CmoCh07G006050 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G006050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptiontRNA-dihydrouridine synthase (1.-.-.-)
LocationCmo_Chr07 : 2723227 .. 2723697 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTACCAAGCATGCTCAGAGGGCAGACTACTGTGAGAGGCCGCTTGTTTATAAGTAAAGGAGGCAGTTGGTATCATTTTGGGTTGACACTGAATTGTATTACATCAGTTAGAAAGACAAAAGGAAAAATAAAAAATAAAAAATACCAATAAAAATACCAAGTGATACTTCTGTAAGTTTTGTATGTGCTCTTTGTTTTCATTTTATTTTAATATGTTTTTGTAGTCGTGCTCGATAACTTGCAGAAGAGTTGCAGATAGGCCCAGAGATCCAGCTAAGTGGAGTGAGATTGCAGATGTCGTGGCAGCATTGTCTGTCCCGGTTATTGCGAACGGTGATATCTTTGAGTACGAAGATTTTCACCATATCAAAGTTGCTACAGGTTTGCTCAAAAGGCACTGTTTTATGGATTTCTTGATGATGCCTGAATTTCTTTTAGTGAATGGGTTGAATATGATCCCAACCTGA

mRNA sequence

ATGTGCTACCAAGCATGCTCAGAGGGCAGACTACTAAGAGTTGCAGATAGGCCCAGAGATCCAGCTAAGTGGAGTGAGATTGCAGATGTCGTGGCAGCATTGTCTGTCCCGGTTATTGCGAACGGTGATATCTTTGAGTACGAAGATTTTCACCATATCAAAGTTGCTACAGGTTTGCTCAAAAGGCACTGTTTTATGGATTTCTTGATGATGCCTGAATTTCTTTTAGTGAATGGGTTGAATATGATCCCAACCTGA

Coding sequence (CDS)

ATGTGCTACCAAGCATGCTCAGAGGGCAGACTACTAAGAGTTGCAGATAGGCCCAGAGATCCAGCTAAGTGGAGTGAGATTGCAGATGTCGTGGCAGCATTGTCTGTCCCGGTTATTGCGAACGGTGATATCTTTGAGTACGAAGATTTTCACCATATCAAAGTTGCTACAGGTTTGCTCAAAAGGCACTGTTTTATGGATTTCTTGATGATGCCTGAATTTCTTTTAGTGAATGGGTTGAATATGATCCCAACCTGA
Homology
[Close]
BLAST of CmoCh07G006050 vs. TrEMBL
Match: W9S167_9ROSA (tRNA-dihydrouridine(20) synthase [NAD(P)+]-like protein OS=Morus notabilis GN=L484_016100 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-15
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           +VADRPRDPAKW+EIADVVA++S+PVIANGD+FEY+DF HIKVATG
Sbjct: 104 KVADRPRDPAKWAEIADVVASISIPVIANGDVFEYDDFQHIKVATG 149

[Close]
BLAST of CmoCh07G006050 vs. TrEMBL
Match: A0A022RWV7_ERYGU (tRNA-dihydrouridine synthase OS=Erythranthe guttata GN=MIMGU_mgv1a009744mg PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.0e-15
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           +VADRPRDPAKWSEIADVVAA+S+PVIANGD+FEYEDF  I+VATG
Sbjct: 190 KVADRPRDPAKWSEIADVVAAVSIPVIANGDVFEYEDFKRIRVATG 235

[Close]
BLAST of CmoCh07G006050 vs. TrEMBL
Match: A0A068U3E4_COFCA (tRNA-dihydrouridine synthase OS=Coffea canephora GN=GSCOC_T00040134001 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.0e-15
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           RVADRPRDPAKW+EIADVVAALS+PVIANGD+FE+EDF  +KVATG
Sbjct: 180 RVADRPRDPAKWNEIADVVAALSIPVIANGDVFEFEDFERMKVATG 225

[Close]
BLAST of CmoCh07G006050 vs. TrEMBL
Match: A0A0A0KGL3_CUCSA (tRNA-dihydrouridine synthase OS=Cucumis sativus GN=Csa_6G497190 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           RVADRPRDPAKWSEIADVVAAL++PVIANGDIFEY+DF  IKV TG
Sbjct: 180 RVADRPRDPAKWSEIADVVAALTIPVIANGDIFEYDDFQRIKVHTG 225

[Close]
BLAST of CmoCh07G006050 vs. TrEMBL
Match: A0A059B1V5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02404 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           RV DRPRDPAKW EIADVVAALS+PVIANGD+FEY+DF  IKVATG
Sbjct: 236 RVPDRPRDPAKWDEIADVVAALSIPVIANGDVFEYDDFQRIKVATG 281

[Close]
BLAST of CmoCh07G006050 vs. TAIR10
Match: AT3G49640.1 (AT3G49640.1 Aldolase-type TIM barrel family protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           ++ADRPRDPAKW EIADVVAALS+PVIANGD+ EY+DF  IK ATG
Sbjct: 180 KIADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATG 225

[Close]
BLAST of CmoCh07G006050 vs. NCBI nr
Match: gi|703132383|ref|XP_010105111.1| (tRNA-dihydrouridine(20) synthase [NAD(P)+])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           +VADRPRDPAKW+EIADVVA++S+PVIANGD+FEY+DF HIKVATG
Sbjct: 104 KVADRPRDPAKWAEIADVVASISIPVIANGDVFEYDDFQHIKVATG 149

[Close]
BLAST of CmoCh07G006050 vs. NCBI nr
Match: gi|747102558|ref|XP_011099447.1| (PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           +VADRPRDPAKWSEIADVVAA+S+PVIANGD+FEYEDF  IKVATG
Sbjct: 182 KVADRPRDPAKWSEIADVVAAVSIPVIANGDVFEYEDFERIKVATG 227

[Close]
BLAST of CmoCh07G006050 vs. NCBI nr
Match: gi|747102556|ref|XP_011099446.1| (PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           +VADRPRDPAKWSEIADVVAA+S+PVIANGD+FEYEDF  IKVATG
Sbjct: 167 KVADRPRDPAKWSEIADVVAAVSIPVIANGDVFEYEDFERIKVATG 212

[Close]
BLAST of CmoCh07G006050 vs. NCBI nr
Match: gi|747102552|ref|XP_011099444.1| (PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           +VADRPRDPAKWSEIADVVAA+S+PVIANGD+FEYEDF  IKVATG
Sbjct: 182 KVADRPRDPAKWSEIADVVAAVSIPVIANGDVFEYEDFERIKVATG 227

[Close]
BLAST of CmoCh07G006050 vs. NCBI nr
Match: gi|747102560|ref|XP_011099448.1| (PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1 

Query: 13  RVADRPRDPAKWSEIADVVAALSVPVIANGDIFEYEDFHHIKVATG 59
           +VADRPRDPAKWSEIADVVAA+S+PVIANGD+FEYEDF  IKVATG
Sbjct: 182 KVADRPRDPAKWSEIADVVAAVSIPVIANGDVFEYEDFERIKVATG 227

The following BLAST results are available for this feature:
BLAST of CmoCh07G006050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G006050 vs. TrEMBL
Match NameE-valueIdentityDescription
W9S167_9ROSA3.1e-1582.61tRNA-dihydrouridine(20) synthase [NAD(P)+]-like protein OS=Morus notabilis GN=L4... [more]
A0A022RWV7_ERYGU9.0e-1584.78tRNA-dihydrouridine synthase OS=Erythranthe guttata GN=MIMGU_mgv1a009744mg PE=3 ... [more]
A0A068U3E4_COFCA9.0e-1584.78tRNA-dihydrouridine synthase OS=Coffea canephora GN=GSCOC_T00040134001 PE=3 SV=1[more]
A0A0A0KGL3_CUCSA1.2e-1486.96tRNA-dihydrouridine synthase OS=Cucumis sativus GN=Csa_6G497190 PE=3 SV=1[more]
A0A059B1V5_EUCGR1.5e-1484.78Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02404 PE=4 SV=1[more]
BLAST of CmoCh07G006050 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49640.11.1e-1678.26 Aldolase-type TIM barrel family protein[more]
BLAST of CmoCh07G006050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703132383|ref|XP_010105111.1|4.4e-1582.61tRNA-dihydrouridine(20) synthase [NAD(P)+][more]
gi|747102558|ref|XP_011099447.1|4.4e-1586.96PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+][more]
gi|747102556|ref|XP_011099446.1|4.4e-1586.96PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+][more]
gi|747102552|ref|XP_011099444.1|4.4e-1586.96PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+][more]
gi|747102560|ref|XP_011099448.1|4.4e-1586.96PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0017150tRNA dihydrouridine synthase activity
GO:0050660flavin adenine dinucleotide binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0002943 tRNA dihydrouridine synthesis
biological_process GO:0008033 tRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G006050.1CmoCh07G006050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 18..58
score: 1.
IPR013785Aldolase-type TIM barrelGENE3DG3DSA:3.20.20.70coord: 15..58
score: 2.
NoneNo IPR availableunknownSSF51395FMN-linked oxidoreductasescoord: 16..58
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G006050Cucumber (Chinese Long) v3cmocucB0993
CmoCh07G006050Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G006050Watermelon (97103) v2cmowmbB849
CmoCh07G006050Watermelon (97103) v2cmowmbB875
CmoCh07G006050Wax gourdcmowgoB1063
CmoCh07G006050Melon (DHL92) v3.5.1cmomeB793
CmoCh07G006050Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G006050Cucumber (Gy14) v1cgycmoB0233
CmoCh07G006050Cucumber (Gy14) v1cgycmoB0464
CmoCh07G006050Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G006050Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G006050Wild cucumber (PI 183967)cmocpiB850
CmoCh07G006050Wild cucumber (PI 183967)cmocpiB873
CmoCh07G006050Watermelon (Charleston Gray)cmowcgB755
CmoCh07G006050Cucumber (Chinese Long) v2cmocuB840
CmoCh07G006050Cucumber (Chinese Long) v2cmocuB865
CmoCh07G006050Melon (DHL92) v3.5.1cmomeB774
CmoCh07G006050Watermelon (97103) v1cmowmB816
CmoCh07G006050Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G006050Cucurbita pepo (Zucchini)cmocpeB810
CmoCh07G006050Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G006050Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G006050Bottle gourd (USVL1VR-Ls)cmolsiB793
CmoCh07G006050Cucumber (Gy14) v2cgybcmoB251
CmoCh07G006050Cucumber (Gy14) v2cgybcmoB843
CmoCh07G006050Melon (DHL92) v3.6.1cmomedB880
CmoCh07G006050Melon (DHL92) v3.6.1cmomedB896
CmoCh07G006050Silver-seed gourdcarcmoB0005
CmoCh07G006050Silver-seed gourdcarcmoB0088
CmoCh07G006050Silver-seed gourdcarcmoB0554