CmoCh07G005920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G005920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein BRICK1
Location	Cmo_Chr07 : 2670747 .. 2671424 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGAGCTGGAGGAATTACTAACGCCGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAGAACCGCGAGTTCATATCCCATATTTCCATTAATATCCGTCGTCTCTTTGATTTTCTCGTCCATTTTGGTAATCATCCTTGTTTCTCTCTATGTTCCTTTTGTGTTCTCTTACATCTATCTGTTATTGAGTGTTAGATCTCGTTATTTGATATTTGAACTTGACATTCTTGGAAATTTCCTTATATGAAATATCTGATTTGCTTAAGTTGTTCTAATTAGTTTCCTTTTAAAAACGATGCATTGGTAGTCTGATTCTGGAACTTTTGATTCCTTCATTTTAAGATTGAGAATTGCATCCCATGGTTCTTGATTTTTTCAATGAAGCGACTGTCATTGTTTTATCTTCCGGAAATTGGTTGGCTGCGCACCAACATGCCCTACGGGAATGATATGGAAATTAGAACTCAGTAGTGCTGTATTTTACTTGATGATCGGTTTCTAGGAACAGGAATATCCAGGTTTCTAACCTATTTCCTTGTTCCATCAGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAGCTCGATACGCTGGAGCGGCGGCTTGAAATGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAATCCATCTCTTTTTACCACTTAA

mRNA sequence

ATGGCTAGAGCTGGAGGAATTACTAACGCCGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAGAACCGCGAGTTCATATCCCATATTTCCATTAATATCCGTCGTCTCTTTGATTTTCTCGTCCATTTTGGTAATCATCCTTGTTTCTCTCTATGAACAGGAATATCCAGGTTTCTAACCTATTTCCTTGTTCCATCAGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAGCTCGATACGCTGGAGCGGCGGCTTGAAATGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAATCCATCTCTTTTTACCACTTAA

Coding sequence (CDS)

ATGGCTAGAGCTGGAGGAATTACTAACGCCGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAGAACCGCGAGTTCATATCCCATATTTCCATTAATATCCGTCGTCTCTTTGATTTTCTCGTCCATTTTGGTAATCATCCTTGTTTCTCTCTATGA

Homology

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BLAST of CmoCh07G005920 vs. Swiss-Prot
Match: BRK1_ARATH (Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-16
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MA+AGGITNAVNVGIAVQADWENREFISHIS+N+RRLF+FLV F
Sbjct: 1  MAKAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQF 44

[Close]

BLAST of CmoCh07G005920 vs. Swiss-Prot
Match: BRK1_MAIZE (Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-13
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          M R GG+ N VNVGIAVQADWENREFIS+IS+N+RRLFDFL+ F
Sbjct: 1  MGRGGGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRF 44

[Close]

BLAST of CmoCh07G005920 vs. Swiss-Prot
Match: BRK1_ORYSJ (Probable protein BRICK1 OS=Oryza sativa subsp. japonica GN=Os02g0829900 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-12
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 1  MARAGG--ITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGG  + N VNVGIAVQADWENREFIS+IS+N+RRLFDFL+ F
Sbjct: 1  MARAGGHGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRF 46

[Close]

BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A0L9T8C6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan319s002100 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-17
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFGNHPCFS 52
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV FG H  FS
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFGTHFSFS 51

[Close]

BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A0A0KG45_CUCSA (Protein BRICK1 OS=Cucumis sativus GN=Csa_6G497300 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.0e-16
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHF
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHF 44

[Close]

BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A059ALL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00599 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.2e-15
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV F
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQF 44

[Close]

BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A059ALB8_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I00598 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.2e-15
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV F
Sbjct: 46 MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQF 89

[Close]

BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A068U2I4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040153001 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.2e-15
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV F
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQF 44

[Close]

BLAST of CmoCh07G005920 vs. TAIR10
Match: AT2G22640.1 (AT2G22640.1 BRICK1, putative)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-17
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MA+AGGITNAVNVGIAVQADWENREFISHIS+N+RRLF+FLV F
Sbjct: 1  MAKAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQF 44

[Close]

BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|920679937|gb|KOM26822.1| (hypothetical protein LR48_Vigan319s002100 [Vigna angularis])

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-17
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFGNHPCFS 52
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV FG H  FS
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFGTHFSFS 51

[Close]

BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|658014726|ref|XP_008342688.1| (PREDICTED: protein BRICK 1-like [Malus domestica])

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFGN 47
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV FGN
Sbjct: 25 MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFGN 70

[Close]

BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|449451369|ref|XP_004143434.1| (PREDICTED: protein BRICK 1 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-16
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHF
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHF 44

[Close]

BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|356496693|ref|XP_003517200.1| (PREDICTED: protein BRICK 1 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV F
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQF 44

[Close]

BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|629088395|gb|KCW54648.1| (hypothetical protein EUGRSUZ_I00598, partial [Eucalyptus grandis])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHF 45
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV F
Sbjct: 46 MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQF 89

The following BLAST results are available for this feature:

BLAST of CmoCh07G005920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRK1_ARATH	4.2e-16	88.64	Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1	[more]
BRK1_MAIZE	4.3e-13	77.27	Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1	[more]
BRK1_ORYSJ	1.6e-12	78.26	Probable protein BRICK1 OS=Oryza sativa subsp. japonica GN=Os02g0829900 PE=3 SV=...	[more]

BLAST of CmoCh07G005920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9T8C6_PHAAN	3.4e-17	88.24	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan319s002100 PE=4 SV=1	[more]
A0A0A0KG45_CUCSA	5.0e-16	97.73	Protein BRICK1 OS=Cucumis sativus GN=Csa_6G497300 PE=4 SV=1	[more]
A0A059ALL2_EUCGR	7.2e-15	93.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00599 PE=4 SV=1	[more]
A0A059ALB8_EUCGR	7.2e-15	93.18	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I00598 PE=4 ...	[more]
A0A068U2I4_COFCA	7.2e-15	93.18	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040153001 PE=4 SV=1	[more]

BLAST of CmoCh07G005920 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22640.1	2.4e-17	88.64	BRICK1, putative	[more]

BLAST of CmoCh07G005920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|920679937\|gb\|KOM26822.1\|	4.9e-17	88.24	hypothetical protein LR48_Vigan319s002100 [Vigna angularis]	[more]
gi\|658014726\|ref\|XP_008342688.1\|	3.2e-16	93.48	PREDICTED: protein BRICK 1-like [Malus domestica]	[more]
gi\|449451369\|ref\|XP_004143434.1\|	7.1e-16	97.73	PREDICTED: protein BRICK 1 [Cucumis sativus]	[more]
gi\|356496693\|ref\|XP_003517200.1\|	1.0e-14	93.18	PREDICTED: protein BRICK 1 [Glycine max]	[more]
gi\|629088395\|gb\|KCW54648.1\|	1.0e-14	93.18	hypothetical protein EUGRSUZ_I00598, partial [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007015	actin filament organization

Vocabulary: **Cellular Component**
Term	Definition
GO:0031209	SCAR complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0032403	protein complex binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045010	actin nucleation
biological_process	GO:0051259	protein oligomerization
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0007015	actin filament organization
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0031209	SCAR complex
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0032403	protein complex binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0044877	macromolecular complex binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G005920.1	CmoCh07G005920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
No results

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G005920	CmaCh07G005870	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G005920	Csa6G497300	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G005920	MELO3C007697	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G005920	ClCG01G018190	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G005920	Lsi01G008280	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G005920	Cp4.1LG19g10220	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G005920	MELO3C007697.2	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G005920	Cla97C01G017470	Watermelon (97103) v2	cmowmbB849
CmoCh07G005920	Bhi03G001335	Wax gourd	cmowgoB1058
CmoCh07G005920	CsGy6G029070	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G005920	Carg18494	Silver-seed gourd	carcmoB0005

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G005920	Cucumber (Gy14) v1	cgycmoB0464
CmoCh07G005920	Cucurbita maxima (Rimu)	cmacmoB205
CmoCh07G005920	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G005920	Wild cucumber (PI 183967)	cmocpiB850
CmoCh07G005920	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G005920	Cucumber (Chinese Long) v2	cmocuB840
CmoCh07G005920	Melon (DHL92) v3.5.1	cmomeB774
CmoCh07G005920	Watermelon (Charleston Gray)	cmowcgB776
CmoCh07G005920	Watermelon (97103) v1	cmowmB806
CmoCh07G005920	Watermelon (97103) v1	cmowmB816
CmoCh07G005920	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G005920	Cucurbita pepo (Zucchini)	cmocpeB810
CmoCh07G005920	Cucurbita pepo (Zucchini)	cmocpeB830
CmoCh07G005920	Bottle gourd (USVL1VR-Ls)	cmolsiB793
CmoCh07G005920	Cucumber (Gy14) v2	cgybcmoB251
CmoCh07G005920	Melon (DHL92) v3.6.1	cmomedB880
CmoCh07G005920	Silver-seed gourd	carcmoB0088
CmoCh07G005920	Silver-seed gourd	carcmoB0554
CmoCh07G005920	Cucumber (Chinese Long) v3	cmocucB0993
CmoCh07G005920	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G005920	Watermelon (97103) v2	cmowmbB875
CmoCh07G005920	Wax gourd	cmowgoB1069
CmoCh07G005920	Cucurbita moschata (Rifu)	cmocmoB165
CmoCh07G005920	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G005920	Cucumber (Gy14) v1	cgycmoB0233