CmoCh07G003190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G003190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chaperonin-like RbcX protein
Location	Cmo_Chr07 : 1517039 .. 1517584 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTTAAACTGATGGTTAAATTCATGGCTGGGGGGACAGCATTGCGCATACTAGAGGTGAGTCTGTTCACTTGAGACTTGATTAATGCTTCCCCCACCGTGGAAACGCTCATAAGCTGGCAAGTTATTTGATTCCAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCATCCAAAGTAAGGAAATTGGTCTGTTTCTCTACCATTTTCTTAATAGCATTATGTGAAGTTGTTTGGTAAGTAGCTGCGATTCATTATTTTCAGATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGAGGAAATTCTGCACCTTCTGTTTTTGCTATTATTATACATGAATTCAGTGTATTTATAATATGATCATGCCACTCCACTTGTTGGGGCTTTGTTCCAAACAAAAATTGGTAAACTCAATCATGGAAATATATACAGATTGAATTGTTCTTGTGAGTTACAAAATGTCATAATGAAATAGAACAG

mRNA sequence

ATGAGCCTTAAACTGATGGTTAAATTCATGGCTGGGGGGACAGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCATCCAAAATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGAGGAAATTCTGCACCTTCTGTTTTTGCTATTATTATACATGAATTCAGTGTATTTATAATATGATCATGCCACTCCACTTGTTGGGGCTTTGTTCCAAACAAAAATTGGTAAACTCAATCATGGAAATATATACAGATTGAATTGTTCTTGTGAGTTACAAAATGTCATAATGAAATAGAACAG

Coding sequence (CDS)

ATGAGCCTTAAACTGATGGTTAAATTCATGGCTGGGGGGACAGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCATCCAAAATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGA

Homology

[Close]

BLAST of CmoCh07G003190 vs. TrEMBL
Match: A0A0A0KMZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G513450 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.0e-16
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 65
           ALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTR+MREY+TETSP D EK
Sbjct: 123 ALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CmoCh07G003190 vs. TrEMBL
Match: A0A061GHA9_THECC (Chaperonin-like RbcX protein OS=Theobroma cacao GN=TCM_030292 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.0e-16
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 65
           ALRILEVRSAYCK+DFEWDNLKRLASKMV ESNT+LMREYV ETSP  EK
Sbjct: 122 ALRILEVRSAYCKHDFEWDNLKRLASKMVDESNTKLMREYVLETSPATEK 171

[Close]

BLAST of CmoCh07G003190 vs. TrEMBL
Match: B9HZA6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01520g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-14
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 13  GTALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAE 64
           G A+RILEVRSAYCKNDFEWDNLKRL+ KMV ESNT LMR+YV ETSP  E
Sbjct: 119 GLAMRILEVRSAYCKNDFEWDNLKRLSVKMVDESNTSLMRDYVVETSPTKE 169

[Close]

BLAST of CmoCh07G003190 vs. TrEMBL
Match: A0A0D2UKJ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G012000 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-14
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAE 64
           ALRILEVRSAYCK DFEWDNLKRLA KMV ESNT+LMREYV ETSP  E
Sbjct: 130 ALRILEVRSAYCKRDFEWDNLKRLAFKMVDESNTKLMREYVLETSPATE 178

[Close]

BLAST of CmoCh07G003190 vs. TrEMBL
Match: V7BRP4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G146300g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 65
           ALRI+EVRSAYCKNDFEWDNLKRLA KMV ESNTRLM EYV ET+ ++EK
Sbjct: 121 ALRIMEVRSAYCKNDFEWDNLKRLALKMVTESNTRLMTEYVLETTIESEK 170

[Close]

BLAST of CmoCh07G003190 vs. TAIR10
Match: AT4G04330.1 (AT4G04330.1 Chaperonin-like RbcX protein)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-16
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS 60
           ALRILEVRSAYCKNDFEWDN+KRLA K V +SNTRLMREYV ETS
Sbjct: 122 ALRILEVRSAYCKNDFEWDNMKRLAFKNVDDSNTRLMREYVLETS 166

[Close]

BLAST of CmoCh07G003190 vs. NCBI nr
Match: gi|659079034|ref|XP_008440039.1| (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 65
           ALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Sbjct: 123 ALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CmoCh07G003190 vs. NCBI nr
Match: gi|449433988|ref|XP_004134778.1| (PREDICTED: uncharacterized protein LOC101222925 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 65
           ALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTR+MREY+TETSP D EK
Sbjct: 123 ALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CmoCh07G003190 vs. NCBI nr
Match: gi|590626426|ref|XP_007026166.1| (Chaperonin-like RbcX protein [Theobroma cacao])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 65
           ALRILEVRSAYCK+DFEWDNLKRLASKMV ESNT+LMREYV ETSP  EK
Sbjct: 122 ALRILEVRSAYCKHDFEWDNLKRLASKMVDESNTKLMREYVLETSPATEK 171

[Close]

BLAST of CmoCh07G003190 vs. NCBI nr
Match: gi|470118350|ref|XP_004295294.1| (PREDICTED: uncharacterized protein LOC101305153 [Fragaria vesca subsp. vesca])

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1


Query: 15  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS 60
           ALRILEVRSAYCKNDFEWDNLKRLASKMV ESNTRLMR+YV ETS
Sbjct: 124 ALRILEVRSAYCKNDFEWDNLKRLASKMVDESNTRLMRDYVLETS 168

[Close]

BLAST of CmoCh07G003190 vs. NCBI nr
Match: gi|224113745|ref|XP_002316559.1| (hypothetical protein POPTR_0011s01520g [Populus trichocarpa])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 13  GTALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAE 64
           G A+RILEVRSAYCKNDFEWDNLKRL+ KMV ESNT LMR+YV ETSP  E
Sbjct: 119 GLAMRILEVRSAYCKNDFEWDNLKRLSVKMVDESNTSLMRDYVVETSPTKE 169

The following BLAST results are available for this feature:

BLAST of CmoCh07G003190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G003190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMZ4_CUCSA	8.0e-16	88.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G513450 PE=4 SV=1	[more]
A0A061GHA9_THECC	8.0e-16	88.00	Chaperonin-like RbcX protein OS=Theobroma cacao GN=TCM_030292 PE=4 SV=1	[more]
B9HZA6_POPTR	1.2e-14	80.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01520g PE=4 SV=1	[more]
A0A0D2UKJ5_GOSRA	2.0e-14	85.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G012000 PE=4 SV=1	[more]
V7BRP4_PHAVU	4.4e-14	82.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G146300g PE=4 SV=1	[more]

BLAST of CmoCh07G003190 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G04330.1	2.5e-16	86.67	Chaperonin-like RbcX protein	[more]

BLAST of CmoCh07G003190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659079034\|ref\|XP_008440039.1\|	2.3e-16	90.20	PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]	[more]
gi\|449433988\|ref\|XP_004134778.1\|	1.1e-15	88.24	PREDICTED: uncharacterized protein LOC101222925 [Cucumis sativus]	[more]
gi\|590626426\|ref\|XP_007026166.1\|	1.1e-15	88.00	Chaperonin-like RbcX protein [Theobroma cacao]	[more]
gi\|470118350\|ref\|XP_004295294.1\|	1.3e-14	93.33	PREDICTED: uncharacterized protein LOC101305153 [Fragaria vesca subsp. vesca]	[more]
gi\|224113745\|ref\|XP_002316559.1\|	1.7e-14	80.39	hypothetical protein POPTR_0011s01520g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003435	Chaperonin_RcbX

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009718	anthocyanin-containing compound biosynthetic process
biological_process	GO:0061077	chaperone-mediated protein folding
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0044183	protein binding involved in protein folding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G003190.1	CmoCh07G003190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 15..58 score: 2.
None	No IPR available	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 15..59 score: 1.1
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN	coord: 15..59 score: 1.1
None	No IPR available	unknown	SSF158615	RbcX-like	coord: 13..59 score: 9.55

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G003190	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G003190	Watermelon (97103) v2	cmowmbB849
CmoCh07G003190	Wax gourd	cmowgoB1051
CmoCh07G003190	Cucurbita moschata (Rifu)	cmocmoB132
CmoCh07G003190	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G003190	Cucurbita maxima (Rimu)	cmacmoB162
CmoCh07G003190	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G003190	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G003190	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G003190	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G003190	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G003190	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G003190	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G003190	Watermelon (97103) v1	cmowmB816
CmoCh07G003190	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G003190	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G003190	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G003190	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G003190	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G003190	Silver-seed gourd	carcmoB0888
CmoCh07G003190	Silver-seed gourd	carcmoB1250