CmoCh07G002550 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G002550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 1259270 .. 1263906 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGTTTATTTAAGTTCGAAGCTATGGCTCGAGGGGGGTGTTTGATGAGGTTGCCTTGCATGAAATGGATTTGGGGGGCGGAGGCTTGGAAGTAGTTATTGGGAGATTTCGATGGCGTTGATGTGTGCGGTCGTGTCACAGTTCCCGATTACGATGGATCATCTGCAAAAGATTGGAGCAATGGTAATTCTTCAATTGATATTCCATTGCGGAGCTTAAATGATCGATCACAGTACCTAGCAGTTTTAGTTATAAAAAAGAAAAAAATGATAGGAGACTCTAGCTCCGGTAAGGAGAGCTGATCTTGCAAATTCTTCACTACATTGCTTACTTTTCCTGCCCTACAAAGTGAATGTTCAAGATAGCTAATGGGATTTTAAAAATTAGCATTTAGGGCAACGAATTTAATTTGGTTGAGCTTTGGGCAGAAAGTCTCAACTAGGAAGTAGGGAAGTTGTTTATTCATTTTCTTCTCGTCAATGGAACTGACCATCCCTTTCCATATGTCACCATTCATAAAAGATAATATACTAAGACTGAGGTGGAAGGCTAGCGATTTTGTACACGATTCAAATATTATTTATAAACAATATAGTATATTTTGTCTCAATTTAGCTTGCCGGCTATGTGAATAAGATAATGAAAAGAAGCTTAATGACGTATAGGCTAGGGATCAGGACATGAAAAAGTTGGTGAGTAACATGTTATGCTGTGGTGGGGCATGCTGATGCAGCTCGGAAATTCTGGATGGAATTTGAGATAAAAATGTGTCCTTCCATTGCATTTGGTGATCAGTTAATTCATTCTATGTTGTTTCTATTTTATAGGGAATTTCTGTCTTTTATTCTCTGGTACCACCTCCACCTAACCATTTGCTAAACAGGTATCTCCTTATACATGAACTGCAGATAAAGATCTTGAGATGAAAGTTTGACAGGTTCAACAGTCGACAAAGTTGAAGACTTGAATTCAGGGTATGATGCGTTCTTAAACTTTGTGAGATTACATGAACTGCAGATAAAGATCTTGAGATGAAAGTTTGACAGGTTCAACAGTCGACAAAGTTGAAGACTTGAATTCAGGGTATGATGCGTTCTTAAACTTTGTGAGATTACTTAGATAACGAGTGGTATTGATACTTTGTTAACTTATCCTTGTTAGTATCATTGCTCTCTTTGTGTACTGGGTTTGATTTTCTTATCCTTGTGTATGATATAGATATTTAATTTTTTGTGTCGTGTGTGAACCACAAAGGCTCCTTGAAAGCACTTCCATAAACAAATTTGTTCTATACTTTCGATTTTGTCACAACCTAATAAGCTCAAAGGATTCTTACGATATTCCTGTAGAGTTGAGGTGAGAGAAGCTCAGTGTCAGGACCCCGCTTGCATAGAAAGAGACCATAACGTCCATTTCTTGCTCTACTTTCAAGTTTTATTTACGCCTCACAATTTTACTTTTGACTTGAAAATGAATATGTTTTGAGTACTGACTTATGATACTACGATGTTATTTGGTTCATCGATTAGCTTTTTCATAAAAGCATCTGTTTTGTGCATGCTTCTAATGCTACAGTCATGGGCTGTTTGTGGTGTCACGACAGTCAGCAAATAGTATATCGCCTTTTTCCTTTTTTTTTTTCTTCCCGAGAATGAAGAATACTGAAATATCTGTTCTCTCTTCGCGTACTAATGTAAGCCAAATTCTATATGAAGATATTGGACACAAGTCCAATTCTGTTCTTCCACCTGCGGGAGAAGAAAAATTGAAGTTTCTATTTGGTGTGACTTGATCCAATTGACAGTGACATACTTTGTTAATCGTCTGTACGGACAATATCCTAAACCTTCTCCTGAACTCCTTGCGTTACTCATTCTCTCAGTTTACATTTGCTTATTTGTGAAATATATAAACTAATTATATTTATGTACCCATATATAAAGGACTCTGCTCTTCCTTGTTACAGAAACGTTTAATGGAAGAGTAGAAGAAATAATGCACTGCTTGCTTTTATAGATGTTTCTAAATACTCAGACGTCCTTGGACACAAGTTATAGCGCTTCAAGATTGCAAGGTGAGCTGCTATCCTTCTGAGCCAGAAACCCGTAAAAGGTTTAGTATACTTTATCTACGAGCTATTTTAATTTATTTTTTTTATTATCTGTGGATTTACGTTGCTAGGCTCCAACTTTTACTCCTGTCAAATTACAAGAAGAAACTACTACCGTCCATGAGTATTTATGTTATTCTTTAGTGGAATGAAAGAACAAGAAAAAAAAATACATGAGCCAGAAAGTGGCTACTAGAACAACAAACACAGACAGTGCTCCAACTGTTGCTAATCCCTAAAAAGATATAAATCGCTAAATAAATTGTTACAAGAAGCCCAAATAGAGGTAATGAAGTGAGCCTCCATCACACCTTCCGCAAGAACTACTCTTTCCATGAAAATCTCTTCTGCCCTTCTCCCACCAAATATTCCATAACACAGTGATGAAACCACTCTGCCACAGCCTTCTCTACTTCTCTCCTGAAAGGAAGGACGTGACAATACCTCTTTTCGAGCATAGAAGGACAATGGTCAGTCTGAGCCACAACAACTTTTAGTGACTGGAAAAACCTTAAGTGGAGATTCAAGGGAAAAGAGCAAAGCAAAAAGATTTTATTTAATTTGACTGGATTCTCTTCACATCATGGTGCGAGATGCATTGGTGTGTCAATGCTTTAGTCCTTGGCCGATATAATTTATTTGTTGCTTTTGCATGGCGGTGATTTTAGCATCTTAGATGCAGGAGATGGTAATCATAGTATAGATAACCATTCTCTTAATTCCAATGTTCAATAAATTAATTAAGAAACGATGAATGATTCCCTATTTGAGAGCTCAATTCTAAAACTATGCCCTGTTCGATTTTGGGAAGGTTAAATAATGTTATTCTCATCCCTTAATTTTACCATGCTCTTGCTGTACTCTTTTTTGATCTTTTCGTCTCTCTCATTTCTATGTCGGTCCCATGCAAATTTGAGTTTGATTGTCTTTACAGATATGGTAAATTTTATCAATTATGATCTTCTCACTTCAATGCAATATTAGAAATTTTGTTTCAATTCCATATTCTGATTCCTTATTCACATTCCTTTAAAGAGATTTCCTCACTCCGGTGTTCCACTTTTTTGTTTATCAATATAATCTGCCCCTACACACCCCGAAAGGAAAAGGGTGCAATCGATGGCTGAATATGGGCCATATTACATGGATCTAGTTTCATTTCCTTGTGCTGAAAACTGGGGCTGTAAGTTTTTCTCCTGGTATGTTTAACCTGGAAAATACAACCAATACTATCGTCAACTTTTAGATCTTAAATTCAACATTATGATTTAAGCTGCCATTCAGATGAGGACCTTCCAGGAACTTGGTAGATGGAATTCATATAGACTCGAGGGAACGTTAATGAACTTTAGTTTCATGATAATATTTTACAAATATCTTTTGAAATGTGCTTTTCTGAACATTCAGATTTTATCGACCATTTAGTATACTAAGTTGCATTTGGATAATTATTGCCCCACAGGAAAGTTTGTTAGTGGCTTAAATGATTTGATAGAATTTCATAATCAAAACTGCAAAGCTTTTCATTGCTATGCTCGAAGGGCCCTTATTTGAGCGCTGCGCCGCCCAAAATTGTGACCAGAGATGGATTTTTAAGAAATGAACAGATTATAAACTCAAAATAATTGTATTTATACATTCATTTTTCTTTCAATATTGTGTTTCGTCAACTTCATTGGCAAATAGCATGTTTTCCTCTCCTTTCTAACCTGTTATTGCGCTTAACAACCTTTTGCAGACGAATGTCACAGAGTTTCTTCAAATTCATCTGTTAGAAAATAGCTTCTGCTTACCCGAGAGCTGGGATTGTCTGCAAAAGTAAATTGGTAAATACTAGACACTGAGATTGCCGTGTGAGAAGATGGAAGAATAAGAAAGGGAGGAGTGAATATGTTAAGGATGACAGTCAAAGCTCTAGGATCAGTTTTTCTCTCGAAACAGAACCAATTAATAATATTGAAGATCATAGACAAGCATAGATGTACAAAAAATGCAAGTAGATGGCTTCTAATCAAGGATGCAGAAGAAAATGAGCAGGCAAAGAGTCAATCTGCCAATCAAGAAAATTCACTCAGATTTCACCAGAAGTACAAAAACCCACATGGGAGAGTGATTCAAATTTGAGCTAATCTGAATCTTTGCAGGTTCTTCAGGTGCAACAGCTTCAAATTTGCAAAACCCATCATCAAAATTTAGAGCATAGCTGCAAGGATCATATTGAAAATTGAACCTTCTTTTTCCTCCGTTCTTGATGGCTTTCTTCATCGCTGCTCTCATCCTCCAGAACAGTTTCCTGAATTGCTTCCTACTGTAAGCATTCATCCATTCTATGCCTCCCACCAATCCCATTTATACAGCGTCAATTTCTATACTCTAAAATTGCTGCTGCTAATCCCAAAAATGTCTTGAAATGAAGAGCAGGGTGCGATATTTTCTTGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACATCAAGAGTTGCAATGAGGTTTATGCAGGAGTGTCAGAACTAA

mRNA sequence

CTCTGTTTATTTAAGTTCGAAGCTATGGCTCGAGGGGGGTGTTTGATGAGGTTGCCTTGCATGAAATGGATTTGGGGGGCGGAGGCTTGGAAGTAGTTATTGGGAGATTTCGATGGCGTTGATGTGTGCGGTCGTGTCACAGTTCCCGATTACGATGGATCATCTGCAAAAGATTGGAGCAATGGGAATTTCTGTCTTTTATTCTCTGGTACCACCTCCACCTAACCATTTGCTAAACAGACGTCCTTGGACACAAGTTATAGCGCTTCAAGATTGCAAGAACCAATTAATAATATTGAAGATCATAGACAAGCATAGATGTACAAAAAATGCAAGTAGATGGCTTCTAATCAAGGATGCAGAAGAAAATGAGCAGGCAAAGAGTCAATCTGCCAATCAAGAAAATTCACTCAGATTTCACCAGAAGTACAAAAACCCACATGGGAGAAGCATAGCTGCAAGGATCATATTGAAAATTGAACCTTCTTTTTCCTCCGTTCTTGATGGCTTTCTTCATCGCTGCTCTCATCCTCCAGAACAGTTTCCTGAATTGCTTCCTACTGGTGCGATATTTTCTTGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACATCAAGAGTTGCAATGAGGTTTATGCAGGAGTGTCAGAACTAA

Coding sequence (CDS)

ATGGCGTTGATGTGTGCGGTCGTGTCACAGTTCCCGATTACGATGGATCATCTGCAAAAGATTGGAGCAATGGGAATTTCTGTCTTTTATTCTCTGGTACCACCTCCACCTAACCATTTGCTAAACAGACGTCCTTGGACACAAGTTATAGCGCTTCAAGATTGCAAGAACCAATTAATAATATTGAAGATCATAGACAAGCATAGATGTACAAAAAATGCAAGTAGATGGCTTCTAATCAAGGATGCAGAAGAAAATGAGCAGGCAAAGAGTCAATCTGCCAATCAAGAAAATTCACTCAGATTTCACCAGAAGTACAAAAACCCACATGGGAGAAGCATAGCTGCAAGGATCATATTGAAAATTGAACCTTCTTTTTCCTCCGTTCTTGATGGCTTTCTTCATCGCTGCTCTCATCCTCCAGAACAGTTTCCTGAATTGCTTCCTACTGGTGCGATATTTTCTTGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACATCAAGAGTTGCAATGAGGTTTATGCAGGAGTGTCAGAACTAA
Homology
[Close]
BLAST of CmoCh07G002550 vs. TrEMBL
Match: A0A0A0KK41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517120 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.9e-16
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 112 RSIAARIILKIEPSFSSVLDGFLHRCSHPPEQFPELLPTGAIFSWYLRKIIKDSQTQRQT 171
           +S+AARIILK E   +SVLDGFLHR SHPPEQF ELL T  I S YLRKIIKDSQTQRQT
Sbjct: 20  KSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVVIVSGYLRKIIKDSQTQRQT 79

Query: 172 SRVAM 177
             VA+
Sbjct: 80  IAVAI 84

[Close]
BLAST of CmoCh07G002550 vs. NCBI nr
Match: gi|700194000|gb|KGN49204.1| (hypothetical protein Csa_6G517120 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 112 RSIAARIILKIEPSFSSVLDGFLHRCSHPPEQFPELLPTGAIFSWYLRKIIKDSQTQRQT 171
           +S+AARIILK E   +SVLDGFLHR SHPPEQF ELL T  I S YLRKIIKDSQTQRQT
Sbjct: 20  KSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVVIVSGYLRKIIKDSQTQRQT 79

Query: 172 SRVAM 177
             VA+
Sbjct: 80  IAVAI 84

The following BLAST results are available for this feature:
BLAST of CmoCh07G002550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G002550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK41_CUCSA7.9e-1673.85Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517120 PE=4 SV=1[more]
BLAST of CmoCh07G002550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G002550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194000|gb|KGN49204.1|1.1e-1573.85hypothetical protein Csa_6G517120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G002550.1CmoCh07G002550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G002550CmaCh07G002650Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G002550Csa6G517120Cucumber (Chinese Long) v2cmocuB865
CmoCh07G002550Lsi01G003380Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G002550CsaV3_6G049900Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G002550Carg07798Silver-seed gourdcarcmoB0888
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G002550Silver-seed gourdcarcmoB1250
CmoCh07G002550Silver-seed gourdcarcmoB1270
CmoCh07G002550Cucumber (Chinese Long) v3cmocucB0989
CmoCh07G002550Watermelon (97103) v2cmowmbB849
CmoCh07G002550Watermelon (97103) v2cmowmbB858
CmoCh07G002550Wax gourdcmowgoB1051
CmoCh07G002550Wax gourdcmowgoB1075
CmoCh07G002550Cucurbita moschata (Rifu)cmocmoB036
CmoCh07G002550Cucurbita moschata (Rifu)cmocmoB132
CmoCh07G002550Cucurbita moschata (Rifu)cmocmoB190
CmoCh07G002550Cucurbita moschata (Rifu)cmocmoB349
CmoCh07G002550Cucurbita moschata (Rifu)cmocmoB400
CmoCh07G002550Cucurbita moschata (Rifu)cmocmoB444
CmoCh07G002550Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G002550Cucumber (Gy14) v1cgycmoB0043
CmoCh07G002550Cucurbita maxima (Rimu)cmacmoB240
CmoCh07G002550Cucurbita maxima (Rimu)cmacmoB430
CmoCh07G002550Cucurbita maxima (Rimu)cmacmoB535
CmoCh07G002550Cucurbita maxima (Rimu)cmacmoB629
CmoCh07G002550Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G002550Wild cucumber (PI 183967)cmocpiB845
CmoCh07G002550Wild cucumber (PI 183967)cmocpiB873
CmoCh07G002550Watermelon (Charleston Gray)cmowcgB755
CmoCh07G002550Melon (DHL92) v3.5.1cmomeB782
CmoCh07G002550Watermelon (Charleston Gray)cmowcgB761
CmoCh07G002550Watermelon (97103) v1cmowmB816
CmoCh07G002550Cucurbita pepo (Zucchini)cmocpeB799
CmoCh07G002550Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G002550Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G002550Cucurbita pepo (Zucchini)cmocpeB818
CmoCh07G002550Cucurbita pepo (Zucchini)cmocpeB825
CmoCh07G002550Cucurbita pepo (Zucchini)cmocpeB826
CmoCh07G002550Bottle gourd (USVL1VR-Ls)cmolsiB786
CmoCh07G002550Cucumber (Gy14) v2cgybcmoB133
CmoCh07G002550Cucumber (Gy14) v2cgybcmoB843
CmoCh07G002550Melon (DHL92) v3.6.1cmomedB875
CmoCh07G002550Melon (DHL92) v3.6.1cmomedB886
CmoCh07G002550Silver-seed gourdcarcmoB0046
CmoCh07G002550Silver-seed gourdcarcmoB0209