CmoCh07G003180 (gene) Cucurbita moschata (Rifu)

NameCmoCh07G003180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChaperonin-like RbcX protein
LocationCmo_Chr07 : 1516336 .. 1516974 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGTGGGTTCTCTCTTTCTATTTCTTTCTGTCTTTCCATTTCATATACACAGATTTTGTTCGTTCCTTTGCTTATCTATAAATTCATAATCAGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTATTACTCTGTTTTAATTGCTCTGCGATGTTGTTGGTATTGATTCTTGTTCTGGTAGAACAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA

mRNA sequence

GAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA

Coding sequence (CDS)

ATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA
BLAST of CmoCh07G003180 vs. TrEMBL
Match: A0A0A0KMZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G513450 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-49
Identity = 100/122 (81.97%), Postives = 107/122 (87.70%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES ARILSPT FPSLF  PNLNR N  PV P K  A K +RLHC KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SL 123
           +L
Sbjct: 121 AL 122

BLAST of CmoCh07G003180 vs. TrEMBL
Match: W9RY31_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014162 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-37
Identity = 84/123 (68.29%), Postives = 92/123 (74.80%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPV-WPKKAEASKSLRLHCHKMYVPGFGEASPE 60
           MES A +    H  S      L R+  +P  WP K   S S RL+C KMYVPGFGEASPE
Sbjct: 1   MESAATVQPLNHQLSFLFPTKLIRTKASPCRWPSKPATSHSTRLYCQKMYVPGFGEASPE 60

Query: 61  AKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRH 120
           AKAAKNLHNFFTY+AVRIV AQL+SYNPEA+ ELMEFL RHSLNDGDKF +NLMRESSRH
Sbjct: 61  AKAAKNLHNFFTYIAVRIVAAQLQSYNPEAYEELMEFLGRHSLNDGDKFCANLMRESSRH 120

Query: 121 KSL 123
           K L
Sbjct: 121 KGL 123

BLAST of CmoCh07G003180 vs. TrEMBL
Match: A0A151T6T0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017279 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-37
Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFPR-PNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPE 60
           MES A IL  +  P ++P  PN N++   P WP K   S+  RLHC KM+VPGFGEASPE
Sbjct: 1   MESSA-ILPLSQLPYVYPATPNTNKAY--PFWPCKRRTSQPTRLHCSKMFVPGFGEASPE 60

Query: 61  AKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRH 120
           AKAAKNLHNFFTYVAV+IV AQLESYNPEA+ ELMEFL RHSLNDGDKF +++ RESSRH
Sbjct: 61  AKAAKNLHNFFTYVAVKIVAAQLESYNPEAYEELMEFLSRHSLNDGDKFCASMFRESSRH 120

Query: 121 KSL 123
           K+L
Sbjct: 121 KNL 120

BLAST of CmoCh07G003180 vs. TrEMBL
Match: B9RXG0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903570 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-37
Identity = 83/117 (70.94%), Postives = 93/117 (79.49%), Query Frame = 1

Query: 7   ILSPTHFPSLFPRPNLNRSNFNPVWP-KKAEASKSLRLHCHKMYVPGFGEASPEAKAAKN 66
           +LSP       P+ N N++   P WP KK   ++S RL C KMYVPGFGEASPEAKAAKN
Sbjct: 6   VLSPCQLSVCSPKSNWNKAY--PSWPCKKLRTAQSTRLRCQKMYVPGFGEASPEAKAAKN 65

Query: 67  LHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSL 123
           LHNFFTYVAVRIVTAQL+SYNPEA+ ELM FL RHSLNDGD+F +NLMRESSRHKSL
Sbjct: 66  LHNFFTYVAVRIVTAQLQSYNPEAYEELMGFLSRHSLNDGDEFCANLMRESSRHKSL 120

BLAST of CmoCh07G003180 vs. TrEMBL
Match: A0A0J8BW14_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185580 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.8e-36
Identity = 84/124 (67.74%), Postives = 98/124 (79.03%), Query Frame = 1

Query: 1   MESCA--RILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASP 60
           MES A  R+ SP  F  L P+PN  +S   P  P K   S+   +HC+KM+VPGFGEASP
Sbjct: 1   MESSAIFRLSSPPTF--LSPKPNTIKSL--PPRPWKHRTSQPTHVHCNKMFVPGFGEASP 60

Query: 61  EAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSR 120
           EAKAAKNLH FFTY+AV+IV AQL+SYNPEAHA+LMEFLDRHSLNDGDKF ++LMRESS+
Sbjct: 61  EAKAAKNLHQFFTYIAVKIVAAQLQSYNPEAHADLMEFLDRHSLNDGDKFCADLMRESSK 120

Query: 121 HKSL 123
           HKSL
Sbjct: 121 HKSL 120

BLAST of CmoCh07G003180 vs. TAIR10
Match: AT4G04330.1 (AT4G04330.1 Chaperonin-like RbcX protein)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-30
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES + +L  ++   L P+         P+  + +   K  R+  +KMYVPGFGEASPEA
Sbjct: 1   MESSSSLLHHSYLSYLNPKFGKRPLVSYPLM-QSSRKCKQTRICSNKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAK+LH+FFTYVAVRIV+AQLESYNPEA+ EL EFLD +S++DGDKF + LMR SSRH 
Sbjct: 61  KAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHM 120

Query: 121 SL 123
           +L
Sbjct: 121 NL 121

BLAST of CmoCh07G003180 vs. NCBI nr
Match: gi|659079034|ref|XP_008440039.1| (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50
Identity = 102/122 (83.61%), Postives = 109/122 (89.34%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES ARILSPT FPS+F  PNLNR N  PV P K  ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. NCBI nr
Match: gi|449433988|ref|XP_004134778.1| (PREDICTED: uncharacterized protein LOC101222925 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-49
Identity = 100/122 (81.97%), Postives = 107/122 (87.70%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES ARILSPT FPSLF  PNLNR N  PV P K  A K +RLHC KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SL 123
           +L
Sbjct: 121 AL 122

BLAST of CmoCh07G003180 vs. NCBI nr
Match: gi|1009108550|ref|XP_015885244.1| (PREDICTED: uncharacterized protein LOC107420723 [Ziziphus jujuba])

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39
Identity = 86/124 (69.35%), Postives = 96/124 (77.42%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFP-RPNLNRSNFNPV-WPKKAEASKSLRLHCHKMYVPGFGEASP 60
           MES A +   +    LFP +PN  R+ F P  WP K   S+  RLHC KMYVPGFGEASP
Sbjct: 1   MESSAAVQPVSQLSFLFPTKPNTKRNTFYPSSWPSKPRTSRPTRLHCQKMYVPGFGEASP 60

Query: 61  EAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSR 120
           EAKAAKNLH+FFTY+AVRIV AQLESYNPEA+ ELMEF+ RHSLNDGDKF +NLMRESSR
Sbjct: 61  EAKAAKNLHSFFTYIAVRIVLAQLESYNPEAYEELMEFIGRHSLNDGDKFCANLMRESSR 120

Query: 121 HKSL 123
           HK L
Sbjct: 121 HKGL 124

BLAST of CmoCh07G003180 vs. NCBI nr
Match: gi|694351271|ref|XP_009357485.1| (PREDICTED: uncharacterized protein LOC103948211 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 165.2 bits (417), Expect = 7.4e-38
Identity = 85/125 (68.00%), Postives = 97/125 (77.60%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFP-RPNLNRSNFNPVW--PKKAEASKSLRLHCHKMYVPGFGEAS 60
           MES A IL  +  PS+FP +PN +   +NP W    K  AS+  R+HCHKMYVPGFGEAS
Sbjct: 1   MESSASILPLSQLPSVFPQKPNRSNLPYNPSWLSNSKPRASRPPRMHCHKMYVPGFGEAS 60

Query: 61  PEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESS 120
           PEAKAA NLH+FFTYVAV IV AQLESYN EA+ ELMEFL R+SLNDGD+F +NLMRESS
Sbjct: 61  PEAKAANNLHSFFTYVAVSIVCAQLESYNTEAYEELMEFLSRNSLNDGDQFCANLMRESS 120

Query: 121 RHKSL 123
           RHK L
Sbjct: 121 RHKGL 125

BLAST of CmoCh07G003180 vs. NCBI nr
Match: gi|657984028|ref|XP_008384097.1| (PREDICTED: uncharacterized protein LOC103446745 [Malus domestica])

HSP 1 Score: 165.2 bits (417), Expect = 7.4e-38
Identity = 85/125 (68.00%), Postives = 97/125 (77.60%), Query Frame = 1

Query: 1   MESCARILSPTHFPSLFP-RPNLNRSNFNPVW--PKKAEASKSLRLHCHKMYVPGFGEAS 60
           MES A IL  +  PS+FP +PN +   +NP W    K  AS+  R+HCHKMYVPGFGEAS
Sbjct: 1   MESSAAILPLSQLPSVFPQKPNRSNLPYNPSWLSNSKPRASRPPRMHCHKMYVPGFGEAS 60

Query: 61  PEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESS 120
           PEAKAA NLH+FFTYVAV IV AQLESYN EA+ ELMEFL R+SLNDGD+F +NLMRESS
Sbjct: 61  PEAKAANNLHSFFTYVAVSIVCAQLESYNTEAYEELMEFLSRNSLNDGDQFCANLMRESS 120

Query: 121 RHKSL 123
           RHK L
Sbjct: 121 RHKGL 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KMZ4_CUCSA5.0e-4981.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G513450 PE=4 SV=1[more]
W9RY31_9ROSA2.0e-3768.29Uncharacterized protein OS=Morus notabilis GN=L484_014162 PE=4 SV=1[more]
A0A151T6T0_CAJCA2.5e-3768.29Uncharacterized protein OS=Cajanus cajan GN=KK1_017279 PE=4 SV=1[more]
B9RXG0_RICCO2.5e-3770.94Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903570 PE=4 SV=1[more]
A0A0J8BW14_BETVU2.8e-3667.74Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185580 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT4G04330.11.6e-3056.56 Chaperonin-like RbcX protein[more]
Match NameE-valueIdentityDescription
gi|659079034|ref|XP_008440039.1|2.9e-5083.61PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo][more]
gi|449433988|ref|XP_004134778.1|7.1e-4981.97PREDICTED: uncharacterized protein LOC101222925 [Cucumis sativus][more]
gi|1009108550|ref|XP_015885244.1|1.0e-3969.35PREDICTED: uncharacterized protein LOC107420723 [Ziziphus jujuba][more]
gi|694351271|ref|XP_009357485.1|7.4e-3868.00PREDICTED: uncharacterized protein LOC103948211 isoform X1 [Pyrus x bretschneide... [more]
gi|657984028|ref|XP_008384097.1|7.4e-3868.00PREDICTED: uncharacterized protein LOC103446745 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003435Chaperonin_RcbX
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0009718 anthocyanin-containing compound biosynthetic process
biological_process GO:0061077 chaperone-mediated protein folding
biological_process GO:0009409 response to cold
biological_process GO:0009651 response to salt stress
biological_process GO:0009414 response to water deprivation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0003674 molecular_function
molecular_function GO:0044183 protein binding involved in protein folding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G003180.1CmoCh07G003180.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003435Chaperonin-like RbcXPFAMPF02341RcbXcoord: 61..117
score: 3.5
NoneNo IPR availablePANTHERPTHR33791FAMILY NOT NAMEDcoord: 14..122
score: 9.1
NoneNo IPR availablePANTHERPTHR33791:SF1CHAPERONIN-LIKE RBCX PROTEINcoord: 14..122
score: 9.1
NoneNo IPR availableunknownSSF158615RbcX-likecoord: 53..118
score: 1.44