CmoCh07G002320 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGACGACGACGACGACCACCGCCACCGCCGCCGCAACCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTCCCCTCTCTCCTCCTCCTCCTCCTCCTAAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCCTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTGCTCTCCTACGGCTTCCCCATTGGAAACGAGCCTATCAATCCCCTTTTGCCTAAAGACGATGGCCGAAGAGGCTTGGATGCTTGGACCACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGCTCGCCGGTAGCAGCGACCACCATTCCAAACGAATAACAGTAACTCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACCCCAAATAAGGTGGGCGATCCATTAAAACATTTCATTTTATTTATTTATTTATTTAATTAGAAACTGATTTCTTTCTTTTTTTTTGGTGGGACAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGGTTTGTACTTTCAGATCTCTGTCTTTTTTTTCCCCTCCTCATCCAATAGAACAGTGAAACTGAAATAAAACAATCCAAAAAAAGGATAATTAAAAACCCTATTATTGTTTTTTTTTTTAATTTTTTTTTTTTTTTTCCAAATTTGCTGATGATTTTAACACAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGAGTGATAAGGAAGGAATGCAAATTTTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTAAGGCAAAACCCCTTCATTTATTATCATTAATGGAAGCTTTGGAAATTTAACATCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCAAATTCTGTTTTGTTTTAAATCCATGTAGGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGTCTCAATCCCACAAATTGAATTATTAGTATTTCATCATCATAAAACATTCTTAATTTTGTCAAAATTTTACTAATTTGTTCCATTTCTTGCAATGAATAGGGGATTTCGTTAAAGAAAATGGGCTGATGATGGGAGATTTAATTACCCTTTACGAGGATGATAGCAGGAACTTCGTGAGTTTCTTCTTCCTTTTTTTTTTCCCCTGAATAATTAGAATTTTATGGAAAAAGAAAAGTAATATAATAATGATGTGAGGGTTTTCCTAATATGGCTGCTGTGTAACGCTTGGAAAAAGGAAAAATAATAATAATAATAATAATAATATGGACAAATATAAAAGTGACTTTGAACATGTAAAATATGATGTTTTGTTCCTTGTTCCTTGTTCTTTGTTCCTATAAATAATTTCTCTGTTTTTTACAGATAGGATTTCCCCCATTTGTGGGGCCATCCCAGCCGTCGGTTACAAACCTTTTCCTCACCTTACATCGTTGATCTTGTTTTCTTTTTATTTTAAACTTTATTTTTTTAAAAATTCTAATTTAGCTTAATTAATTTCAATTATTGTCCTATAGTTTACAAACATGGGTTTCTAAACAAAATTACCATTAAATTACCCATAATTATTAGATGATTACATAAGTGGAAGATAATTAACTAAAACTTGAAAATTGGGTAGTTCTCTTTTAAAATTTTTTAAAAGTCATGTTCGTCGCTAGCTAACGCCTAATTTAATCCAGGAACATATTTGAATGAAAATGGAAAGGTTTGAATTTTGAGGAAGTTAAGATGAGTAATTTGTTGGTGTTGTTATGGATGAAAACAGTACGTGACGATTGATAAAGGGGAGAAGCATTTAAGCAGGGACGAAAATGAGGAGAAAAGGAAAGAGGCGGCGGCAGCAGCAGCAACAGCTTCAGCTTACCCAAACATGAACATTAAGGACGAAGAAGAGGATGACAATTTAGCTCTGTTGATCGAACAGCTCAAACACAGATCAGAAGACGACGAGCTCCCACAGTCACCTTGCGCCACTAGCCTCCTACTTTCACGTTCATACTTTGAGAGAGGGAGCTATACGGGAGCTGAAAAAGGGAATGACAACAATGATAATCATAATTATAATAATGATAATGATAATAATGATAATGATAATAATGGGAAGGAAGTGGAAGCCTTTGAAGATTGCTTTGGAGACCTTGAAATTCTGCCGGAAGTTAGTGGGTTCAAATTCCCTATTCTAGACTATTTGAGAAACGACAGAATATGA ATGGACGACGACGACGACGACCACCGCCACCGCCGCCGCAACCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTCCCCTCTCTCCTCCTCCTCCTCCTCCTAAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCCTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTGCTCTCCTACGGCTTCCCCATTGGAAACGAGCCTATCAATCCCCTTTTGCCTAAAGACGATGGCCGAAGAGGCTTGGATGCTTGGACCACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGCTCGCCGGTAGCAGCGACCACCATTCCAAACGAATAACAGTAACTCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACCCCAAATAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGAGTGATAAGGAAGGAATGCAAATTTTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGGGATTTCGTTAAAGAAAATGGGCTGATGATGGGAGATTTAATTACCCTTTACGAGGATGATAGCAGGAACTTCTACGTGACGATTGATAAAGGGGAGAAGCATTTAAGCAGGGACGAAAATGAGGAGAAAAGGAAAGAGGCGGCGGCAGCAGCAGCAACAGCTTCAGCTTACCCAAACATGAACATTAAGGACGAAGAAGAGGATGACAATTTAGCTCTGTTGATCGAACAGCTCAAACACAGATCAGAAGACGACGAGCTCCCACAGTCACCTTGCGCCACTAGCCTCCTACTTTCACGTTCATACTTTGAGAGAGGGAGCTATACGGGAGCTGAAAAAGGGAATGACAACAATGATAATCATAATTATAATAATGATAATGATAATAATGATAATGATAATAATGGGAAGGAAGTGGAAGCCTTTGAAGATTGCTTTGGAGACCTTGAAATTCTGCCGGAAGTTAGTGGGTTCAAATTCCCTATTCTAGACTATTTGAGAAACGACAGAATATGA ATGGACGACGACGACGACGACCACCGCCACCGCCGCCGCAACCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTCCCCTCTCTCCTCCTCCTCCTCCTCCTAAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCCTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTGCTCTCCTACGGCTTCCCCATTGGAAACGAGCCTATCAATCCCCTTTTGCCTAAAGACGATGGCCGAAGAGGCTTGGATGCTTGGACCACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGCTCGCCGGTAGCAGCGACCACCATTCCAAACGAATAACAGTAACTCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACCCCAAATAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGAGTGATAAGGAAGGAATGCAAATTTTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGGGATTTCGTTAAAGAAAATGGGCTGATGATGGGAGATTTAATTACCCTTTACGAGGATGATAGCAGGAACTTCTACGTGACGATTGATAAAGGGGAGAAGCATTTAAGCAGGGACGAAAATGAGGAGAAAAGGAAAGAGGCGGCGGCAGCAGCAGCAACAGCTTCAGCTTACCCAAACATGAACATTAAGGACGAAGAAGAGGATGACAATTTAGCTCTGTTGATCGAACAGCTCAAACACAGATCAGAAGACGACGAGCTCCCACAGTCACCTTGCGCCACTAGCCTCCTACTTTCACGTTCATACTTTGAGAGAGGGAGCTATACGGGAGCTGAAAAAGGGAATGACAACAATGATAATCATAATTATAATAATGATAATGATAATAATGATAATGATAATAATGGGAAGGAAGTGGAAGCCTTTGAAGATTGCTTTGGAGACCTTGAAATTCTGCCGGAAGTTAGTGGGTTCAAATTCCCTATTCTAGACTATTTGAGAAACGACAGAATATGA
BLAST of CmoCh07G002320 vs. Swiss-Prot
Match: LEC2_ARATH (B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana GN=LEC2 PE=2 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 4.5e-33 Identity = 110/282 (39.01%), Postives = 155/282 (54.96%), Query Frame = 1
BLAST of CmoCh07G002320 vs. Swiss-Prot
Match: ABI3_ARATH (B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.4e-26 Identity = 63/131 (48.09%), Postives = 91/131 (69.47%), Query Frame = 1
BLAST of CmoCh07G002320 vs. Swiss-Prot
Match: VIV1_MAIZE (Regulatory protein viviparous-1 OS=Zea mays GN=VP1 PE=2 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 2.7e-25 Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 1
BLAST of CmoCh07G002320 vs. Swiss-Prot
Match: IDEFH_ORYSJ (B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=2) HSP 1 Score: 116.3 bits (290), Expect = 7.7e-25 Identity = 59/128 (46.09%), Postives = 86/128 (67.19%), Query Frame = 1
BLAST of CmoCh07G002320 vs. Swiss-Prot
Match: VIV_ORYSJ (B3 domain-containing protein VP1 OS=Oryza sativa subsp. japonica GN=VP1 PE=1 SV=3) HSP 1 Score: 113.6 bits (283), Expect = 5.0e-24 Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TrEMBL
Match: A0A0A0KND0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517930 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 7.2e-54 Identity = 139/254 (54.72%), Postives = 169/254 (66.54%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TrEMBL
Match: V9P4F9_RICCO (Leafy cotyledon 2 OS=Ricinus communis GN=LEC2 PE=2 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 4.8e-50 Identity = 124/239 (51.88%), Postives = 160/239 (66.95%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TrEMBL
Match: B9RBC5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1674130 PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49 Identity = 128/253 (50.59%), Postives = 166/253 (65.61%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TrEMBL
Match: W9SN80_9ROSA (B3 domain-containing transcription factor LEC2 OS=Morus notabilis GN=L484_014493 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48 Identity = 150/374 (40.11%), Postives = 206/374 (55.08%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TrEMBL
Match: A0A067JLU7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21456 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 6.5e-47 Identity = 155/387 (40.05%), Postives = 216/387 (55.81%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TAIR10
Match: AT1G28300.1 (AT1G28300.1 AP2/B3-like transcriptional factor family protein) HSP 1 Score: 143.7 bits (361), Expect = 2.6e-34 Identity = 110/282 (39.01%), Postives = 155/282 (54.96%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TAIR10
Match: AT3G24650.1 (AT3G24650.1 AP2/B3-like transcriptional factor family protein) HSP 1 Score: 121.3 bits (303), Expect = 1.4e-27 Identity = 63/131 (48.09%), Postives = 91/131 (69.47%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TAIR10
Match: AT3G26790.1 (AT3G26790.1 AP2/B3-like transcriptional factor family protein) HSP 1 Score: 112.5 bits (280), Expect = 6.3e-25 Identity = 71/161 (44.10%), Postives = 92/161 (57.14%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TAIR10
Match: AT2G30470.1 (AT2G30470.1 high-level expression of sugar-inducible gene 2) HSP 1 Score: 75.1 bits (183), Expect = 1.1e-13 Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 1
BLAST of CmoCh07G002320 vs. TAIR10
Match: AT4G32010.1 (AT4G32010.1 HSI2-like 1) HSP 1 Score: 72.0 bits (175), Expect = 9.4e-13 Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
BLAST of CmoCh07G002320 vs. NCBI nr
Match: gi|778722568|ref|XP_011658520.1| (PREDICTED: B3 domain-containing transcription factor LEC2 [Cucumis sativus]) HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82 Identity = 207/423 (48.94%), Postives = 269/423 (63.59%), Query Frame = 1
BLAST of CmoCh07G002320 vs. NCBI nr
Match: gi|700194032|gb|KGN49236.1| (hypothetical protein Csa_6G517930 [Cucumis sativus]) HSP 1 Score: 219.5 bits (558), Expect = 1.0e-53 Identity = 139/254 (54.72%), Postives = 169/254 (66.54%), Query Frame = 1
BLAST of CmoCh07G002320 vs. NCBI nr
Match: gi|1021311953|ref|NP_001310615.1| (B3 domain-containing transcription factor LEC2 [Ricinus communis]) HSP 1 Score: 206.8 bits (525), Expect = 7.0e-50 Identity = 124/239 (51.88%), Postives = 160/239 (66.95%), Query Frame = 1
BLAST of CmoCh07G002320 vs. NCBI nr
Match: gi|223549358|gb|EEF50846.1| (hypothetical protein RCOM_1674130 [Ricinus communis]) HSP 1 Score: 204.9 bits (520), Expect = 2.6e-49 Identity = 128/253 (50.59%), Postives = 166/253 (65.61%), Query Frame = 1
BLAST of CmoCh07G002320 vs. NCBI nr
Match: gi|703144016|ref|XP_010108168.1| (B3 domain-containing transcription factor LEC2 [Morus notabilis]) HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48 Identity = 150/374 (40.11%), Postives = 206/374 (55.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |