CmoCh07G005920 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAGAGCTGGAGGAATTACTAACGCCGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAGAACCGCGAGTTCATATCCCATATTTCCATTAATATCCGTCGTCTCTTTGATTTTCTCGTCCATTTTGGTAATCATCCTTGTTTCTCTCTATGTTCCTTTTGTGTTCTCTTACATCTATCTGTTATTGAGTGTTAGATCTCGTTATTTGATATTTGAACTTGACATTCTTGGAAATTTCCTTATATGAAATATCTGATTTGCTTAAGTTGTTCTAATTAGTTTCCTTTTAAAAACGATGCATTGGTAGTCTGATTCTGGAACTTTTGATTCCTTCATTTTAAGATTGAGAATTGCATCCCATGGTTCTTGATTTTTTCAATGAAGCGACTGTCATTGTTTTATCTTCCGGAAATTGGTTGGCTGCGCACCAACATGCCCTACGGGAATGATATGGAAATTAGAACTCAGTAGTGCTGTATTTTACTTGATGATCGGTTTCTAGGAACAGGAATATCCAGGTTTCTAACCTATTTCCTTGTTCCATCAGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAGCTCGATACGCTGGAGCGGCGGCTTGAAATGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAATCCATCTCTTTTTACCACTTAA ATGGCTAGAGCTGGAGGAATTACTAACGCCGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAGAACCGCGAGTTCATATCCCATATTTCCATTAATATCCGTCGTCTCTTTGATTTTCTCGTCCATTTTGGTAATCATCCTTGTTTCTCTCTATGAACAGGAATATCCAGGTTTCTAACCTATTTCCTTGTTCCATCAGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAGCTCGATACGCTGGAGCGGCGGCTTGAAATGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAATCCATCTCTTTTTACCACTTAA ATGGCTAGAGCTGGAGGAATTACTAACGCCGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAGAACCGCGAGTTCATATCCCATATTTCCATTAATATCCGTCGTCTCTTTGATTTTCTCGTCCATTTTGGTAATCATCCTTGTTTCTCTCTATGA
BLAST of CmoCh07G005920 vs. Swiss-Prot
Match: BRK1_ARATH (Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 4.2e-16 Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of CmoCh07G005920 vs. Swiss-Prot
Match: BRK1_MAIZE (Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 4.3e-13 Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1
BLAST of CmoCh07G005920 vs. Swiss-Prot
Match: BRK1_ORYSJ (Probable protein BRICK1 OS=Oryza sativa subsp. japonica GN=Os02g0829900 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.6e-12 Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1
BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A0L9T8C6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan319s002100 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 3.4e-17 Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A0A0KG45_CUCSA (Protein BRICK1 OS=Cucumis sativus GN=Csa_6G497300 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 5.0e-16 Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1
BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A059ALL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00599 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 7.2e-15 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A059ALB8_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I00598 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 7.2e-15 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of CmoCh07G005920 vs. TrEMBL
Match: A0A068U2I4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040153001 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 7.2e-15 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of CmoCh07G005920 vs. TAIR10
Match: AT2G22640.1 (AT2G22640.1 BRICK1, putative) HSP 1 Score: 84.3 bits (207), Expect = 2.4e-17 Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|920679937|gb|KOM26822.1| (hypothetical protein LR48_Vigan319s002100 [Vigna angularis]) HSP 1 Score: 94.7 bits (234), Expect = 4.9e-17 Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|658014726|ref|XP_008342688.1| (PREDICTED: protein BRICK 1-like [Malus domestica]) HSP 1 Score: 92.0 bits (227), Expect = 3.2e-16 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|449451369|ref|XP_004143434.1| (PREDICTED: protein BRICK 1 [Cucumis sativus]) HSP 1 Score: 90.9 bits (224), Expect = 7.1e-16 Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1
BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|356496693|ref|XP_003517200.1| (PREDICTED: protein BRICK 1 [Glycine max]) HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of CmoCh07G005920 vs. NCBI nr
Match: gi|629088395|gb|KCW54648.1| (hypothetical protein EUGRSUZ_I00598, partial [Eucalyptus grandis]) HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |