CmoCh07G006260 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G006260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 2828135 .. 2828742 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTACAGGGTGCTGAAAAGTATTTAGAGGGAGGGAATCAACGGGGTCTGAGGCGAGCGAGGGAATCAACGGGGTTCTGAGAGCGAGGGAAAACGTGCACAATCCAATTCGCGGAACTTACGGTTACACTTGACACAGAGCAATGGAGGGCAGCGCCGCCGTAACCGGTCTGAACCCAGATTACCTTCTTCCTTCTTCTCGCCGTGCTTCTCCTTTTCTCCATTCCTATACATCTTCACGCTCCTCCTTCCACAGAAAGCATTCGTCTCCATTCTTCTATAAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTTCTCTTTATTTTAAGATTGCCGTTTCATTTTTCTTCATTTTCGCATTGTTTTCGCCTTGCAGTTCCAGAAGAAGCTTCGTCTTCCTTCCTTCAATGCTCGTCAAGCTGTATCTCCCATCAGGTGTCGTGAAAATCTTTTTTGGTACCTTTACGGTTTTCTGTATTTCTGTTTTCTATCTTTTATGTGTAGGCTATTCTGCATGCGCTTGAAATTGGTTGTGTGATGTACAACCATTCTCTGCAACTCATCTTTACTGTTGATATGCCTATATTGGAAGAATAA

mRNA sequence

GGTACAGGGTGCTGAAAAGTATTTAGAGGGAGGGAATCAACGGGGTCTGAGGCGAGCGAGGGAATCAACGGGGTTCTGAGAGCGAGGGAAAACGTGCACAATCCAATTCGCGGAACTTACGGTTACACTTGACACAGAGCAATGGAGGGCAGCGCCGCCGTAACCGGTCTGAACCCAGATTACCTTCTTCCTTCTTCTCGCCGTGCTTCTCCTTTTCTCCATTCCTATACATCTTCACGCTCCTCCTTCCACAGAAAGCATTCGTCTCCATTCTTCTATAAGTTCCAGAAGAAGCTTCGTCTTCCTTCCTTCAATGCTCGTCAAGCTGCTATTCTGCATGCGCTTGAAATTGGTTGTGTGATGTACAACCATTCTCTGCAACTCATCTTTACTGTTGATATGCCTATATTGGAAGAATAA

Coding sequence (CDS)

ATGGAGGGCAGCGCCGCCGTAACCGGTCTGAACCCAGATTACCTTCTTCCTTCTTCTCGCCGTGCTTCTCCTTTTCTCCATTCCTATACATCTTCACGCTCCTCCTTCCACAGAAAGCATTCGTCTCCATTCTTCTATAAGTTCCAGAAGAAGCTTCGTCTTCCTTCCTTCAATGCTCGTCAAGCTGCTATTCTGCATGCGCTTGAAATTGGTTGTGTGATGTACAACCATTCTCTGCAACTCATCTTTACTGTTGATATGCCTATATTGGAAGAATAA
Homology
[Close]
BLAST of CmoCh07G006260 vs. TrEMBL
Match: A0A0S2GLQ9_CUCSA (Branched-chain-amino-acid aminotransferase OS=Cucumis sativus PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-10
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 1  MEGSAAVTGLNPDYLLPSSRRASPFLHSYTSSRSSFHRKHSSPFFYKFQKKLRLPSFNAR 60
          ME +AA+T L P+YLL SSRR SPFLHS +SS SSF+  HSSP F K  KKLRLPS NA 
Sbjct: 1  MESTAALTSLRPNYLLCSSRRFSPFLHSSSSSTSSFN--HSSPLFLK--KKLRLPSINAP 60

Query: 61 QAAILHALEIGCV 74
          Q A   + ++G +
Sbjct: 61 QTASPISKDVGAI 69

[Close]
BLAST of CmoCh07G006260 vs. TrEMBL
Match: A0A0A0KG15_CUCSA (Branched-chain-amino-acid aminotransferase OS=Cucumis sativus GN=Csa_6G496970 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-08
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1  MEGSAAVTGLNPDYLLPSSRRASPFLHSYTSSRSSFHRKHSSPFFYKFQKKLRLPSFNAR 60
          ME +AA+T L P+YLL SSRR SPFLHS +SS +S    HSSP F K  KKLRLPS NA 
Sbjct: 1  MESTAALTSLRPNYLLCSSRRFSPFLHSSSSSSTSSF-NHSSPSFLK--KKLRLPSINAP 60

Query: 61 QAAILHALEIGCV 74
          Q A   + ++G +
Sbjct: 61 QTASPISKDVGAI 70

[Close]
BLAST of CmoCh07G006260 vs. NCBI nr
Match: gi|659079781|ref|XP_008440441.1| (PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1  MEGSAAVTGLNPDYLLPSSRRASPFLHSYTSSRSSFHRKHSSPFFYKFQKKLRLPSFNAR 60
          MEGSAA+ GL P+YLL SSRR SPFLHS +SS SSF+RK SSPFF K  KKLR PS NAR
Sbjct: 1  MEGSAAIAGLRPNYLLCSSRRNSPFLHSSSSSTSSFNRKLSSPFFLK--KKLRFPSINAR 60

Query: 61 QAAILHALEIG 72
          Q     + ++G
Sbjct: 61 QTVSPISKDVG 69

[Close]
BLAST of CmoCh07G006260 vs. NCBI nr
Match: gi|952094117|gb|ALN97496.1| (branched-chain amino acid aminotransferase [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 1  MEGSAAVTGLNPDYLLPSSRRASPFLHSYTSSRSSFHRKHSSPFFYKFQKKLRLPSFNAR 60
          ME +AA+T L P+YLL SSRR SPFLHS +SS SSF+  HSSP F K  KKLRLPS NA 
Sbjct: 1  MESTAALTSLRPNYLLCSSRRFSPFLHSSSSSTSSFN--HSSPLFLK--KKLRLPSINAP 60

Query: 61 QAAILHALEIGCV 74
          Q A   + ++G +
Sbjct: 61 QTASPISKDVGAI 69

[Close]
BLAST of CmoCh07G006260 vs. NCBI nr
Match: gi|449451331|ref|XP_004143415.1| (PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-08
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1  MEGSAAVTGLNPDYLLPSSRRASPFLHSYTSSRSSFHRKHSSPFFYKFQKKLRLPSFNAR 60
          ME +AA+T L P+YLL SSRR SPFLHS +SS +S    HSSP F K  KKLRLPS NA 
Sbjct: 1  MESTAALTSLRPNYLLCSSRRFSPFLHSSSSSSTSSF-NHSSPSFLK--KKLRLPSINAP 60

Query: 61 QAAILHALEIGCV 74
          Q A   + ++G +
Sbjct: 61 QTASPISKDVGAI 70

The following BLAST results are available for this feature:
BLAST of CmoCh07G006260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G006260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2GLQ9_CUCSA7.2e-1058.90Branched-chain-amino-acid aminotransferase OS=Cucumis sativus PE=3 SV=1[more]
A0A0A0KG15_CUCSA3.0e-0856.16Branched-chain-amino-acid aminotransferase OS=Cucumis sativus GN=Csa_6G496970 PE... [more]
BLAST of CmoCh07G006260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G006260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079781|ref|XP_008440441.1|1.3e-1264.79PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic-like [Cuc... [more]
gi|952094117|gb|ALN97496.1|1.0e-0958.90branched-chain amino acid aminotransferase [Cucumis sativus][more]
gi|449451331|ref|XP_004143415.1|4.3e-0856.16PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic-like [Cuc... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006574 valine catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004084 branched-chain-amino-acid transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G006260.1CmoCh07G006260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G006260Cp4.1LG19g10370Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G006260Carg18521Silver-seed gourdcarcmoB0005
CmoCh07G006260Carg00763Silver-seed gourdcarcmoB0554
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G006260Cucumber (Chinese Long) v3cmocucB1006
CmoCh07G006260Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G006260Watermelon (97103) v2cmowmbB849
CmoCh07G006260Wax gourdcmowgoB1063
CmoCh07G006260Melon (DHL92) v3.5.1cmomeB793
CmoCh07G006260Cucurbita moschata (Rifu)cmocmoB037
CmoCh07G006260Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G006260Cucumber (Gy14) v1cgycmoB0233
CmoCh07G006260Cucumber (Gy14) v1cgycmoB0970
CmoCh07G006260Cucurbita maxima (Rimu)cmacmoB065
CmoCh07G006260Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G006260Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G006260Wild cucumber (PI 183967)cmocpiB864
CmoCh07G006260Wild cucumber (PI 183967)cmocpiB873
CmoCh07G006260Watermelon (Charleston Gray)cmowcgB755
CmoCh07G006260Cucumber (Chinese Long) v2cmocuB856
CmoCh07G006260Cucumber (Chinese Long) v2cmocuB865
CmoCh07G006260Watermelon (97103) v1cmowmB816
CmoCh07G006260Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G006260Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G006260Cucumber (Gy14) v2cgybcmoB543
CmoCh07G006260Cucumber (Gy14) v2cgybcmoB843
CmoCh07G006260Melon (DHL92) v3.6.1cmomedB896