CmoCh07G002570 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G002570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 1264050 .. 1267187 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGAAGGGGAGAGAAAAAGGGAGGGAGAACTAATAGCTGTTGCAGTGGGCAGAGAGCCTACAAAAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGCTGACTATGTTCAACGGTATGTCCTCGGTCTTTACCTCTTTCACGGGCATAAACATATTTAATGTTCCACTAAGCGTTTTAATAATTCTTTTCGGTTCCTAAAGATTCATTCTTTTGAAAAGCAAGGAATAAACTTCCTTTTGAACATTCTTGCTGGAAAGGATTATAACGATTCAAACCTTTTCTCCGTTATGAATTTAGCAGAAAGATGCTGTTGCAGGAAATCCTGTCTGTGTTTTAGTCAAATTGTTAGTATAATTAAAAGTTGAGGAAGTAGAGATTTGTTTTCCTTCTAAGCTTGACTTTTAATCAAATTAGTAAAGAATGTTGTCTATGGATACAGACGCAGTAAACCAGAAACTCTGGTACCGATCAATCAAATCAGAGTTTTGCCATCTTATCCATTGATTTGTCTTCTTCATCAGGCAAAGTGGAGGAACTTGATTCTTGATAACTTTATAGGATTTTTAGGCCTTATTGCTCTCACACTTTCTTTTACTTTTTCTATTTAACCAATAATCTCATTTTTGTCTCACTCCACCTCCTCATCTGTACGTAGAATCTTCGGGTTTCTTGCCATCTCCCTCCCACTGAGCAGAACTACATACAAAGGGAGATGGGGATCATCCTTGGCTAATGACTTGTCACTCTAGCCAACTATGCCACCCTTGTCTTCTCTTTCAATTACTTATGTAGGGTCATTATCCTACACAAAGTGGGGATAATGGTCTAGTTTTCCATCGGCTAAAGTCTTCCCATATGACACTTTCTCATGGTGGGGTCCCTCTTAAGTTTTTTTAATGGTTAACCACAAGCTGGGGATAGGATTGTTTGGTGGACCTTGAGTGCCACGTGTCAAGATCATAGGTGGTGGTGATACAGAGGACTGATCCTCCCAATAAAGGCTTGTTGATGATGTTCAGATTGGAGGAGGTATGGAAAAAGTCCATATTCCAAATTCACCTTTTTCAAATGCTAGCATTAATGCCCATTGCCATTCTCTCGCAAGATCGTTTTCCCATTCGTACAAAGGCCATTTGGTCTGCCTCTACCTTTTTCTGCAGATTCTCTCTGCAACCGGTGCCTTATCAGAATTTTCTGTCATTTTATAACTTTCTCTTGGTCATCGAATATTTATGCTGTTTTCCCATCTTTTGTCCATTTCACTTTCTCGATACTAAAAGATATTACCCAAGCTGAAGCCTTCTTGGGTTTTTAATAGATGTAAGGAGTGGGGATTGAGAGCTCTGACTTAAAGGATGCTTTAACCATTGGACTATGCACTTATGTTTAGACAACTTAATTTAGATTTGGATGCTATTCCTCTCTAGCCTAAGGTTCTCTAGAAATTTTCAAATTAAGCTTGGACTTTGATTTTGCCCTCTGGCCTCTACCTCAGATTATGAAGCAAAAGAGTTGTCAAAGTAAAGGGGGGGAAATGCATTGGCCTTTGATTTTGCCCTCTGGCCTCTACCTCAGATTATGAAGCAAAAGAGTTGTCGAAGTAAAGGGGGGGCAATGCATTGGCCTTCGGATTCAAGCATGCCAAAATAGAGTATTGCTTTTTAAGCCTAGCTCGTAGGAAAATGCCTTTTTATGTTGTTGGGTAAACAAACCTTTACTGTTCGAAGCCGAAAGTGTGTTGGCGAAAAGAAATAAAAAAGTTACACGATTTAGATTTCCAATGTCACAAACGGCAATAGTATCTCTGCTGGATTTGCTTCAATGTCCTTTTTTGACCTTCGCAATAGCATTATTTTTTTAAAGCATGTGATTTTCTTCACCGTAGATATCAAAATGGAAATAAAAGCTCAATGATAATAGTGGTAATATTCCATGAGTTTTTTTCTTTTGAAAAAAACTTGTTTAGGTATGGCATTGTCTTTATATCAGTATCAACCTATATTTTTTAGACTTTTCAGACCACCTATCCTCTTTTTCTGTTTGCTTTTTGGTATTTCCTTTTTTTTTTTTTTTTTTTGGCAAAAATTTATTTCATAGTTTACAAGTTATAATTTTTTTTCTTGTTTGTATGATTTGATAAAACCCTGATAAATAGTATTTATGAGTGTATCATAGAAATCTATTCTAGGACTAAATTCTTATGTTTCTATAAATTATAGGGACCAATTTCTATGAAATAATACTAATTTCTATGTTGTTACTGTATTTGGTAAATTGATATAGGAAAGGTAATTCATATTATTCTAAATATAGGTGATGTGTGCAAATGTCTATTCATGGCACACGTGACAATCAGAGGAGTTCCATCAATTGAAAACTTTTGGAACGTCACGATTTCCACTAATATTTTATCTCACACCATTTAAGTTGTTATTTTATTAATTGAATTTGAAATCACTTGGATTATTGATGGTGTGGACACTAATCCGGCTTGTGCTTTTTGCAGGTCCAAGAAGGAAGCAACACAACATCCATTCGGTGTGGGCTTCATTTGCAAGCTAGCCCAGTGGAAGTAGTAAGATAGGCCTGGTACGCTCACAACTCTTAACTCATTCGTTTTCTTAGCCCACTCTCCGTTATTTCAAGAGAGAGAGACGTTAAAAATGCACTGAAAATGATCCAAAAAGCTTTTGGAAACTAAGCAATCATGATCAAACTCGACATTGTTTTTGTGTCTCTCAAATGCCATAGGATTCGGATAGAAACAGAAAGTGGGGGTTTCGCCTTTTTTTGAATTTATTTCAAGTTACCAAAATCCGCCATAAGTTGGGTTTGTATTTTCCGTTGGAATTGATCCATTGGGCATTGGACCACCCCCACCTTTCAACGGCCTCAAAAACCCTGTTTTAATTTCCCCCCCTTTCCCTCCAAACTATATCTGAATTTCAACTCCGTTTTCCTCTCAATTCTATATTATTTTATCATAAAACTTTATAGAAGAGACAAACAAGACCAACCGTCACATTTTTTGTTTGATACAATCATATCGGGTATTTTTGTAGCTTTTGGGCGCA

mRNA sequence

ATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGAAGGGGAGAGAAAAAGGGAGGGAGAACTAATAGCTGTTGCAGTGGGCAGAGAGCCTACAAAAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGCTGACTATGTTCAACGGTCCAAGAAGGAAGCAACACAACATCCATTCGGTGTGGGCTTCATTTGCAAGCTAGCCCAGTGGAAGTAGTAAGATAGGCCTGGTACGCTCACAACTCTTAACTCATTCGTTTTCTTAGCCCACTCTCCGTTATTTCAAGAGAGAGAGACGTTAAAAATGCACTGAAAATGATCCAAAAAGCTTTTGGAAACTAAGCAATCATGATCAAACTCGACATTGTTTTTGTGTCTCTCAAATGCCATAGGATTCGGATAGAAACAGAAAGTGGGGGTTTCGCCTTTTTTTGAATTTATTTCAAGTTACCAAAATCCGCCATAAGTTGGGTTTGTATTTTCCGTTGGAATTGATCCATTGGGCATTGGACCACCCCCACCTTTCAACGGCCTCAAAAACCCTGTTTTAATTTCCCCCCCTTTCCCTCCAAACTATATCTGAATTTCAACTCCGTTTTCCTCTCAATTCTATATTATTTTATCATAAAACTTTATAGAAGAGACAAACAAGACCAACCGTCACATTTTTTGTTTGATACAATCATATCGGGTATTTTTGTAGCTTTTGGGCGCA

Coding sequence (CDS)

ATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGAAGGGGAGAGAAAAAGGGAGGGAGAACTAATAGCTGTTGCAGTGGGCAGAGAGCCTACAAAAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGCTGACTATGTTCAACGGTCCAAGAAGGAAGCAACACAACATCCATTCGGTGTGGGCTTCATTTGCAAGCTAGCCCAGTGGAAGTAG
Homology
[Close]
BLAST of CmoCh07G002570 vs. TrEMBL
Match: A0A0A0KI11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517110 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-11
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 1  MLECSNSINYSDKDREGEGERKRE-----GELIAVAVGREPTKDISVSNIVAAKVTKEAD 60
          MLECSNSINYSDKDREG GE K E     G   +   G+   +DIS+SNIVAAKVTKE D
Sbjct: 15 MLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGD 74

[Close]
BLAST of CmoCh07G002570 vs. NCBI nr
Match: gi|700193999|gb|KGN49203.1| (hypothetical protein Csa_6G517110 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-11
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 1  MLECSNSINYSDKDREGEGERKRE-----GELIAVAVGREPTKDISVSNIVAAKVTKEAD 60
          MLECSNSINYSDKDREG GE K E     G   +   G+   +DIS+SNIVAAKVTKE D
Sbjct: 15 MLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGD 74

The following BLAST results are available for this feature:
BLAST of CmoCh07G002570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G002570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI11_CUCSA5.7e-1165.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517110 PE=4 SV=1[more]
BLAST of CmoCh07G002570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G002570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193999|gb|KGN49203.1|8.2e-1165.63hypothetical protein Csa_6G517110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G002570.1CmoCh07G002570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G002570CsaV3_6G049890Cucumber (Chinese Long) v3cmocucB1019
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G002570Cucurbita pepo (Zucchini)cmocpeB799
CmoCh07G002570Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G002570Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G002570Cucurbita pepo (Zucchini)cmocpeB818
CmoCh07G002570Cucurbita pepo (Zucchini)cmocpeB825
CmoCh07G002570Cucurbita pepo (Zucchini)cmocpeB826
CmoCh07G002570Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G002570Bottle gourd (USVL1VR-Ls)cmolsiB786
CmoCh07G002570Cucumber (Gy14) v2cgybcmoB133
CmoCh07G002570Cucumber (Gy14) v2cgybcmoB843
CmoCh07G002570Melon (DHL92) v3.6.1cmomedB875
CmoCh07G002570Melon (DHL92) v3.6.1cmomedB886
CmoCh07G002570Silver-seed gourdcarcmoB0046
CmoCh07G002570Silver-seed gourdcarcmoB0209
CmoCh07G002570Silver-seed gourdcarcmoB0888
CmoCh07G002570Silver-seed gourdcarcmoB1250
CmoCh07G002570Silver-seed gourdcarcmoB1270
CmoCh07G002570Cucumber (Chinese Long) v3cmocucB0989
CmoCh07G002570Watermelon (97103) v2cmowmbB849
CmoCh07G002570Watermelon (97103) v2cmowmbB858
CmoCh07G002570Wax gourdcmowgoB1051
CmoCh07G002570Wax gourdcmowgoB1075
CmoCh07G002570Cucurbita moschata (Rifu)cmocmoB036
CmoCh07G002570Cucurbita moschata (Rifu)cmocmoB132
CmoCh07G002570Cucurbita moschata (Rifu)cmocmoB190
CmoCh07G002570Cucurbita moschata (Rifu)cmocmoB349
CmoCh07G002570Cucurbita moschata (Rifu)cmocmoB400
CmoCh07G002570Cucurbita moschata (Rifu)cmocmoB444
CmoCh07G002570Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G002570Cucumber (Gy14) v1cgycmoB0043
CmoCh07G002570Cucurbita maxima (Rimu)cmacmoB240
CmoCh07G002570Cucurbita maxima (Rimu)cmacmoB430
CmoCh07G002570Cucurbita maxima (Rimu)cmacmoB535
CmoCh07G002570Cucurbita maxima (Rimu)cmacmoB629
CmoCh07G002570Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G002570Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G002570Wild cucumber (PI 183967)cmocpiB845
CmoCh07G002570Wild cucumber (PI 183967)cmocpiB873
CmoCh07G002570Watermelon (Charleston Gray)cmowcgB755
CmoCh07G002570Cucumber (Chinese Long) v2cmocuB865
CmoCh07G002570Melon (DHL92) v3.5.1cmomeB782
CmoCh07G002570Watermelon (Charleston Gray)cmowcgB761
CmoCh07G002570Watermelon (97103) v1cmowmB816