CmoCh07G005640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G005640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr07 : 2548610 .. 2548999 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTCTGGGGTTCGATTTATTATGGTTCTTGCTTTGTTGGCAGCCACGTGTATGGCTCAGGCGCCGGCGCCGGTACCGGCACCAGCACCGGCTCTGGGTCCTTCACAGCCTCTACCACCGGCACCAGCCACGCCGGCTTCTTCTCTGACTCCGGCGTCGCCCACACCCGCTCCGGAGACTAGTGCGCCTCCTCCAGCTCCAATTACTCCTTCTGGGTCTCCAGCCGGTGGTCCTGTTGTGCCACGTGTCGCTTCTCCTCCTTCATCAGCTCCGGAAGGACCGCCAGCAGACAAGCCAACCGGAGCAGCATCGCAGATAGGCGGAGCGGGTACGTTGGGGATGGCTGTGGCCGGAAGCCTGTTGGCAGTGATGTTAGCAGCGTAG

mRNA sequence

ATGGGATTCTCTGGGGTTCGATTTATTATGGTTCTTGCTTTGTTGGCAGCCACGTGTATGGCTCAGGCGCCGGCGCCGGTACCGGCACCAGCACCGGCTCTGGGTCCTTCACAGCCTCTACCACCGGCACCAGCCACGCCGGCTTCTTCTCTGACTCCGGCGTCGCCCACACCCGCTCCGGAGACTAGTGCGCCTCCTCCAGCTCCAATTACTCCTTCTGGGTCTCCAGCCGGTGGTCCTGTTGTGCCACGTGTCGCTTCTCCTCCTTCATCAGCTCCGGAAGGACCGCCAGCAGACAAGCCAACCGGAGCAGCATCGCAGATAGGCGGAGCGGGTACGTTGGGGATGGCTGTGGCCGGAAGCCTGTTGGCAGTGATGTTAGCAGCGTAG

Coding sequence (CDS)

ATGGGATTCTCTGGGGTTCGATTTATTATGGTTCTTGCTTTGTTGGCAGCCACGTGTATGGCTCAGGCGCCGGCGCCGGTACCGGCACCAGCACCGGCTCTGGGTCCTTCACAGCCTCTACCACCGGCACCAGCCACGCCGGCTTCTTCTCTGACTCCGGCGTCGCCCACACCCGCTCCGGAGACTAGTGCGCCTCCTCCAGCTCCAATTACTCCTTCTGGGTCTCCAGCCGGTGGTCCTGTTGTGCCACGTGTCGCTTCTCCTCCTTCATCAGCTCCGGAAGGACCGCCAGCAGACAAGCCAACCGGAGCAGCATCGCAGATAGGCGGAGCGGGTACGTTGGGGATGGCTGTGGCCGGAAGCCTGTTGGCAGTGATGTTAGCAGCGTAG

Homology

[Close]

BLAST of CmoCh07G005640 vs. TrEMBL
Match: A0A0A0KG74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499150 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-18
Identity = 75/155 (48.39%), Postives = 96/155 (61.94%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAP-------------VPAPAPALGPSQPLPPAPATP 60
           MGFSGVRF+++ ALL   CMAQAPAP              PAP+P + P  P P     P
Sbjct: 1   MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60

Query: 61  ASSLTPASPTPAPETSAPPPAPITP------SGSPAGGPVVPRVASP--------PSSAP 120
           + S TP SP+PAP+ ++P PAPI P      + +P+GGPV+P +ASP        PS AP
Sbjct: 61  SPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPSGGPVLPPIASPPSPTGMEVPSPAP 120

Query: 121 EGPPADKPTGAASQIGGAGTLGMAVAGSLLAVMLA 129
           +GP AD P GA S IGGA TLG+A+AG+L  V+L+
Sbjct: 121 QGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155

[Close]

BLAST of CmoCh07G005640 vs. NCBI nr
Match: gi|700193516|gb|KGN48720.1| (hypothetical protein Csa_6G499150 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 75/155 (48.39%), Postives = 96/155 (61.94%), Query Frame = 1


Query: 1   MGFSGVRFIMVLALLAATCMAQAPAP-------------VPAPAPALGPSQPLPPAPATP 60
           MGFSGVRF+++ ALL   CMAQAPAP              PAP+P + P  P P     P
Sbjct: 1   MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60

Query: 61  ASSLTPASPTPAPETSAPPPAPITP------SGSPAGGPVVPRVASP--------PSSAP 120
           + S TP SP+PAP+ ++P PAPI P      + +P+GGPV+P +ASP        PS AP
Sbjct: 61  SPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPSGGPVLPPIASPPSPTGMEVPSPAP 120

Query: 121 EGPPADKPTGAASQIGGAGTLGMAVAGSLLAVMLA 129
           +GP AD P GA S IGGA TLG+A+AG+L  V+L+
Sbjct: 121 QGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155

The following BLAST results are available for this feature:

BLAST of CmoCh07G005640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G005640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG74_CUCSA	2.7e-18	48.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499150 PE=4 SV=1	[more]

BLAST of CmoCh07G005640 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh07G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193516\|gb\|KGN48720.1\|	3.8e-18	48.39	hypothetical protein Csa_6G499150 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G005640.1	CmoCh07G005640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G005640	Cucurbita pepo (Zucchini)	cmocpeB828
CmoCh07G005640	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G005640	Cucurbita pepo (Zucchini)	cmocpeB813
CmoCh07G005640	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G005640	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G005640	Bottle gourd (USVL1VR-Ls)	cmolsiB793
CmoCh07G005640	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G005640	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G005640	Silver-seed gourd	carcmoB0554
CmoCh07G005640	Silver-seed gourd	carcmoB1029
CmoCh07G005640	Cucumber (Chinese Long) v3	cmocucB0993
CmoCh07G005640	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G005640	Watermelon (97103) v2	cmowmbB849
CmoCh07G005640	Wax gourd	cmowgoB1065
CmoCh07G005640	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G005640	Cucurbita moschata (Rifu)	cmocmoB163
CmoCh07G005640	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G005640	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G005640	Cucumber (Gy14) v1	cgycmoB0464
CmoCh07G005640	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G005640	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G005640	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G005640	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G005640	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G005640	Melon (DHL92) v3.5.1	cmomeB774
CmoCh07G005640	Watermelon (Charleston Gray)	cmowcgB776
CmoCh07G005640	Watermelon (97103) v1	cmowmB816