CmoCh06G017440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G017440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Tubulin alpha-3 chain
Location	Cmo_Chr06 : 11963975 .. 11967140 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGAGACAAATAACAACTTCATTTCGTTTCATTCCAAATCCAATTCCCCTTTTACCCATCAATTGATTGATATTTATTCAATCAATTTCCCCCTCTGCGACTCGGCAGTCACAATCTGCGGCATCTTCCCCCTCTTCCCATTTCTCTCTCTGTTTTCTCTCGATCGTTCGCCCCTATTCGAGAGAGATCGGAAGCGGATTCGGGATGAGGGAAATCATCAGTCTTCACATTGGTCAAGCTGGGATTCAGGTCGGCAATTCTTGCTGGGAGCTTTACTGCCTTGAGCATGGCATCCAGCCTGATGGTTTGATGCCCAGGTTTGTATTTTCGATTTCTTGATTTGGGTTTCATTTTGAATGTCGATCGATATCAACCACGCATCACTTCTGATCCTCGATTACTTTTTTACTAGATAAATTCAATTTTCCCTGTAGTGATTCTCTATGGTAGGTGGGAGTGGGACTGAATTGAATTCGTGAATTTCGTTTACGTCTTTCTTTGGGTCTTTGAATTTTGGTGGCATTTTCCGGATCTGTTTATGCGTCAAGTTCTTGTGAGATCAGACGAGGAATCTGGACATGGGTTTAAATTTTAATTGGATGTATCTATATGGATCTCCTTTTCAAATCAGAGTAACAAGTCTGAGCTCGTAGGAATTGAAAATTCGCGTCGAGTTTAATCCAATTGATTTAGTTATCCTTTTCTCCGGGAATATCAAGTCGAATGGCCTAACTTTTGGGCTTTTTTATCCTCAGATTGTTTGCTGTAATGTCACTCTTAAGATGGGAATAGATGCCTCGATCCAATTCCTATATCTATTCAAGAAAATAAGTTCTTGGGATCTTCTCGGAGGTCATTTTGGTTGAAACAATATTTACTGAATTTTTGGATTGGATCTTTTGTTTATGTGGTGTCTTTGATAGTGGGTGGCATAAAAAGTCGTTGTTTTATTTATATACCCTTTCAAGGGCCAAGCATAATGACCCATCTCGATGAATTAGAACTCTTATTCTAATGATGTTTGATTACCTGCGTATGCTGCAGTGACACCTCGGTTGGTGTAGCACACGATGCTTTCAACACATTTTTCAGCGAGACTGGTTCGGGCAAGCACGTTCCTAGAGCTATATTTGTGGATCTCGAACCAACTGTTATTGATGAAGTGAGGACTGGGACATATAGACAGCTTTTCCACCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCCCGAGGACATTACACAGGTACATGTATTTCCATTTCGACAAGTTTTTCTAGAGTTTCCTTTTTCTATGTGGTCATTCATCACTAAACCTACTTTATTGTGTCATTTCCCAGTGGGTAGGGAAATAGTTGATCTGTGCCTTGACCGAGTTCGAAAACTAGCCGACAATTGTACTGGTTTGCAAGGGTTCTTAGTGTTTAATGCTGTTGGTGGTGGCACTGGATCTGGTTTGGGGTCGTTACTTCTGGAACGCTTGTCCGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTACACAAATGATAGACGCTTTGGTATCATAGACCACATATTTTTCATTGATGAAGCGTATATGCAAACCTTATATTTGTCACAATTTTTTCTCAGTGAAATTTTGTTTCTTGTCAGAAAAAAGATTCAAGAAAAGAAAAGAATCTGTTTCTGCTCAGTTGACAATATTTTTTATGCAAACCTTTAAATCTTTCTTACTGATCATCAAGATTCAAGTCTATTATTTAATGCTACAATATCTGTATGCAGGTATCCACTGCCGTGGTCGAACCATACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTGCTTCTGGACAACGAAGCCATTTATGATATCTGCAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGAGGTTTGATGGTGCTATCAACGTCGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATCTCTTCTGCAAAAGCTTACCATGAGCAGCTATCCGTTCCCGAAATCACCAATGCCGTATTTGATCCTTCAAGCATGATGGTCAAATGCGACCCAAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGAGAACAGTTCAATTTGTTGACTGGTGAGTTAATTGCTTAGGGTTGTTAGAATTATGAAACCAATGATATTTGTGTTTTCAAAGGGTCCATATCTTAATGCTGAAGTTGTTTAGAAGTATTGGAGGCAAATTTTGCAATCTCATCCTGAACTAAACTCCTAGAGGATCTTAGTTTGGTTGAGTTATTGAAATTTCTAAACGTTATTGATTTGAGTTAAACCTGTGGCATGGGAATTTTTCAGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGCGATCTTGCGAAGGTGCAGCGAGCTGTTTGTATGATAAGTAACAGCACAGCCGTGGCCGAGGTGTTTTCAAGAATCGACCACAAATTTGATCTGATGTATGCTAAGCGGGCATTTGTGCATTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAATTTTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGACTACGAGGAAGTTGGTGCGGAGGATGTGGATGAAGAGGAGGAAGGGGAAGATTATTAAACCAGGAGTGATAAATAGCTGGTGGTGTCCTTTTTCATCGTTTTCATGTTTCTTTGTTATCAAGTCCAAGCTGTGCAATGTTCCATACATGTTGAGGAGTGGTTTCTGTTTTTATGATTGATTTCAAAATTTACAGTGTTAGAACTACTTGCAAATTTTTTATTATAAGGAGTGAAGGTCTTCTTTCTAGGGGGCCCCCCATTAAAGCATTCCTTGGAAGGAATTGAGAAAATAATTAAGTTTTATATGGGTACCTCTTAAAACCAAGTAACAAAAACCAAAAAACTGTATCTAAATAAAATAAAAGGTCTTGTCTATTGCT

mRNA sequence

TAAGGAGACAAATAACAACTTCATTTCGTTTCATTCCAAATCCAATTCCCCTTTTACCCATCAATTGATTGATATTTATTCAATCAATTTCCCCCTCTGCGACTCGGCAGTCACAATCTGCGGCATCTTCCCCCTCTTCCCATTTCTCTCTCTGTTTTCTCTCGATCGTTCGCCCCTATTCGAGAGAGATCGGAAGCGGATTCGGGATGAGGGAAATCATCAGTCTTCACATTGGTCAAGCTGGGATTCAGGTCGGCAATTCTTGCTGGGAGCTTTACTGCCTTGAGCATGGCATCCAGCCTGATGGTTTGATGCCCAGTGACACCTCGGTTGGTGTAGCACACGATGCTTTCAACACATTTTTCAGCGAGACTGGTTCGGGCAAGCACGTTCCTAGAGCTATATTTGTGGATCTCGAACCAACTGTTATTGATGAAGTGAGGACTGGGACATATAGACAGCTTTTCCACCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCCCGAGGACATTACACAGAGTTTCCTTTTTCTATGTGGTCATTCATCACTAAACCTACTTTATTGTGTCATTTCCCAGTGGGTAGGGAAATAGTTGATCTGTGCCTTGACCGAGTTCGAAAACTAGCCGACAATTGTACTGGTTTGCAAGGGTTCTTAGTGTTTAATGCTGTTGGTGGTGGCACTGGATCTGGTTTGGGGTCGTTACTTCTGGAACGCTTGTCCGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGCGTATATGCAAACCTTATATTTGTCACAATTTTTTCTCAGTGAAATTTTGTTTCTTGTCAGAAAAAAGATTCAAGAAAAGAAAAGAATCTGTTTCTGCTCAGTTGACAATATTTTTTATGCAAACCTTTAAATCTTTCTTACTGATCATCAAGATTCAAGTATCCACTGCCGTGGTCGAACCATACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTGCTTCTGGACAACGAAGCCATTTATGATATCTGCAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGAGGTTTGATGGTGCTATCAACGTCGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATCTCTTCTGCAAAAGCTTACCATGAGCAGCTATCCGTTCCCGAAATCACCAATGCCGTATTTGATCCTTCAAGCATGATGGTCAAATGCGACCCAAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGAGAACAGTTCAATTTGTTGACTGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGCGATCTTGCGAAGGTGCAGCGAGCTGTTTGTATGATAAGTAACAGCACAGCCGTGGCCGAGGTGTTTTCAAGAATCGACCACAAATTTGATCTGATGTATGCTAAGCGGGCATTTGTGCATTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAATTTTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGACTACGAGGAAGTTGGTGCGGAGGATGTGGATGAAGAGGAGGAAGGGGAAGATTATTAAACCAGGAGTGATAAATAGCTGGTGGTGTCCTTTTTCATCGTTTTCATGTTTCTTTGTTATCAAGTCCAAGCTGTGCAATGTTCCATACATGTTGAGGAGTGGTTTCTGTTTTTATGATTGATTTCAAAATTTACAGTGTTAGAACTACTTGCAAATTTTTTATTATAAGGAGTGAAGGTCTTCTTTCTAGGGGGCCCCCCATTAAAGCATTCCTTGGAAGGAATTGAGAAAATAATTAAGTTTTATATGGGTACCTCTTAAAACCAAGTAACAAAAACCAAAAAACTGTATCTAAATAAAATAAAAGGTCTTGTCTATTGCT

Coding sequence (CDS)

ATGAGGGAAATCATCAGTCTTCACATTGGTCAAGCTGGGATTCAGGTCGGCAATTCTTGCTGGGAGCTTTACTGCCTTGAGCATGGCATCCAGCCTGATGGTTTGATGCCCAGTGACACCTCGGTTGGTGTAGCACACGATGCTTTCAACACATTTTTCAGCGAGACTGGTTCGGGCAAGCACGTTCCTAGAGCTATATTTGTGGATCTCGAACCAACTGTTATTGATGAAGTGAGGACTGGGACATATAGACAGCTTTTCCACCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCCCGAGGACATTACACAGAGTTTCCTTTTTCTATGTGGTCATTCATCACTAAACCTACTTTATTGTGTCATTTCCCAGTGGGTAGGGAAATAGTTGATCTGTGCCTTGACCGAGTTCGAAAACTAGCCGACAATTGTACTGGTTTGCAAGGGTTCTTAGTGTTTAATGCTGTTGGTGGTGGCACTGGATCTGGTTTGGGGTCGTTACTTCTGGAACGCTTGTCCGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGCGTATATGCAAACCTTATATTTGTCACAATTTTTTCTCAGTGAAATTTTGTTTCTTGTCAGAAAAAAGATTCAAGAAAAGAAAAGAATCTGTTTCTGCTCAGTTGACAATATTTTTTATGCAAACCTTTAAATCTTTCTTACTGATCATCAAGATTCAAGTATCCACTGCCGTGGTCGAACCATACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTGCTTCTGGACAACGAAGCCATTTATGATATCTGCAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGAGGTTTGATGGTGCTATCAACGTCGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATCTCTTCTGCAAAAGCTTACCATGAGCAGCTATCCGTTCCCGAAATCACCAATGCCGTATTTGATCCTTCAAGCATGATGGTCAAATGCGACCCAAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGAGAACAGTTCAATTTGTTGACTGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGCGATCTTGCGAAGGTGCAGCGAGCTGTTTGTATGATAAGTAACAGCACAGCCGTGGCCGAGGTGTTTTCAAGAATCGACCACAAATTTGATCTGATGTATGCTAAGCGGGCATTTGTGCATTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAATTTTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGACTACGAGGAAGTTGGTGCGGAGGATGTGGATGAAGAGGAGGAAGGGGAAGATTATTAA

Homology

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BLAST of CmoCh06G017440 vs. Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 8.4e-149
Identity = 263/275 (95.64%), Postives = 270/275 (98.18%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAV
Sbjct: 236 SSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+PSSMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI
Sbjct: 296 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE  D+E +EGEDY
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGADDEGDEGEDY 450

[Close]

BLAST of CmoCh06G017440 vs. Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.9e-148
Identity = 262/275 (95.27%), Postives = 270/275 (98.18%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAV
Sbjct: 236 SSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+PSSMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI
Sbjct: 296 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE  D+E +EG+DY
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450

[Close]

BLAST of CmoCh06G017440 vs. Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.9e-148
Identity = 262/275 (95.27%), Postives = 270/275 (98.18%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAV
Sbjct: 236 SSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+PSSMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI
Sbjct: 296 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE  D+E ++GEDY
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGADDENDDGEDY 450

[Close]

BLAST of CmoCh06G017440 vs. Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.9e-148
Identity = 262/275 (95.27%), Postives = 270/275 (98.18%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAV
Sbjct: 236 SSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+PSSMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI
Sbjct: 296 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE  D+E +EG+DY
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450

[Close]

BLAST of CmoCh06G017440 vs. Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.9e-148
Identity = 262/275 (95.27%), Postives = 270/275 (98.18%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAV
Sbjct: 236 SSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+PSSMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI
Sbjct: 296 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE  D+E +EG+DY
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450

[Close]

BLAST of CmoCh06G017440 vs. TrEMBL
Match: A0A059DA30_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03604 PE=3 SV=1)

HSP 1 Score: 786.6 bits (2030), Expect = 1.9e-224
Identity = 407/522 (77.97%), Postives = 432/522 (82.76%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGNSCWELYCLEHGIQPDG++PSD +VGVA DAFNTFFSETGSGK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMLPSDATVGVAADAFNTFFSETGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSMWSFIT 120
           HVPRAIF+DLEPTVIDEVR+GTYRQLFHPEQLISGKEDAANNFARGHYT           
Sbjct: 61  HVPRAIFLDLEPTVIDEVRSGTYRQLFHPEQLISGKEDAANNFARGHYT----------- 120

Query: 121 KPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 180
                    VG+EIVDLCLDRVRKLADNCTGLQGFLVF+AVGGGTGSGLGSLLLERLSVD
Sbjct: 121 ---------VGKEIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 180

Query: 181 YGKKSKLGFSIYPSPQRICKPYICHNFFSVKFCFLSEKRFKKRKESVSAQLTIFFMQTFK 240
           YGKKSKLGF+IYPSPQ +             FC L              Q++   ++ + 
Sbjct: 181 YGKKSKLGFTIYPSPQAVS-----------NFCHL--------------QVSTAVVEPYN 240

Query: 241 SFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 300
           S L    +   T V     +VL  +               AIYDICRRSLDIERPTYTNL
Sbjct: 241 SVLSTHSLLEHTDV-----AVLLDNE--------------AIYDICRRSLDIERPTYTNL 300

Query: 301 NRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLS 360
           NRLISQ+ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLS
Sbjct: 301 NRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLS 360

Query: 361 VPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWC 420
           VPEITNAVF+PSSMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWC
Sbjct: 361 VPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWC 420

Query: 421 PTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHW 480
           PTGFKCGINY+PP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHW
Sbjct: 421 PTGFKCGINYEPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHW 458

Query: 481 YVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 523
           YVGEGMEEGEFSEAREDLAALEKDYEEVGAE VD+EEEGEDY
Sbjct: 481 YVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDEEEGEDY 458

[Close]

BLAST of CmoCh06G017440 vs. TrEMBL
Match: X6MF88_RETFI (Uncharacterized protein OS=Reticulomyxa filosa GN=RFI_24821 PE=3 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 5.8e-205
Identity = 379/543 (69.80%), Postives = 428/543 (78.82%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+H+GQAGIQVGN+CWELYCLEHGIQPDG +PS+ S+G   DAFNTFFSETGSGK
Sbjct: 1   MREIISIHVGQAGIQVGNACWELYCLEHGIQPDGTVPSEKSIGGGDDAFNTFFSETGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFH--------------PEQLISGKEDAANNFARG 120
           HVPR +F+DLEP+VIDEVR+GTY+QLF               P+QLISGKEDAANN+ARG
Sbjct: 61  HVPRCVFLDLEPSVIDEVRSGTYKQLFQLSNQKDERTRSYFIPQQLISGKEDAANNYARG 120

Query: 121 HYTEFPFSMWSFITKPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTG 180
           HYT                    +G+EIVDLCLDR+RKLADNCTGLQGFL FN+VGGGTG
Sbjct: 121 HYT--------------------IGKEIVDLCLDRIRKLADNCTGLQGFLFFNSVGGGTG 180

Query: 181 SGLGSLLLERLSVDYGKKSKLGFSIYPSPQRICKPYIC-----HNFFSVKFCFLSEKRFK 240
           SG+                 L F ++P    I K ++      HN    KF    +K+ K
Sbjct: 181 SGV-----------------LFFFLHPY-LIIIKDFVLFLKKKHND---KFLICLQKQ-K 240

Query: 241 KRKESVSAQLTIFFMQTFK-SFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE 300
                +  +L++ + +  K  F +    QVSTAVVEPYNSVLSTHSLLEHTDVAV+LDNE
Sbjct: 241 GLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNE 300

Query: 301 AIYDICRRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHF 360
           AIYDI RR LDIERPTYTNLNRLI+QVISSLT SLRFDGA+NVD+TEFQTNLVPYPRIHF
Sbjct: 301 AIYDISRRLLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHF 360

Query: 361 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 420
           MLSSY+PVIS+ KAYHEQL+V EIT++ F+PSSMM KCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 361 MLSSYSPVISAEKAYHEQLNVAEITSSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKD 420

Query: 421 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 480
           VNAAV +IKTKRT+QFVDWCPTGFK GINYQPP+VVPGGDLAKVQRAVCMI+NSTA+AEV
Sbjct: 421 VNAAVGSIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEV 480

Query: 481 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVD---EEE 521
           FSRIDHKFD+MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE +    EE+
Sbjct: 481 FSRIDHKFDIMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESLQNGVEED 501

[Close]

BLAST of CmoCh06G017440 vs. TrEMBL
Match: A0A0P6C711_9CRUS (Tubulin alpha-1 chain OS=Daphnia magna PE=3 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 2.9e-204
Identity = 358/527 (67.93%), Postives = 414/527 (78.56%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D ++G   D+FNTFFSE GSGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGRMPTDKTIGGNDDSFNTFFSECGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSMWSFIT 120
           HVPRAIFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT           
Sbjct: 61  HVPRAIFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT----------- 120

Query: 121 KPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 180
                    +G+EIVDL LDRVRKL+D C+GLQGFL+F++ GGGTGSG  SLL+ERLSVD
Sbjct: 121 ---------IGKEIVDLVLDRVRKLSDQCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVD 180

Query: 181 YGKKSKLGFSIYPSPQRICKPYICHN------FFSVKFCFLSEKRFKKRKESVSAQLTIF 240
           +GKK                            F S+    LS    KK K          
Sbjct: 181 FGKKXXXXXXXXXXXXXXXXXXXSFGGGTGSGFTSLLMERLSVDFGKKSK---------- 240

Query: 241 FMQTFKSFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER 300
                  F +    QVSTAVVEPYNS+L+TH+ LEH+D A ++DNEA YDICRR+LDIER
Sbjct: 241 -----LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEATYDICRRNLDIER 300

Query: 301 PTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKA 360
           P+YTNLNRLI Q++SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KA
Sbjct: 301 PSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 360

Query: 361 YHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTV 420
           YHEQL+V EIT + F+P++ MVKCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKR++
Sbjct: 361 YHEQLTVGEITTSCFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSI 420

Query: 421 QFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAK 480
           QFVDWCPTGFK GINYQPP+VVPGGDLAKV RAVCM+SN+TA+AE ++R+DHKFDLMYAK
Sbjct: 421 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAK 480

Query: 481 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGED 522
           RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + VD E EG D
Sbjct: 481 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVDGEGEGND 492

[Close]

BLAST of CmoCh06G017440 vs. TrEMBL
Match: A0A0N7ZIJ7_9CRUS (Tubulin alpha-1 chain OS=Daphnia magna PE=3 SV=1)

HSP 1 Score: 709.1 bits (1829), Expect = 3.9e-201
Identity = 355/525 (67.62%), Postives = 418/525 (79.62%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETGSGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSMWSFIT 120
           HVPRA+FVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT           
Sbjct: 61  HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT----------- 120

Query: 121 KPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 180
                    +G+EIVDL LDR+RKL+D CTGLQGFL+F++ GGGTGSG  SLL+ERLSVD
Sbjct: 121 ---------IGKEIVDLVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVD 180

Query: 181 YGKKSKLGFSIYPSPQ---RICKPYICHNFFSVKFCFL-SEKRFKKRKESVSAQLTIFFM 240
           YGKKSKL F+IYP+PQ    + +PY  ++  +       S+  F    E+      I+++
Sbjct: 181 YGKKSKLEFAIYPAPQVSTAVVEPY--NSILTTPTTLENSDCAFMVDNEA------IYYI 240

Query: 241 QTFKSFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPT 300
                  L IK    T +      + S+ +     D A +++NE IYDICRRSLDI RPT
Sbjct: 241 CRRN---LDIKRPTYTNLNPLIGQIASSITASLRFDCAFMVNNEVIYDICRRSLDIARPT 300

Query: 301 YTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYH 360
           YTNLN LI Q++SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYH
Sbjct: 301 YTNLNPLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 360

Query: 361 EQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQF 420
           EQL+V EITNA F+P++ MVKCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRT+QF
Sbjct: 361 EQLTVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 420

Query: 421 VDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRA 480
           VDWCPTGFK GINYQPP+VVPGGDLAKV RAVCM+SN+TA+AE ++R+DHKFDLMYAKRA
Sbjct: 421 VDWCPTGFKVGINYQPPTVVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRA 480

Query: 481 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGED 522
           FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + V+ E EG D
Sbjct: 481 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGND 494

[Close]

BLAST of CmoCh06G017440 vs. TrEMBL
Match: A0A0P5TLK1_9CRUS (Tubulin alpha-1 chain OS=Daphnia magna PE=3 SV=1)

HSP 1 Score: 680.6 bits (1755), Expect = 1.5e-192
Identity = 336/532 (63.16%), Postives = 408/532 (76.69%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLM----PSDTSVGV-AHDAFNTFFSE 60
           MRE+IS+H+GQAG+Q+GNSCWELYCLEHGI+PDG++    P   S G  +   F TFFSE
Sbjct: 1   MREVISIHVGQAGVQMGNSCWELYCLEHGIRPDGILSETRPPQASGGSNSPSTFGTFFSE 60

Query: 61  TGSGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSM 120
           T S K VPRA+FVDLEP+V+D VRTGTYRQLFHP+QLI+GKEDAANN+ARGHYT      
Sbjct: 61  TASNKQVPRALFVDLEPSVVDTVRTGTYRQLFHPDQLITGKEDAANNYARGHYT------ 120

Query: 121 WSFITKPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLE 180
                         VGREI D+  DR+R+L +NC GLQGFLVF++ GGG+GSG  SLL+E
Sbjct: 121 --------------VGREIADVVSDRIRRLVENCVGLQGFLVFHSFGGGSGSGFTSLLME 180

Query: 181 RLSVDYGKKSKLGFSIYPSPQ---RICKPYICHNFFSVKFCFLSEKRFKKRKESVSAQLT 240
           RLSVDYGKKSKL F +YP+PQ    + +PY                      +    Q  
Sbjct: 181 RLSVDYGKKSKLQFCVYPAPQVSTAVVEPYNSXXXXXXXXXXXXXXXXXXXGKKSKLQFC 240

Query: 241 IFFMQTFKSFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI 300
           ++              QVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+L I
Sbjct: 241 VYPAP-----------QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLSI 300

Query: 301 ERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSA 360
           ERPTYTNLNRLI Q++SS+T SLRF+GA+NVD+TEFQTNLVPYPRIHF L +YAP++S+ 
Sbjct: 301 ERPTYTNLNRLIGQIVSSITASLRFEGALNVDLTEFQTNLVPYPRIHFPLVTYAPMLSAE 360

Query: 361 KAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKR 420
           KAYHEQLSV EIT+A F+P++ MVKCDPR GKYMA CL+YRGDVVPKDVN A+A++K+KR
Sbjct: 361 KAYHEQLSVAEITSACFEPNNQMVKCDPRKGKYMAVCLLYRGDVVPKDVNGAIASMKSKR 420

Query: 421 TVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMY 480
           T+QFVDWCPTGFK GINYQ P++VPGGDLA +QR+VCMISN+TA+ E + R++HKFDL+Y
Sbjct: 421 TIQFVDWCPTGFKVGINYQAPTIVPGGDLAAMQRSVCMISNTTAIVEAWGRLNHKFDLLY 480

Query: 481 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEE--GEDY 523
            KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV  ED+ + +   G++Y
Sbjct: 481 TKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVAMEDMSDSDGVIGDEY 501

[Close]

BLAST of CmoCh06G017440 vs. TAIR10
Match: AT5G19770.1 (AT5G19770.1 tubulin alpha-3)

HSP 1 Score: 526.9 bits (1356), Expect = 1.4e-149
Identity = 263/275 (95.64%), Postives = 270/275 (98.18%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+AKAYHEQLSVPEITNAV
Sbjct: 236 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+P+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGI
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of CmoCh06G017440 vs. TAIR10
Match: AT5G19780.1 (AT5G19780.1 tubulin alpha-5)

HSP 1 Score: 526.9 bits (1356), Expect = 1.4e-149
Identity = 263/275 (95.64%), Postives = 270/275 (98.18%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+AKAYHEQLSVPEITNAV
Sbjct: 236 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+P+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGI
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of CmoCh06G017440 vs. TAIR10
Match: AT1G64740.1 (AT1G64740.1 alpha-1 tubulin)

HSP 1 Score: 510.4 bits (1313), Expect = 1.3e-144
Identity = 252/275 (91.64%), Postives = 263/275 (95.64%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVSTAVVEPYNSVLSTHSLLEHTDV VLLDNEAIYDICRRSLDIERPTY+NLNRLISQ I
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTI 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQ SVPEIT +V
Sbjct: 236 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSV 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+PS+MM KCDPRHGKYMACCLMYRGDVVPKDVN AVA IK KRT+QFVDWCPTGFKCGI
Sbjct: 296 FEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEE
Sbjct: 356 NYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAEDV-DEEEEGEDY 523
           GEFSEAREDLAALEKDYEEVG E   D++EEG++Y
Sbjct: 416 GEFSEAREDLAALEKDYEEVGGEGAEDDDEEGDEY 450

[Close]

BLAST of CmoCh06G017440 vs. TAIR10
Match: AT4G14960.2 (AT4G14960.2 Tubulin/FtsZ family protein)

HSP 1 Score: 506.9 bits (1304), Expect = 1.5e-143
Identity = 248/275 (90.18%), Postives = 266/275 (96.73%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVST+VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL+IERPTYTNLNRL+SQVI
Sbjct: 176 QVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVI 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLT SLRFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KA+HEQLSV EITN+ 
Sbjct: 236 SSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSA 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+P+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGI
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE   DE++EGE+Y
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450

[Close]

BLAST of CmoCh06G017440 vs. TAIR10
Match: AT1G50010.1 (AT1G50010.1 tubulin alpha-2 chain)

HSP 1 Score: 506.5 bits (1303), Expect = 1.9e-143
Identity = 248/275 (90.18%), Postives = 265/275 (96.36%), Query Frame = 1


Query: 249 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVI 308
           QVST+VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL IERPTYTNLNRL+SQVI
Sbjct: 176 QVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVI 235

Query: 309 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAV 368
           SSLT SLRFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KA+HEQLSV EITN+ 
Sbjct: 236 SSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSA 295

Query: 369 FDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGI 428
           F+P+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGI
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGI 355

Query: 429 NYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 488
           NYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 489 GEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 523
           GEFSEAREDLAALEKDYEEVGAE   DE++EGE+Y
Sbjct: 416 GEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450

[Close]

BLAST of CmoCh06G017440 vs. NCBI nr
Match: gi|629122575|gb|KCW87065.1| (hypothetical protein EUGRSUZ_B03604 [Eucalyptus grandis])

HSP 1 Score: 786.6 bits (2030), Expect = 2.7e-224
Identity = 407/522 (77.97%), Postives = 432/522 (82.76%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGNSCWELYCLEHGIQPDG++PSD +VGVA DAFNTFFSETGSGK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMLPSDATVGVAADAFNTFFSETGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSMWSFIT 120
           HVPRAIF+DLEPTVIDEVR+GTYRQLFHPEQLISGKEDAANNFARGHYT           
Sbjct: 61  HVPRAIFLDLEPTVIDEVRSGTYRQLFHPEQLISGKEDAANNFARGHYT----------- 120

Query: 121 KPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 180
                    VG+EIVDLCLDRVRKLADNCTGLQGFLVF+AVGGGTGSGLGSLLLERLSVD
Sbjct: 121 ---------VGKEIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD 180

Query: 181 YGKKSKLGFSIYPSPQRICKPYICHNFFSVKFCFLSEKRFKKRKESVSAQLTIFFMQTFK 240
           YGKKSKLGF+IYPSPQ +             FC L              Q++   ++ + 
Sbjct: 181 YGKKSKLGFTIYPSPQAVS-----------NFCHL--------------QVSTAVVEPYN 240

Query: 241 SFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 300
           S L    +   T V     +VL  +               AIYDICRRSLDIERPTYTNL
Sbjct: 241 SVLSTHSLLEHTDV-----AVLLDNE--------------AIYDICRRSLDIERPTYTNL 300

Query: 301 NRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLS 360
           NRLISQ+ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLS
Sbjct: 301 NRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLS 360

Query: 361 VPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWC 420
           VPEITNAVF+PSSMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWC
Sbjct: 361 VPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWC 420

Query: 421 PTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHW 480
           PTGFKCGINY+PP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHW
Sbjct: 421 PTGFKCGINYEPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHW 458

Query: 481 YVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 523
           YVGEGMEEGEFSEAREDLAALEKDYEEVGAE VD+EEEGEDY
Sbjct: 481 YVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDEEEGEDY 458

[Close]

BLAST of CmoCh06G017440 vs. NCBI nr
Match: gi|569374528|gb|ETO12554.1| (hypothetical protein RFI_24821 [Reticulomyxa filosa])

HSP 1 Score: 721.8 bits (1862), Expect = 8.3e-205
Identity = 379/543 (69.80%), Postives = 428/543 (78.82%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+H+GQAGIQVGN+CWELYCLEHGIQPDG +PS+ S+G   DAFNTFFSETGSGK
Sbjct: 1   MREIISIHVGQAGIQVGNACWELYCLEHGIQPDGTVPSEKSIGGGDDAFNTFFSETGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFH--------------PEQLISGKEDAANNFARG 120
           HVPR +F+DLEP+VIDEVR+GTY+QLF               P+QLISGKEDAANN+ARG
Sbjct: 61  HVPRCVFLDLEPSVIDEVRSGTYKQLFQLSNQKDERTRSYFIPQQLISGKEDAANNYARG 120

Query: 121 HYTEFPFSMWSFITKPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTG 180
           HYT                    +G+EIVDLCLDR+RKLADNCTGLQGFL FN+VGGGTG
Sbjct: 121 HYT--------------------IGKEIVDLCLDRIRKLADNCTGLQGFLFFNSVGGGTG 180

Query: 181 SGLGSLLLERLSVDYGKKSKLGFSIYPSPQRICKPYIC-----HNFFSVKFCFLSEKRFK 240
           SG+                 L F ++P    I K ++      HN    KF    +K+ K
Sbjct: 181 SGV-----------------LFFFLHPY-LIIIKDFVLFLKKKHND---KFLICLQKQ-K 240

Query: 241 KRKESVSAQLTIFFMQTFK-SFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE 300
                +  +L++ + +  K  F +    QVSTAVVEPYNSVLSTHSLLEHTDVAV+LDNE
Sbjct: 241 GLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNE 300

Query: 301 AIYDICRRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHF 360
           AIYDI RR LDIERPTYTNLNRLI+QVISSLT SLRFDGA+NVD+TEFQTNLVPYPRIHF
Sbjct: 301 AIYDISRRLLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHF 360

Query: 361 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 420
           MLSSY+PVIS+ KAYHEQL+V EIT++ F+PSSMM KCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 361 MLSSYSPVISAEKAYHEQLNVAEITSSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKD 420

Query: 421 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 480
           VNAAV +IKTKRT+QFVDWCPTGFK GINYQPP+VVPGGDLAKVQRAVCMI+NSTA+AEV
Sbjct: 421 VNAAVGSIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEV 480

Query: 481 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVD---EEE 521
           FSRIDHKFD+MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE +    EE+
Sbjct: 481 FSRIDHKFDIMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESLQNGVEED 501

[Close]

BLAST of CmoCh06G017440 vs. NCBI nr
Match: gi|742077560|ref|XP_010833067.1| (PREDICTED: tubulin alpha-3 chain-like [Bison bison bison])

HSP 1 Score: 672.5 bits (1734), Expect = 5.8e-190
Identity = 347/526 (65.97%), Postives = 404/526 (76.81%), Query Frame = 1


Query: 2   REIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGKH 61
           RE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+GKH
Sbjct: 32  RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 91

Query: 62  VPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSMWSFITK 121
           VPRA+FVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT            
Sbjct: 92  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT------------ 151

Query: 122 PTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 181
                   +G+EIVDL LDR+RKL               V G  GS  G     RLS   
Sbjct: 152 --------IGKEIVDLVLDRIRKL---------------VRGPGGSRQGGQA--RLSAAR 211

Query: 182 GKKSKLGFSIYPSPQRICKPYICHNF---FSVKFCFLSEKRFKKRKESVSAQLTIFFMQT 241
              S+L          +    I H+F       F  L  +R           L++ + + 
Sbjct: 212 AAGSRLSLPQADLCTGLQGFLIFHSFGGGTGSGFASLLMER-----------LSVDYGKK 271

Query: 242 FK-SFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTY 301
            K  F +    QVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTY
Sbjct: 272 SKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY 331

Query: 302 TNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHE 361
           TNLNRLI Q++SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVIS+ KAYHE
Sbjct: 332 TNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHE 391

Query: 362 QLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFV 421
           QLSV EITNA F+P++ MVKCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRT+QFV
Sbjct: 392 QLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFV 451

Query: 422 DWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAF 481
           DWCPTGFK GINYQPP+VVPGGDLAKVQRAVCM+SN+TA+AE ++R+DHKFDLMYAKRAF
Sbjct: 452 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 509

Query: 482 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVD-EEEEGEDY 523
           VHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + V+ E EEGE+Y
Sbjct: 512 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEAEAEEGEEY 509

[Close]

BLAST of CmoCh06G017440 vs. NCBI nr
Match: gi|1016161839|gb|KZC09001.1| (Tubulin alpha chain, partial [Dufourea novaeangliae])

HSP 1 Score: 643.7 bits (1659), Expect = 2.9e-181
Identity = 320/527 (60.72%), Postives = 401/527 (76.09%), Query Frame = 1


Query: 2   REIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGKH 61
           RE +S+HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSDTSVG   D+FNTFFSETGSGKH
Sbjct: 1   RECVSIHIGQAGVQMGNACWELYCLEHGIQPDGRMPSDTSVGYGEDSFNTFFSETGSGKH 60

Query: 62  VPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSMWSFITK 121
           VPRA+FVDLEPTV+DEVR GTY+QLFHPEQLI+GKEDAANN+ARGHYT            
Sbjct: 61  VPRAVFVDLEPTVVDEVRAGTYKQLFHPEQLITGKEDAANNYARGHYT------------ 120

Query: 122 PTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 181
                   +G+EIVDL LDR+R+L + C GLQGFL+F++ GGGTGSG  SLL+ERLS +Y
Sbjct: 121 --------IGKEIVDLTLDRIRRLTERCRGLQGFLIFHSFGGGTGSGFSSLLMERLSAEY 180

Query: 182 GKKSKLGFSIYPSPQ---RICKPY--ICHNFFSVKFC---FLSEKRFKKRKESVSAQLTI 241
            KKSKL FSIYP+PQ    + +PY  I +   +++ C   F+ + +  +  +SVS     
Sbjct: 181 PKKSKLTFSIYPAPQVSTAVVEPYNAILYTHPTLEHCEVAFIVDNQV-RTNDSVSV---- 240

Query: 242 FFMQTFKSFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE 301
                         I +S      Y       S++    + +   ++AIY++CRR+L+I+
Sbjct: 241 --------------IPMSEPPKPEYGR-YKNDSVVLGPLIRIDRVSQAIYELCRRNLNID 300

Query: 302 RPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAK 361
           RPTYTNLNRLI Q++SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L++YAPV+S+ K
Sbjct: 301 RPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVMSAEK 360

Query: 362 AYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT 421
           A HE+++V +ITN+ F+P+  MV CDPR GKYMA C++YRGDVVPKDVNAA+A IK ++ 
Sbjct: 361 AGHERITVADITNSCFEPNHQMVNCDPRRGKYMAVCMLYRGDVVPKDVNAAIAMIKRQKH 420

Query: 422 VQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 481
           VQFV+WCPTGFK GINYQPP+VVPGGDLA+V+RAVC + N+TA+ + ++RIDHKFDLMYA
Sbjct: 421 VQFVEWCPTGFKVGINYQPPTVVPGGDLARVERAVCCLCNTTAIVDAWARIDHKFDLMYA 480

Query: 482 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 521
           KRAFVHW+VGEGMEEGEF+EAREDLAALE DY EV  +  + E+E E
Sbjct: 481 KRAFVHWFVGEGMEEGEFTEAREDLAALELDYREVQEDAANTEDEEE 487

[Close]

BLAST of CmoCh06G017440 vs. NCBI nr
Match: gi|829088111|ref|XP_012650470.1| (uncharacterized protein [Babesia microti strain RI])

HSP 1 Score: 622.9 bits (1605), Expect = 5.2e-175
Identity = 321/511 (62.82%), Postives = 382/511 (74.76%), Query Frame = 1


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+H+GQAGIQ+GNSCWEL+CLEH IQPDG + S        D+F TFFSET SGK
Sbjct: 1   MREIISIHVGQAGIQLGNSCWELFCLEHEIQPDGHINSSNITTYNDDSFTTFFSETNSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTEFPFSMWSFIT 120
           HVPR+IFVDLEPTV+DE++ G Y++LFHPEQ+ISG EDAANNFARG YT           
Sbjct: 61  HVPRSIFVDLEPTVLDEIKCGNYQKLFHPEQMISGTEDAANNFARGRYT----------- 120

Query: 121 KPTLLCHFPVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 180
                    VG+++ ++C++++RKLA+N                  SGL   L+   +V 
Sbjct: 121 ---------VGKDMAEICVEKIRKLAEN-----------------CSGLQGFLMFN-AVG 180

Query: 181 YGKKSKLGFSIYPSPQRICKPYICHNFFSVKFCFLSEKRFKKRKESVSAQLTIFFMQTFK 240
            G  S LG                        C L E+        +SA+   +  ++  
Sbjct: 181 GGTGSGLG------------------------CLLLER--------LSAE---YGKKSKL 240

Query: 241 SFLLIIKIQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 300
           +F      +VST VVEPYN+VLSTHSLLEHTDV V+LDNEAIYDIC  +L+IERP YTNL
Sbjct: 241 NFCCWPSPRVSTTVVEPYNAVLSTHSLLEHTDVTVMLDNEAIYDICTHNLNIERPNYTNL 300

Query: 301 NRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLS 360
           NRLI+QVISSLT SLRF+GA+NVDITEFQTNLVPYPRIHFMLSSYAPVIS+ +A+HEQLS
Sbjct: 301 NRLIAQVISSLTASLRFEGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAERAFHEQLS 360

Query: 361 VPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWC 420
           V EITN  F+P++MMVKCDPR+GKYMACCLMYRGDVVPKDVNAAVATIKT+++++FVDWC
Sbjct: 361 VAEITNWAFEPNNMMVKCDPRNGKYMACCLMYRGDVVPKDVNAAVATIKTRKSIKFVDWC 420

Query: 421 PTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHW 480
           PTGFKCGINYQPP+VVPGG+LAKV RAVCMISNSTA++EVFSR++ KFDLMY+KRAFVHW
Sbjct: 421 PTGFKCGINYQPPTVVPGGNLAKVMRAVCMISNSTAISEVFSRMNKKFDLMYSKRAFVHW 438

Query: 481 YVGEGMEEGEFSEAREDLAALEKDYEEVGAE 512
           YVGEGMEEGEF+EAREDLA LE DYEEVG +
Sbjct: 481 YVGEGMEEGEFNEAREDLATLENDYEEVGLD 438

The following BLAST results are available for this feature:

BLAST of CmoCh06G017440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBA3_ELEIN	8.4e-149	95.64	Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1	[more]
TBA6_MAIZE	1.9e-148	95.27	Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1	[more]
TBA1_ORYSJ	1.9e-148	95.27	Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1	[more]
TBA5_MAIZE	1.9e-148	95.27	Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1	[more]
TBA1_HORVU	1.9e-148	95.27	Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1	[more]

BLAST of CmoCh06G017440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059DA30_EUCGR	1.9e-224	77.97	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03604 PE=3 SV=1	[more]
X6MF88_RETFI	5.8e-205	69.80	Uncharacterized protein OS=Reticulomyxa filosa GN=RFI_24821 PE=3 SV=1	[more]
A0A0P6C711_9CRUS	2.9e-204	67.93	Tubulin alpha-1 chain OS=Daphnia magna PE=3 SV=1	[more]
A0A0N7ZIJ7_9CRUS	3.9e-201	67.62	Tubulin alpha-1 chain OS=Daphnia magna PE=3 SV=1	[more]
A0A0P5TLK1_9CRUS	1.5e-192	63.16	Tubulin alpha-1 chain OS=Daphnia magna PE=3 SV=1	[more]

BLAST of CmoCh06G017440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19770.1	1.4e-149	95.64	tubulin alpha-3	[more]
AT5G19780.1	1.4e-149	95.64	tubulin alpha-5	[more]
AT1G64740.1	1.3e-144	91.64	alpha-1 tubulin	[more]
AT4G14960.2	1.5e-143	90.18	Tubulin/FtsZ family protein	[more]
AT1G50010.1	1.9e-143	90.18	tubulin alpha-2 chain	[more]

BLAST of CmoCh06G017440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629122575\|gb\|KCW87065.1\|	2.7e-224	77.97	hypothetical protein EUGRSUZ_B03604 [Eucalyptus grandis]	[more]
gi\|569374528\|gb\|ETO12554.1\|	8.3e-205	69.80	hypothetical protein RFI_24821 [Reticulomyxa filosa]	[more]
gi\|742077560\|ref\|XP_010833067.1\|	5.8e-190	65.97	PREDICTED: tubulin alpha-3 chain-like [Bison bison bison]	[more]
gi\|1016161839\|gb\|KZC09001.1\|	2.9e-181	60.72	Tubulin alpha chain, partial [Dufourea novaeangliae]	[more]
gi\|829088111\|ref\|XP_012650470.1\|	5.2e-175	62.82	uncharacterized protein [Babesia microti strain RI]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000217	Tubulin
IPR002452	Alpha_tubulin
IPR003008	Tubulin_FtsZ_GTPase
IPR008280	Tub_FtsZ_C
IPR013838	Beta-tubulin_BS
IPR017975	Tubulin_CS
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR023123	Tubulin_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Molecular Function**
Term	Definition
GO:0005200	structural constituent of cytoskeleton
GO:0005525	GTP binding
GO:0003924	GTPase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0051258	protein polymerization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017440.1	CmoCh06G017440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 53..72 score: 1.6E-39coord: 154..172 score: 1.6E-39coord: 173..194 score: 1.6E-39coord: 10..30 score: 1.6
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 2..109 score: 0.0coord: 250..522 score: 0.0coord: 130..196 score:
IPR002452	Alpha tubulin	PRINTS	PR01162	ALPHATUBULIN	coord: 140..148 score: 6.0E-32coord: 45..58 score: 6.0E-32coord: 18..33 score: 6.0E-32coord: 181..192 score: 6.0E-32coord: 168..180 score: 6.0
IPR003008	Tubulin/FtsZ, GTPase domain	GENE3D	G3DSA:3.40.50.1440		coord: 251..341 score: 3.0E-118coord: 1..197 score: 3.0E
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..109 score: 3.3E-28coord: 247..286 score: 1.9E-6coord: 130..196 score: 1.5
IPR003008	Tubulin/FtsZ, GTPase domain	SMART	SM00864	Tubulin_4	coord: 49..319 score: 2.1
IPR003008	Tubulin/FtsZ, GTPase domain	unknown	SSF52490	Tubulin nucleotide-binding domain-like	coord: 1..196 score: 8.37E-65coord: 249..317 score: 1.57
IPR008280	Tubulin/FtsZ, C-terminal	unknown	SSF55307	Tubulin C-terminal domain-like	coord: 319..509 score: 1.65
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4 scor
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 162..168 scor
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	GENE3D	G3DSA:3.30.1330.20		coord: 342..456 score: 9.8
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	PFAM	PF03953	Tubulin_C	coord: 336..464 score: 2.7
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	SMART	SM00865	Tubulin_C_4	coord: 321..466 score: 1.2
IPR023123	Tubulin, C-terminal	GENE3D	G3DSA:1.10.287.600		coord: 458..511 score: 9.7
None	No IPR available	unknown	Coil	Coil	coord: 491..518 scor
None	No IPR available	PANTHER	PTHR11588:SF48	TUBULIN ALPHA-1 CHAIN-RELATED	coord: 2..109 score: 0.0coord: 250..522 score: 0.0coord: 130..196 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G017440	CmaCh14G011110	Cucurbita maxima (Rimu)	cmacmoB270
CmoCh06G017440	CmaCh06G017590	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G017440	Cp4.1LG03g09450	Cucurbita pepo (Zucchini)	cmocpeB786
CmoCh06G017440	Cp4.1LG08g06530	Cucurbita pepo (Zucchini)	cmocpeB796

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None