CmoCh07G002390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G002390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase (2.7.7.6)
Location	Cmo_Chr07 : 1181972 .. 1184088 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTATCTTAATGTCTCGGGTCAAAGAGATTCCTCAAGAGGAAATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGCATACTATTTTGGGTATGGCACTAATCTGATATATATGTATATATTTAATTTATCAACATCTAATACTATAATAGTTCATTGTCATCATCATCGTTACTGCCTTGCTAAATTATTTTTATACTATTTTGTCTGTGACTTGTTAAATTGTCTTACTGGACATTACATGTACCAGTTATATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGATAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGTCAGACTTGGAGACCTGTTTAAAATGGTTATTATTATTATTTGACAAGTTTGTTTTTTGGTTGCAAATATTATACTTTTCTCATTTTGAGAGTTTCTCATCATCTTTTATTTGTTTGAATCAGCTATTTAGAAAGTTAACAAGAGAAGGGATCGGTTACGTCCAAAGGGTCGCAATAAAAAAAAAAAAACAGGATCTTATACAAGTAAGGATCAATCCAGGCGAGGCTTATTCTGACACCTACACTCAGTGTGACATCCATTCATCACTGATTTTGGGCGTTTGTGCTTCAATTATTCCATTTCCTGACCATAATCAGGTTTGCTAGTTTCGCTATCTCTGACTGATTCATTTTTTTGTGTATTTATCCCCACGTGACACTTATCAATCTGTGGGTAAAGAAGCTATAGGAATATATGTCACCAACTAGCAATGTCAAATGGTATGCTCTACTTCAATTTCAAATAAAAGTTGTAGACTGTCTATATAAATAATCAAAGTTGGAAGCTTCAATAATTGGTATCTAAAAAAGTCTGGTTTGAAACTGGGTCAGCGAAATACGGGGAGTAGACGCCTTTCAGTGTGTGGGACTGGTTCATCTATTGAAGGTAGACATCTCAAATTCAATATTCTTTAGTTTTCCTTTCTTGTCGGGCTGTTCACGTCTGTGACTTGTTAGGCTCATCTAAAATGCTTTAATTAGTTTTTGGATTACTCTCTTATCCACCATTAATGTACTAGATTATCAGCTGCTCTCTTGGTCTAATAACTACAATTTTGTCGGTGAAGTCCCGTTCATTTATGATTTCTTTATATCTATATATATACACACACATCAGAATTGTTTGCTTGTAAATTAGTTTTATTGAATTTTATATTAAGTCTGTATGCAAATATTGGAGGATAAGATTAGACCCACATGGGGTGTTCCTTTTGCAATAACTACAAAAGACATTGCCTCCTTCTCATATGGACAAAGGTCATTTGAATAAGAAGGGTGCAACAATATCAAGATTCTTTTTTCTTTTTTTAATTTATTTATTAGGATAGCCTATATTTCAAACATATTTGTATATGTGTGATTTGTTTTTTTTTTTTTTAATGTAATTATGACGATTGTAGTTTTATAAGAATACAACTTCCCCATTAAAAATATGTATTTATGGGTGTGGGGTTTTAGTTTTATCTTTTAACTTTTTCAATAGTTGATAGTATTACTTTCAATAAATTCTTATATTTGGAGAAATGATTTTTGGAAGTTTAATAAAATTTTGTTATTTATCCCATTATCAGATATTTACATTATCTTTCATCCTCATATTTTCTTTAATTTAATTAATCAGTCTCAGAAGAAAATGGTAATGGAGATGTATTGCGGTCTTCTCTTGTTCATCAACTCTCACCTCATTTTTCTGCAGTTAATGTTGCGGATCAGCCCCTCTTCAAGCTAGTAGTTTTGTTCAGTATTTTCTGTCGATTGTCAGCTTGTTCAATTGACATTAGATGATTCCAATCACTAGACACAACATCTTTCTTCTCGGTGGTGAAACTATTATGTTGTCTAGGCTATGACTACTTTAGAAGATAAGCAGTCGGAAGTAGTTGCTTCCCTTCTTCTAGTTGCTTGCTCAGATTTTGAATCTTTATCTTAGGTTCGTCAATCTTCTTCAGGTTAGGACTACTCCAGATGATAAGCAGTCTGGAGCGGTTGCTCCCCTTATTCCAATTGCATACTCAGATTTTGAATCTTTATCTTAG

mRNA sequence

ATGTTTGTTATCTTAATGTCTCGGGTCAAAGAGATTCCTCAAGAGGAAATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGCATACTATTTTGGTTATATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGATAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGCGAGGCTTATTCTGACACCTACACTCAGTGTGACATCCATTCATCACTGATTTTGGGCGTTTGTGCTTCAATTATTCCATTTCCTGACCATAATCAGGTTAGGACTACTCCAGATGATAAGCAGTCTGGAGCGGTTGCTCCCCTTATTCCAATTGCATACTCAGATTTTGAATCTTTATCTTAG

Coding sequence (CDS)

ATGTTTGTTATCTTAATGTCTCGGGTCAAAGAGATTCCTCAAGAGGAAATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGCATACTATTTTGGTTATATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGATAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGCGAGGCTTATTCTGACACCTACACTCAGTGTGACATCCATTCATCACTGATTTTGGGCGTTTGTGCTTCAATTATTCCATTTCCTGACCATAATCAGGTTAGGACTACTCCAGATGATAAGCAGTCTGGAGCGGTTGCTCCCCTTATTCCAATTGCATACTCAGATTTTGAATCTTTATCTTAG

Homology

[Close]

BLAST of CmoCh07G002390 vs. Swiss-Prot
Match: RPB2_SOLLC (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-22
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           KEI Q+EMLPHVGVGE+CETK+AYYFGYIIH LLLCALGR AEDD +H+GNKRLD +G
Sbjct: 344 KEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 401

[Close]

BLAST of CmoCh07G002390 vs. Swiss-Prot
Match: NRPB2_ARATH (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana GN=NRPB2 PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-20
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           ++I Q+EMLPHVG+GE CETK+AYYFGYIIH LLLCALGR  EDD +H+GNKRLD +G
Sbjct: 345 RDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAG 402

[Close]

BLAST of CmoCh07G002390 vs. Swiss-Prot
Match: RPB2_MOUSE (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 4.1e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           KE+ Q+EMLPHVGV +FCETK+AY+ GY++H LLL ALGR   DD +H+GNKRLD +G
Sbjct: 340 KEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAG 397

[Close]

BLAST of CmoCh07G002390 vs. Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.1e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           KE+ Q+EMLPHVGV +FCETK+AY+ GY++H LLL ALGR   DD +H+GNKRLD +G
Sbjct: 340 KEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAG 397

[Close]

BLAST of CmoCh07G002390 vs. Swiss-Prot
Match: RPB2_DROME (DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 7.1e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           KEI Q+EMLPHVGV +FCETK+AY+ GY++H LLL +LGR   DD +H+GNKRLD +G
Sbjct: 341 KEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAG 398

[Close]

BLAST of CmoCh07G002390 vs. TrEMBL
Match: C5WR62_SORBI (DNA-directed RNA polymerase subunit beta OS=Sorghum bicolor GN=Sb01g013470 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEA 69
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G  
Sbjct: 389 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPL 448

Query: 70  YSDTYTQC 78
               +  C
Sbjct: 449 LGGLFRMC 456

[Close]

BLAST of CmoCh07G002390 vs. TrEMBL
Match: A0A0D9ZB24_9ORYZ (DNA-directed RNA polymerase subunit beta OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEA 69
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G  
Sbjct: 378 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPL 437

Query: 70  YSDTYTQC 78
               +  C
Sbjct: 438 LGGLFRMC 445

[Close]

BLAST of CmoCh07G002390 vs. TrEMBL
Match: M7YU29_TRIUA (DNA-directed RNA polymerase subunit beta OS=Triticum urartu GN=TRIUR3_08655 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEA 69
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G  
Sbjct: 378 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPL 437

Query: 70  YSDTYTQC 78
               +  C
Sbjct: 438 LGGLFRMC 445

[Close]

BLAST of CmoCh07G002390 vs. TrEMBL
Match: A0A0D3FLS5_9ORYZ (DNA-directed RNA polymerase subunit beta OS=Oryza barthii PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEA 69
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G  
Sbjct: 378 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPL 437

Query: 70  YSDTYTQC 78
               +  C
Sbjct: 438 LGGLFRMC 445

[Close]

BLAST of CmoCh07G002390 vs. TrEMBL
Match: A0A0E0NYV4_ORYRU (DNA-directed RNA polymerase subunit beta OS=Oryza rufipogon PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEA 69
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G  
Sbjct: 373 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPL 432

Query: 70  YSDTYTQC 78
               +  C
Sbjct: 433 LGGLFRMC 440

[Close]

BLAST of CmoCh07G002390 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-21
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           ++I Q+EMLPHVG+GE CETK+AYYFGYIIH LLLCALGR  EDD +H+GNKRLD +G
Sbjct: 345 RDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAG 402

[Close]

BLAST of CmoCh07G002390 vs. NCBI nr
Match: gi|474067873|gb|EMS54198.1| (DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu])

HSP 1 Score: 108.6 bits (270), Expect = 8.1e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEA 69
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G  
Sbjct: 378 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPL 437

Query: 70  YSDTYTQC 78
               +  C
Sbjct: 438 LGGLFRMC 445

[Close]

BLAST of CmoCh07G002390 vs. NCBI nr
Match: gi|242038711|ref|XP_002466750.1| (hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor])

HSP 1 Score: 108.6 bits (270), Expect = 8.1e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEA 69
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G  
Sbjct: 389 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPL 448

Query: 70  YSDTYTQC 78
               +  C
Sbjct: 449 LGGLFRMC 456

[Close]

BLAST of CmoCh07G002390 vs. NCBI nr
Match: gi|645237193|ref|XP_008225092.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Prunus mume])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LLLCALGR AEDD +H+GNKRLD +G
Sbjct: 344 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 401

[Close]

BLAST of CmoCh07G002390 vs. NCBI nr
Match: gi|659078699|ref|XP_008439860.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X2 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LLLCALGR AEDD +H+GNKRLD +G
Sbjct: 247 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 304

[Close]

BLAST of CmoCh07G002390 vs. NCBI nr
Match: gi|449433841|ref|XP_004134705.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 10  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG 68
           KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LLLCALGR AEDD +H+GNKRLD +G
Sbjct: 352 KEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 409

The following BLAST results are available for this feature:

BLAST of CmoCh07G002390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPB2_SOLLC	4.3e-22	81.03	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2...	[more]
NRPB2_ARATH	3.1e-20	74.14	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana GN=NRPB2 PE=1 S...	[more]
RPB2_MOUSE	4.1e-17	65.52	DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=1 SV=2	[more]
RPB2_HUMAN	4.1e-17	65.52	DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1	[more]
RPB2_DROME	7.1e-17	65.52	DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII14...	[more]

BLAST of CmoCh07G002390 vs. TrEMBL


Match Name	E-value	Identity	Description
C5WR62_SORBI	5.6e-21	70.59	DNA-directed RNA polymerase subunit beta OS=Sorghum bicolor GN=Sb01g013470 PE=3 ...	[more]
A0A0D9ZB24_9ORYZ	5.6e-21	70.59	DNA-directed RNA polymerase subunit beta OS=Oryza glumipatula PE=3 SV=1	[more]
M7YU29_TRIUA	5.6e-21	70.59	DNA-directed RNA polymerase subunit beta OS=Triticum urartu GN=TRIUR3_08655 PE=3...	[more]
A0A0D3FLS5_9ORYZ	5.6e-21	70.59	DNA-directed RNA polymerase subunit beta OS=Oryza barthii PE=3 SV=1	[more]
A0A0E0NYV4_ORYRU	5.6e-21	70.59	DNA-directed RNA polymerase subunit beta OS=Oryza rufipogon PE=3 SV=1	[more]

BLAST of CmoCh07G002390 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21710.1	1.7e-21	74.14	DNA-directed RNA polymerase family protein	[more]

BLAST of CmoCh07G002390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|474067873\|gb\|EMS54198.1\|	8.1e-21	70.59	DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu]	[more]
gi\|242038711\|ref\|XP_002466750.1\|	8.1e-21	70.59	hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]	[more]
gi\|645237193\|ref\|XP_008225092.1\|	3.1e-20	82.76	PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Prunus mume]	[more]
gi\|659078699\|ref\|XP_008439860.1\|	3.1e-20	82.76	PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X2 [Cucumis melo]	[more]
gi\|449433841\|ref\|XP_004134705.1\|	3.1e-20	82.76	PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis sativ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007642	RNA_pol_Rpb2_2
IPR015712	DNA-dir_RNA_pol_su2

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0032549	ribonucleoside binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G002390.1	CmoCh07G002390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007642	RNA polymerase Rpb2, domain 2	GENE3D	G3DSA:3.90.1110.10		coord: 8..54 score: 1.0
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 13..64 score: 3.7
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 5..68 score: 6.4
None	No IPR available	GENE3D	G3DSA:3.90.1100.10		coord: 83..100 score: 3.
None	No IPR available	PANTHER	PTHR20856:SF7	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2	coord: 5..68 score: 6.4
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 5..99 score: 4.58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G002390	CmaCh07G002440	Cucurbita maxima (Rimu)	cmacmoB875

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G002390	Cucumber (Chinese Long) v3	cmocucB0989
CmoCh07G002390	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G002390	Watermelon (97103) v2	cmowmbB849
CmoCh07G002390	Wax gourd	cmowgoB1051
CmoCh07G002390	Wax gourd	cmowgoB1080
CmoCh07G002390	Cucurbita moschata (Rifu)	cmocmoB036
CmoCh07G002390	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh07G002390	Cucurbita moschata (Rifu)	cmocmoB349
CmoCh07G002390	Cucurbita moschata (Rifu)	cmocmoB400
CmoCh07G002390	Cucurbita moschata (Rifu)	cmocmoB459
CmoCh07G002390	Cucurbita moschata (Rifu)	cmocmoB444
CmoCh07G002390	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G002390	Cucurbita maxima (Rimu)	cmacmoB240
CmoCh07G002390	Cucurbita maxima (Rimu)	cmacmoB430
CmoCh07G002390	Cucurbita maxima (Rimu)	cmacmoB535
CmoCh07G002390	Cucurbita maxima (Rimu)	cmacmoB629
CmoCh07G002390	Cucurbita maxima (Rimu)	cmacmoB672
CmoCh07G002390	Wild cucumber (PI 183967)	cmocpiB846
CmoCh07G002390	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G002390	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G002390	Cucumber (Chinese Long) v2	cmocuB836
CmoCh07G002390	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G002390	Melon (DHL92) v3.5.1	cmomeB771
CmoCh07G002390	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G002390	Watermelon (97103) v1	cmowmB816
CmoCh07G002390	Cucurbita pepo (Zucchini)	cmocpeB799
CmoCh07G002390	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G002390	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G002390	Cucurbita pepo (Zucchini)	cmocpeB818
CmoCh07G002390	Cucurbita pepo (Zucchini)	cmocpeB825
CmoCh07G002390	Cucurbita pepo (Zucchini)	cmocpeB826
CmoCh07G002390	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G002390	Bottle gourd (USVL1VR-Ls)	cmolsiB783
CmoCh07G002390	Cucumber (Gy14) v2	cgybcmoB133
CmoCh07G002390	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G002390	Melon (DHL92) v3.6.1	cmomedB875
CmoCh07G002390	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G002390	Silver-seed gourd	carcmoB0046
CmoCh07G002390	Silver-seed gourd	carcmoB0209
CmoCh07G002390	Silver-seed gourd	carcmoB0239
CmoCh07G002390	Silver-seed gourd	carcmoB0745
CmoCh07G002390	Silver-seed gourd	carcmoB0888
CmoCh07G002390	Silver-seed gourd	carcmoB1270