CmoCh07G007960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G007960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Crossover junction endonuclease EME1
Location	Cmo_Chr07 : 3643144 .. 3644315 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAGCCGATTGTCCTCTCCGGCGAGGAGGACGGGTACTCTGCACCCTACCCGATCCACTCCAAGAAACGTCGAACTGGATCGGATGCATTTCTGAGTATATTCTCCACTGTTATTGTGCTTGATGATGATCCGAGTACTCATAAATCAGGTCGTAACTCTCCGCCTCGAGTTATGACGTTGTAATTGTTAACTGTATGAAGGCGGCATTTGACTTTCTTGCTAAGGATTTGAATACGGACCAGAAGTTCGCTGGTTAGTGAATTTTATTCTCTTAATTGGTTCGTAGTAGTAGTTTATTATTGTTTCGGTTCGCCTCTTGTGATGGATCAGTTAAATAATTTTCCTGCGCAGTAGTTTTGATCAAATAAACTTTGTTGATGCTGGATAGGAATATTCTGAAATAGATTGGCACCGTTTGTTTGAATTGAACCCTCAGGAATCAGTGGATTGATATGCTTAGAGTTCGATAACGAGTCTGAAAGTGATTCTCAGAAGAATGAGTATGGGCACTGTGATTGGATTGATTCTGATCGTGATGATGTGAAAAACTCAGTACCGACTTCTAAATTTGACAGGGCAGGATCGGGTTCTTCTCTTGGTAGGTTCATGTTATCCTTGGTTTCCTTTCCTATTTTTGTCAGTTCCTGCATTTCTTACTGCGTGGAGCAAACAGAAGTGTGTTCATTTCCGGAACTCCGCCATCCTTGAAAACTGTGGACATTAATGGAAGTGTTTTGACAGGGAACGATGTTCTGCAGTGAATTTTTGGGGACACAAAGTATTCAAGTTTTGGGGGAGATGATGGTATTGATATGTATCAGGTGGATCCTTTCAAAGTAAGATCACAATATCTGTTTTCTTTCTGAAGATTGAATATGGATAGGGAGTAGTAATGGCTTCTAGATTTAGTTATTAATGTAACGTGGTGCATTATGAAGCATAGATACTAGATTGAGTACTACTTGCATGATAAGGTTTTTGTTTGTCAGTTTTCTCATCTCTCATCATTTGCGCAGGCGCTTGCATATTTGAAGTCATTTCTTAGCCCGCCTTCCATTGTTCCTTAGCTTGTTCTAAATCAGAATATTTACTGCAATACTACTGTAATGAAAAGTTTGTGCTGCACAGCTAATACAGTGCAGTATAAGATTACACGCCCTATGTAA

mRNA sequence

ATGTCCCAGCCGATTGTCCTCTCCGGCGAGGAGGACGGGTACTCTGCACCCTACCCGATCCACTCCAAGAAACGTCGAACTGGATCGGATGCATTTCTGAGTATATTCTCCACTGTTATTGTGCTTGATGATGATCCGAGTACTCATAAATCAGGTCGTAACTCTCCGCCTCGAGCGGCATTTGACTTTCTTGCTAAGGATTTGAATACGGACCAGAAGTTCGCTGGAATCAGTGGATTGATATGCTTAGAGTTCGATAACGAGTCTGAAAGTGATTCTCAGAAGAATGAGTATGGGCACTGTGATTGGATTGATTCTGATCGTGATGATGTGAAAAACTCAGTACCGACTTCTAAATTTGACAGGGCAGGATCGGGTTCTTCTCTTGGTAGGTTCATGTTATCCTTGGTTTCCTTTCCTATTTTTGTCAGTTCCTGCATTTCTTACTGCGTGGAGCAAACAGAATTTTCTCATCTCTCATCATTTGCGCAGGCGCTTGCATATTTGAAGTCATTTCTTAGCCCGCCTTCCATTAATATTTACTGCAATACTACTGTAATGAAAAGTTTGTGCTGCACAGCTAATACAGTGCAGTATAAGATTACACGCCCTATGTAA

Coding sequence (CDS)

ATGTCCCAGCCGATTGTCCTCTCCGGCGAGGAGGACGGGTACTCTGCACCCTACCCGATCCACTCCAAGAAACGTCGAACTGGATCGGATGCATTTCTGAGTATATTCTCCACTGTTATTGTGCTTGATGATGATCCGAGTACTCATAAATCAGGTCGTAACTCTCCGCCTCGAGCGGCATTTGACTTTCTTGCTAAGGATTTGAATACGGACCAGAAGTTCGCTGGAATCAGTGGATTGATATGCTTAGAGTTCGATAACGAGTCTGAAAGTGATTCTCAGAAGAATGAGTATGGGCACTGTGATTGGATTGATTCTGATCGTGATGATGTGAAAAACTCAGTACCGACTTCTAAATTTGACAGGGCAGGATCGGGTTCTTCTCTTGGTAGGTTCATGTTATCCTTGGTTTCCTTTCCTATTTTTGTCAGTTCCTGCATTTCTTACTGCGTGGAGCAAACAGAATTTTCTCATCTCTCATCATTTGCGCAGGCGCTTGCATATTTGAAGTCATTTCTTAGCCCGCCTTCCATTAATATTTACTGCAATACTACTGTAATGAAAAGTTTGTGCTGCACAGCTAATACAGTGCAGTATAAGATTACACGCCCTATGTAA

Homology

[Close]

BLAST of CmoCh07G007960 vs. TrEMBL
Match: A0A0A0KHY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486820 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-31
Identity = 84/160 (52.50%), Postives = 98/160 (61.25%), Query Frame = 1


Query: 1   MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPP--- 60
           MSQPI+LS EED YS P PI SKKRRT SD   +I STV+VLDDDP+  KS  NS     
Sbjct: 1   MSQPIILSDEEDRYSTPIPIPSKKRRTESDLLPNIKSTVLVLDDDPTPQKSNHNSAASFV 60

Query: 61  -------------------RAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEY 120
                              +A  +  A+DLN+DQKFAGISGLICLE DNESESDSQK + 
Sbjct: 61  PETPLSPQPSSDVAIVKCTKAGLNLHARDLNSDQKFAGISGLICLESDNESESDSQKKKC 120

Query: 121 GHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS 139
              +WI SD  ++KN   +  FD AGSGSSLG   L  +S
Sbjct: 121 EQSEWIGSDCYEMKNIGASLPFDSAGSGSSLGNDDLQEIS 160

[Close]

BLAST of CmoCh07G007960 vs. TrEMBL
Match: A0A067ETB5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0085001mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-10
Identity = 54/148 (36.49%), Postives = 73/148 (49.32%), Query Frame = 1


Query: 1   MSQPIVLSGEEDGYSAPYPIHS--KKRRTGSDAFLSIFSTVIVLDDDPSTHKSG----RN 60
           MS+PI+LS EED  +   PI    KK RTG      +  TV++LDDDP+  KSG     +
Sbjct: 1   MSEPIILSDEEDQNALETPIQCPYKKIRTGPHP---VAPTVLILDDDPTPKKSGFAPSSS 60

Query: 61  SPP------------------RAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKN 120
           S P                  R+  D   +  N+D+  AG S L+CLE DNE ES S + 
Sbjct: 61  STPSFVAETPMSDVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRV 120

Query: 121 EYGHCDWIDSDRDDVKNSVPTSKFDRAG 125
           + G  + + SD DD K+S    +   AG
Sbjct: 121 DLGQNELVHSDSDDEKDSEWDLRIGNAG 145

[Close]

BLAST of CmoCh07G007960 vs. TrEMBL
Match: V4SKL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025290mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-10
Identity = 54/148 (36.49%), Postives = 73/148 (49.32%), Query Frame = 1


Query: 1   MSQPIVLSGEEDGYSAPYPIHS--KKRRTGSDAFLSIFSTVIVLDDDPSTHKSG----RN 60
           MS+PI+LS EED  +   PI    KK RTG      +  TV++LDDDP+  KSG     +
Sbjct: 1   MSEPIILSDEEDQNALETPIQCPYKKIRTGPHP---VAPTVLILDDDPTPKKSGFAPSSS 60

Query: 61  SPP------------------RAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKN 120
           S P                  R+  D   +  N+D+  AG S L+CLE DNE ES S + 
Sbjct: 61  STPSFVAETPMSDVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRV 120

Query: 121 EYGHCDWIDSDRDDVKNSVPTSKFDRAG 125
           + G  + + SD DD K+S    +   AG
Sbjct: 121 DLGQNELVHSDSDDEKDSEWDLRIGNAG 145

[Close]

BLAST of CmoCh07G007960 vs. TrEMBL
Match: A0A0R0ISJ1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G144700 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-10
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 1


Query: 4   PIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS-----PPR 63
           PIVLS EED  S P+P+  KKRRT  D   +   TV V+DDDP+ HKS   S     P  
Sbjct: 3   PIVLSDEEDP-STPFPLRPKKRRTEPDPNPNPNRTVFVIDDDPTPHKSATPSIVPETPMS 62

Query: 64  AAFDF--------LAKD---LNTDQKFAGISGLICLEFDNESE----SDSQKNEYGHCDW 107
           A FD         +  D   + + +KF+GIS +ICLE DNESE    S   +NE     W
Sbjct: 63  ALFDSEIAIVKCTMLSDPAVMVSPKKFSGISQMICLESDNESENCGISTRNENEARDSRW 122

[Close]

BLAST of CmoCh07G007960 vs. TrEMBL
Match: K7KR32_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 51/123 (41.46%), Postives = 65/123 (52.85%), Query Frame = 1


Query: 4   PIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS-----PPR 63
           PI+LS EED  S P+P+  KKRRT  D   +   TV V+DDDP+ HKS   S     P  
Sbjct: 3   PIILSDEEDP-STPFPLRPKKRRTEPDPNPNPNRTVFVIDDDPTPHKSATPSIVPETPMS 62

Query: 64  AAFD----FLAKDLNTD-------QKFAGISGLICLEFDNESES----DSQKNEYGHCDW 107
           A FD     +   + +D       +KF+GIS +ICLE DNESE+       KNE     W
Sbjct: 63  ALFDSDIAIVKCTIPSDPTARVSPKKFSGISQMICLESDNESENCGMGTRDKNEPRDSRW 122

[Close]

BLAST of CmoCh07G007960 vs. NCBI nr
Match: gi|778717963|ref|XP_011657785.1| (PREDICTED: crossover junction endonuclease EME1B isoform X2 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 84/160 (52.50%), Postives = 98/160 (61.25%), Query Frame = 1


Query: 1   MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPP--- 60
           MSQPI+LS EED YS P PI SKKRRT SD   +I STV+VLDDDP+  KS  NS     
Sbjct: 1   MSQPIILSDEEDRYSTPIPIPSKKRRTESDLLPNIKSTVLVLDDDPTPQKSNHNSAASFV 60

Query: 61  -------------------RAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEY 120
                              +A  +  A+DLN+DQKFAGISGLICLE DNESESDSQK + 
Sbjct: 61  PETPLSPQPSSDVAIVKCTKAGLNLHARDLNSDQKFAGISGLICLESDNESESDSQKKKC 120

Query: 121 GHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS 139
              +WI SD  ++KN   +  FD AGSGSSLG   L  +S
Sbjct: 121 EQSEWIGSDCYEMKNIGASLPFDSAGSGSSLGNDDLQEIS 160

[Close]

BLAST of CmoCh07G007960 vs. NCBI nr
Match: gi|449448582|ref|XP_004142045.1| (PREDICTED: crossover junction endonuclease EME1B isoform X1 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 84/160 (52.50%), Postives = 98/160 (61.25%), Query Frame = 1


Query: 1   MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPP--- 60
           MSQPI+LS EED YS P PI SKKRRT SD   +I STV+VLDDDP+  KS  NS     
Sbjct: 1   MSQPIILSDEEDRYSTPIPIPSKKRRTESDLLPNIKSTVLVLDDDPTPQKSNHNSAASFV 60

Query: 61  -------------------RAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEY 120
                              +A  +  A+DLN+DQKFAGISGLICLE DNESESDSQK + 
Sbjct: 61  PETPLSPQPSSDVAIVKCTKAGLNLHARDLNSDQKFAGISGLICLESDNESESDSQKKKC 120

Query: 121 GHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS 139
              +WI SD  ++KN   +  FD AGSGSSLG   L  +S
Sbjct: 121 EQSEWIGSDCYEMKNIGASLPFDSAGSGSSLGNDDLQEIS 160

[Close]

BLAST of CmoCh07G007960 vs. NCBI nr
Match: gi|659079130|ref|XP_008440091.1| (PREDICTED: crossover junction endonuclease EME1B isoform X2 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 6.2e-31
Identity = 85/160 (53.12%), Postives = 97/160 (60.62%), Query Frame = 1


Query: 1   MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPP--- 60
           MSQPIVLS EED YS P PI SKKRRT SD   SI STV+VLDDDP+  KS  NS     
Sbjct: 1   MSQPIVLSDEEDRYSTPIPIPSKKRRTESDLLPSIKSTVLVLDDDPTPQKSNHNSAASFV 60

Query: 61  -------------------RAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEY 120
                              +A  +  A+DLN+DQKFAGISGLICLE DNESESDSQK + 
Sbjct: 61  PETPLSPQLSSDVAIVKCTKAGLNLHARDLNSDQKFAGISGLICLESDNESESDSQKRKC 120

Query: 121 GHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS 139
              +WI SD  ++KN   +  FD AGSGSS G   L  +S
Sbjct: 121 EQSEWIGSDCYEMKNIGASLPFDSAGSGSSHGNDDLQEIS 160

[Close]

BLAST of CmoCh07G007960 vs. NCBI nr
Match: gi|659079128|ref|XP_008440090.1| (PREDICTED: crossover junction endonuclease EME1B isoform X1 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 6.2e-31
Identity = 85/160 (53.12%), Postives = 97/160 (60.62%), Query Frame = 1


Query: 1   MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPP--- 60
           MSQPIVLS EED YS P PI SKKRRT SD   SI STV+VLDDDP+  KS  NS     
Sbjct: 1   MSQPIVLSDEEDRYSTPIPIPSKKRRTESDLLPSIKSTVLVLDDDPTPQKSNHNSAASFV 60

Query: 61  -------------------RAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEY 120
                              +A  +  A+DLN+DQKFAGISGLICLE DNESESDSQK + 
Sbjct: 61  PETPLSPQLSSDVAIVKCTKAGLNLHARDLNSDQKFAGISGLICLESDNESESDSQKRKC 120

Query: 121 GHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS 139
              +WI SD  ++KN   +  FD AGSGSS G   L  +S
Sbjct: 121 EQSEWIGSDCYEMKNIGASLPFDSAGSGSSHGNDDLQEIS 160

[Close]

BLAST of CmoCh07G007960 vs. NCBI nr
Match: gi|1009138418|ref|XP_015886576.1| (PREDICTED: crossover junction endonuclease EME1B-like [Ziziphus jujuba])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 1


Query: 1   MSQPIVLSGEEDG--YSAPY-PIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPP 60
           MS PIVLS EED    S P+ PI  KKRRT  D+  ++  TV++LDDDP+  K G NS P
Sbjct: 1   MSHPIVLSDEEDQNELSTPFHPIRFKKRRTEPDS-TTMIPTVLILDDDPTPKKPGLNSTP 60

Query: 61  R-----------------AAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEYGH 115
                             A  D    + N ++KF+ I+GLICLE DNESE  +++  +  
Sbjct: 61  SFVPETPMSNVAIVKCTTAVSDPQNSNSNFEEKFSDINGLICLESDNESEGGNRRENWKD 120

The following BLAST results are available for this feature:

BLAST of CmoCh07G007960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G007960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHY1_CUCSA	1.9e-31	52.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486820 PE=4 SV=1	[more]
A0A067ETB5_CITSI	7.2e-10	36.49	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0085001mg PE=4 ...	[more]
V4SKL4_9ROSI	7.2e-10	36.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025290mg PE=4 SV=1	[more]
A0A0R0ISJ1_SOYBN	9.4e-10	42.28	Uncharacterized protein OS=Glycine max GN=GLYMA_08G144700 PE=4 SV=1	[more]
K7KR32_SOYBN	1.6e-09	41.46	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmoCh07G007960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh07G007960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778717963\|ref\|XP_011657785.1\|	2.8e-31	52.50	PREDICTED: crossover junction endonuclease EME1B isoform X2 [Cucumis sativus]	[more]
gi\|449448582\|ref\|XP_004142045.1\|	2.8e-31	52.50	PREDICTED: crossover junction endonuclease EME1B isoform X1 [Cucumis sativus]	[more]
gi\|659079130\|ref\|XP_008440091.1\|	6.2e-31	53.13	PREDICTED: crossover junction endonuclease EME1B isoform X2 [Cucumis melo]	[more]
gi\|659079128\|ref\|XP_008440090.1\|	6.2e-31	53.13	PREDICTED: crossover junction endonuclease EME1B isoform X1 [Cucumis melo]	[more]
gi\|1009138418\|ref\|XP_015886576.1\|	3.2e-11	40.30	PREDICTED: crossover junction endonuclease EME1B-like [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G007960.1	CmoCh07G007960.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G007960	CSPI06G27000	Wild cucumber (PI 183967)	cmocpiB873

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G007960	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G007960	Silver-seed gourd	carcmoB0338
CmoCh07G007960	Silver-seed gourd	carcmoB1100
CmoCh07G007960	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G007960	Watermelon (97103) v2	cmowmbB849
CmoCh07G007960	Wax gourd	cmowgoB1066
CmoCh07G007960	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G007960	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G007960	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G007960	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G007960	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G007960	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G007960	Watermelon (97103) v1	cmowmB814
CmoCh07G007960	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G007960	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G007960	Bottle gourd (USVL1VR-Ls)	cmolsiB774