTGCGAAATGAGCAACTCCCATCTACTTTTGTGACCTTTAAGTGGCTTTGTCATGGTTTGCTTGTTTGCTACATTGTCTATCCCTTGTACTAATAGTGACTAATGTTCCATACCTTATCGTTTTTCGATCTT

mRNA sequence

ATGATATTTAGCTTAGCTTACAGTACGCCTGTATTCTTCTTCAATCATATTCTAGGGTTTACACCGTCGCCGCTTTCTGCCGGAACCTTTCTTCTTTCATTATCTTCACGTGGTTGGTTGATGGAAAGATTAGCAAGGGTGTACAATAATAACTTATGGCAATGGCTTTCTGTTCCACCACAAGAGCAATTGGGCATTAGCACAAATTCATGGAACTAAGTCACCTTTTGTATACAAGCTTGTTTCGAAGGACCTTTATGAGAAAACTATAGCTCATCAAACACATTGGGAATGAATCATGGATTACCTGAGTTGTGATAAATTACATGGTGAAGGGAGGGATGTATTCATCATAAAATGACTTTAGAACTTAATAGTCCTTGAAGAGTACATATGGTTTGTATGAAGAGTTACCAAGAGTAATAGTTCAATTGGTCTATCCTTATGGATGTCGTCCACTTCGAGCATTGTAATTGTACCCTGAATGACAATGTAACTTGCGAAATGAGCAACTCCCATCTACTTTTGTGACCTTTAAGTGGCTTTGTCATGGTTTGCTTGTTTGCTACATTGTCTATCCCTTGTACTAATAGTGACTAATGTTCCATACCTTATCGTTTTTCGATCTT

Coding sequence (CDS)

ATGATATTTAGCTTAGCTTACAGTACGCCTGTATTCTTCTTCAATCATATTCTAGGGTTTACACCGTCGCCGCTTTCTGCCGGAACCTTTCTTCTTTCATTATCTTCACGTGGTTGGTTGATGGAAAGATTAGCAAGGGTGTACAATAATAACTTATGGCAATGGCTTTCTGTTCCACCACAAGAGCAATTGGGCATTAGCACAAATTCATGGAACTAA
Homology
[Close]
BLAST of CmoCh07G008170 vs. TrEMBL
Match: A0A0A0KKT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483465 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.6e-19
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 10 PVFFFNHILGFTPSPLSAGTFLLSLSSRGWLMERLARVYNNNLWQWLSVPPQEQLGISTN 69
          P+F FNHILG   S  SAG+ LLSLSSRG LMERLARV+NNNLWQWLSVP QEQLGIS N
Sbjct: 11 PIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKN 70

Query: 70 SWN 73
          SWN
Sbjct: 71 SWN 73

[Close]
BLAST of CmoCh07G008170 vs. NCBI nr
Match: gi|700193162|gb|KGN48366.1| (hypothetical protein Csa_6G483465 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 9.5e-19
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 10 PVFFFNHILGFTPSPLSAGTFLLSLSSRGWLMERLARVYNNNLWQWLSVPPQEQLGISTN 69
          P+F FNHILG   S  SAG+ LLSLSSRG LMERLARV+NNNLWQWLSVP QEQLGIS N
Sbjct: 11 PIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKN 70

Query: 70 SWN 73
          SWN
Sbjct: 71 SWN 73

The following BLAST results are available for this feature:
BLAST of CmoCh07G008170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G008170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKT8_CUCSA6.6e-1979.37Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483465 PE=4 SV=1[more]
BLAST of CmoCh07G008170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G008170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193162|gb|KGN48366.1|9.5e-1979.37hypothetical protein Csa_6G483465 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008170.1CmoCh07G008170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G008170CsaV3_6G041750Cucumber (Chinese Long) v3cmocucB1019
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G008170Watermelon (97103) v2cmowmbB849
CmoCh07G008170Wax gourdcmowgoB1066
CmoCh07G008170Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G008170Cucumber (Gy14) v1cgycmoB0233
CmoCh07G008170Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G008170Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G008170Wild cucumber (PI 183967)cmocpiB873
CmoCh07G008170Watermelon (Charleston Gray)cmowcgB755
CmoCh07G008170Cucumber (Chinese Long) v2cmocuB865
CmoCh07G008170Melon (DHL92) v3.5.1cmomeB783
CmoCh07G008170Watermelon (97103) v1cmowmB814
CmoCh07G008170Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G008170Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G008170Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G008170Cucumber (Gy14) v2cgybcmoB843
CmoCh07G008170Melon (DHL92) v3.6.1cmomedB890
CmoCh07G008170Silver-seed gourdcarcmoB0338
CmoCh07G008170Silver-seed gourdcarcmoB1100