CmoCh06G017320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G017320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Arabinogalactan protein
Location	Cmo_Chr06 : 11876850 .. 11880885 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAAACAGCTTTCCAATAATCTCCCTATAACCAAGTGGGTATGAAGTGGAATAACATTACCTGTAGGAAATATCCAAGACGAGACCTCTGAAGCAAGCCAGATCGTCACTCTCAAACTCGTAATCATAGTCAATATCAAGAATGGCGTCGTCTCCGCTAACGCTCTCACCCCTCACACCGACACGCTGAGCGGATTTCCTCAAAGCTGAAGCCGAGGACGACGAAGGGGAAAGTCCAGTGGAGGAGGCACCGGATAAAGGAGTTCTTCGCTTAAGGGTTCGTACTGATCTGAGCTTGTGTCTCGAACGATCTTTTGGTTCTGAACCGAATGGCACTCCGTCTCCGTTGAGCAACAACTTAACCCGACTGTGTGCAGTGAATTGGGCCATTTGAGCACTTAGATAGGGTTCCTGCGAGCAGTCAATGGAGATCAAAATCGAGACTGCTCATGAGATGAAGAAATCAAACCCCAAAAGTTGAAGGGAAGAAGAAAAGAGAGCATTACATGCGCACGGAAAAGCCCATCACCACATATTTTTCCCGCACATTTCACTTCATATCTTCTGCTTCCAAAAATTGTTTTAATAATAAAAAAAACAACTTTATCAACAAAACAAATTAATTAGACAGTATTTTCACATAATAATTTTTAAAGTAAAAAAATTTAATTATTACAATATAGTTTGGTCGATGATCAATCGTAATCTTATCCACTAATGATTGCCCATTTTTTGTGGAAGGGACCTTTAAATTTCCCCAATTTTCCTCGAGGAGCGAGCCTCGTTCCCGCTAATATCCGTCAATTCTGAAGCTTCTCCCTGTGCAACCGAGGAATTTTTCCAGAAGGTCGTGGAAGTGGGCAGACAGCTGAGTTTTTAATCTCGCGTCTTCATAGGCCGGCTCAATTCTCATCTTCCATGGCTCTCAACCCTAATCTATTTCAAAATGGGATGCCCGTTCCCTTCACCAACGAGCTTTTTGTATTGGCTAGAGATGGCGTAGAATTTGTGATTGATAAGATCCCCGGGTTAGTTCCATATCCCTTTTATTTCCTTTTCGATGCCCATTACGTGACCGACCATTATAATTGCACTAGGCTGGGAGTTTGCTGTGTGGAAATTACCTAAAATTGTGTCGGTTTCTTATTTGGTTTCTGCTTTTCTAAAATTTCTGTCTGAATTGGTAATCCGATTTGCGAATTTGAGTTGATTCCTGGCGTAGAGAAATCCTGATTGACCTTGATTGTGTGAACGTCTTTTATAATTTTATTCGTATAAGCGAGGAGGAGCCGTTGAATTTAGGAACTTGATTTTTGTATTACAACATTAGAAATTTTTTGGGGTTCGTGGAATTTTTCATTGCGTTAATTCGTTTGACTTTGTTCAATTCATGCATAATTTTCTCTTCTTTTTCATTTTGAAAACCAGTGTCCGGTCATTGATCCGCCATATGTAACTTACCAAGCTGAAGGGTACGAACCAGTTGGGATTTATAGAATAATATTGTTGGACTTGTAATACCTGGATCTAGACTTCTATGGTCGAGGGGTTTTGGAGATCTCGGAATTTTCTCTGTCGCTTACTATTGTTATATTATTCGTATTAAGTGGTTTCAGGATCTGTCTCTCTCTTTTCAGATTCAGTTTCTGGCAGTTTGATTATTTTTACTTGTGAAGGTATTCTGAACGAGGGAAGCAGGGTAACTAGCTAGATTGGAAAAAAAAAAAATTTAAGAATTCGTTACTTAATTTTTTAGAACATTACGAGGCTGTCTAAAACTTTTTAAAACAATCTTAGGCGTGAAAATGTTCATACAAAAGGTTAGAAGCTTTATTTAGGGTTGTAATGGCCGTGAAAGGGGAGTACTCATCAGTCATCTCATTAACCGGAAAACAATTTCTTTGAGTCGAGAAGGTACATTGTCACTCGTTAACCTCACCCTTTGAAATGTGGCTTTAGTGTCTATTTAGGTTTGGCAGTTTTGTCTCCAGAAAAATCCTTGTGGCACAATCTACTGACAAGTAAATATAGGCTGGTCTACTCGGAAGGACGAAAGGTTTAAGTTGAAAAGGTTGGTCTACTCGGAAGGATGAAAGTTGAGTACTAGAGCCTTGACAATGTTAGTAATACCTTAGTTGGGGTGGTGTCTAGGTTGGCTGTCCGCCCCTCAAGCTCATTTTTCTAAGGTTTGACGGTATAGCTGGTGATAAATCTTGTCTGGACTGGTTGTTATCTCTTGGCTTGTATAGATCTTGTTGCACGATGGCAGAGGAGGTTCTAGATCATCCTCCTTTCGGAGATATGGGAAAAGTTTGTGGAAGACTACTTAATTAGCCATCTTGTTGAATATGTGGTTTGAAAGGAATAGAGGATTTGTTAGGTGTGGAGAGGTCTTGGGAGGTGGTCTAGTCTATGGTTAGTTTTAGTACCTCCTTTAGGTATAGTGGCAAAGGAGTCTTGCAGTTATCCTTTGTTAGTTCTTAAATTTGTATCTCTTTCACGTAGTTTGGTTTTTGTTTTGGTCCCTTCTATCCCTTGTTGGTTTCTTATATGCTGGTTGTATATCCTTTCATTTTATATTCTCTATGGTTTTTCATTAAAGAGATTTTTTTGTCAAGAATTTTCAATGACAAAGAGTTAATGGAAGGAAAGCATTTGGGATGGGATATAGCAACGAGCCTCAATTTTGTACTCCAAGCCTGTTGTCTCATGATGCTGAAGGTTCTTATGTTTCTGTTGTCTCTGAAAAGGGGCTGTTCTTTGGCGTGATTTATTTTTCTCTTTTTGTGGGGCATTTAGCATGAGGCAGATAGTATGATTCAAAGGGGTCAAGTGTTCTTTAGGCAGATTCTGTTAACTAATTTGTTAAGTCTTATTTTTAAGTTTCTATACTATAAAAATTAGAAGTTTTTATCCAATTCTGACAGATTTTATTAGTAATCAATGCCTCCTTTGTATCAATTTGGATGAACTTGGTCATAAATGGCAGAGATGATGCATAAGCGTAATGTGTTTTTACTCTCTCTTTTAGGGCTAATACTGATCGTGTTAAAGCAAAAGGGACTATTTACTTGTCAAATGTACGCATGGTCTTTGTGTCAAGTAAACCAGATCCATGGTTTACTGCATTTGACATGCCTTTGGTATGTACTTTCACTTTGTATGTTTACTTTCACTTTGTCTATCTTTGGAGGCTAACTAGTGGAATTTTTGCTTGTATAAACAAAAGGGTTTTCGTTGTGAATCAGTTTGTTGTTGAATTCATTGCATCATTTGTATTTCTAGAAACCAAATTTAGACTTTGCACCTTCTGCCCTAGCAATTATCCTTGTATTCCTTTTTCCTTGATAGCCAAATCACCACCATCATATATGTCTTATTGGAGCCCATTTTTTTTGTTTGGCTCTCATTTGTGGGCTTTATTTTTGTATACCCTAATGTTCTCTCATTCTGTCTAATATTTTGCTTGTTTCTTTTGCAGCTCTTTGTTCATGATGAAAAATTTAACCAGCCAATATTTTTCTGCAACAATATCTCTGGATTAGTCGAACCTGTAAGCATGCGAACTATTAAATTCATCTTGTTTAGTGTGTCCCGAGTCCCACTTCAGGCAGCTTAATCAATAGCTTATCTCACAGGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCGTAAGTTATCATTCGTCAAATTCGATCTCACGGTCAAGTTAAAATTTTTCATTTGATTATGTTTTTGGTGTTTAACTTGCAGATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGA

mRNA sequence

ATTCAAACAGCTTTCCAATAATCTCCCTATAACCAAGTGGGTATGAAGTGGAATAACATTACCTGTAGGAAATATCCAAGACGAGACCTCTGAAGCAAGCCAGATCGTCACTCTCAAACTCGTAATCATAGTCAATATCAAGAATGGCGTCGTCTCCGCTAACGCTCTCACCCCTCACACCGACACGCTGAGCGGATTTCCTCAAAGCTGAAGCCGAGGACGACGAAGGGGAAAGTCCAGTGGAGGAGGCACCGGATAAAGGAGTTCTTCGCTTAAGGGTTCGTACTGATCTGAGCTTGTGTCTCGAACGATCTTTTGGTTCTGAACCGAATGGCACTCCGTCTCCGTTGAGCAACAACTTAACCCGACTGTGTGCAGTGAATTGGGCCATTTGAGCACTTAGATAGGGTTCCTGCGAGCAGTCAATGGAGATCAAAATCGAGACTGCTCATGAGATGAAGAAATCAAACCCCAAAAGTTGAAGGGAAGAAGAAAAGAGAGCATTACATGCGCACGGAAAAGCCCATCACCACATATTTTTCCCGCACATTTCACTTCATATCTTCTGCTTCCAAAAATTGTTTTAATAATAAAAAAAACAACTTTATCAACAAAACAAATTAATTAGACAGTATTTTCACATAATAATTTTTAAAGTAAAAAAATTTAATTATTACAATATAGTTTGGTCGATGATCAATCGTAATCTTATCCACTAATGATTGCCCATTTTTTGTGGAAGGGACCTTTAAATTTCCCCAATTTTCCTCGAGGAGCGAGCCTCGTTCCCGCTAATATCCGTCAATTCTGAAGCTTCTCCCTGTGCAACCGAGGAATTTTTCCAGAAGGTCGTGGAAGTGGGCAGACAGCTGAGTTTTTAATCTCGCGTCTTCATAGGCCGGCTCAATTCTCATCTTCCATGGCTCTCAACCCTAATCTATTTCAAAATGGGATGCCCGTTCCCTTCACCAACGAGCTTTTTGTATTGGCTAGAGATGGCGTAGAATTTGTGATTGATAAGATCCCCGGGGCTAATACTGATCGTGTTAAAGCAAAAGGGACTATTTACTTGTCAAATGTACGCATGGTCTTTGTGTCAAGTAAACCAGATCCATGGTTTACTGCATTTGACATGCCTTTGGTATGTACTTTCACTTTGTATGTTTACTTTCACTTTGTCTATCTTTGGAGGCTAACTAGTGGAATTTTTGCTTGTATAAACAAAAGGGTTTTCGTTGTGAATCAGTTTGTTGTTGAATTCATTGCATCATTTAAACCAAATTTAGACTTTGCACCTTCTGCCCTAGCAATTATCCTTCTCTTTGTTCATGATGAAAAATTTAACCAGCCAATATTTTTCTGCAACAATATCTCTGGATTAGTCGAACCTGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGA

Coding sequence (CDS)

ATGGCTCTCAACCCTAATCTATTTCAAAATGGGATGCCCGTTCCCTTCACCAACGAGCTTTTTGTATTGGCTAGAGATGGCGTAGAATTTGTGATTGATAAGATCCCCGGGGCTAATACTGATCGTGTTAAAGCAAAAGGGACTATTTACTTGTCAAATGTACGCATGGTCTTTGTGTCAAGTAAACCAGATCCATGGTTTACTGCATTTGACATGCCTTTGGTATGTACTTTCACTTTGTATGTTTACTTTCACTTTGTCTATCTTTGGAGGCTAACTAGTGGAATTTTTGCTTGTATAAACAAAAGGGTTTTCGTTGTGAATCAGTTTGTTGTTGAATTCATTGCATCATTTAAACCAAATTTAGACTTTGCACCTTCTGCCCTAGCAATTATCCTTCTCTTTGTTCATGATGAAAAATTTAACCAGCCAATATTTTTCTGCAACAATATCTCTGGATTAGTCGAACCTGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGA

Homology

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BLAST of CmoCh06G017320 vs. TrEMBL
Match: A0A061EZY4_THECC (Plasma membrane OS=Theobroma cacao GN=TCM_025742 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 7.8e-86
Identity = 173/291 (59.45%), Postives = 206/291 (70.79%), Query Frame = 1


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNP LFQNGMP+PFTNE+ VL RDGVEF +DKIPG+N  RVKA+G IYLSN+RMVFV+
Sbjct: 1   MALNPQLFQNGMPIPFTNEMLVLVRDGVEFEVDKIPGSNGGRVKARGAIYLSNIRMVFVA 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFV----------------YLWRLTSGIFACIN--- 120
           + PD  F AFDMP      L+ Y  +V                 L  L+  +   +    
Sbjct: 61  THPDGNFFAFDMP------LFPYSPWVEDLDNVNEGSPVLKPKALVGLSQNLALLLRLLR 120

Query: 121 ---KRVFVVNQFVVEFIASFKPNL------DFAPSALAIILLFVHDEKFNQPIFFCNNIS 180
                 FVV  F+++F + +   +      D    + + + L+VHDEKFNQPIF CNNIS
Sbjct: 121 LSLATSFVVYPFLLKFPSEYLGQIVLHIEADLYIYSSSFMQLYVHDEKFNQPIFHCNNIS 180

Query: 181 GLVEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAG--PRVD 240
           G VEPVVP+++HRALYSTHSFKILFKEGGCGTFVPLF NL+SSVRQYNQ  N G  PR+D
Sbjct: 181 GHVEPVVPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNQQVNPGPEPRMD 240

Query: 241 PLQAAQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 262
           PLQAAQTPVDEMMRHAY+DP+DPT+IFLQQP T+SQLRRRTYQSQP E +M
Sbjct: 241 PLQAAQTPVDEMMRHAYIDPNDPTRIFLQQPDTQSQLRRRTYQSQPVEGSM 285

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BLAST of CmoCh06G017320 vs. TrEMBL
Match: A0A0A0LI97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G845430 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.3e-66
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 117 SFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKIL 176
           S KP+  F  +A  + LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKIL
Sbjct: 60  SNKPDPVF--TAFDMPLLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKIL 119

Query: 177 FKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKI 236
           FKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKI
Sbjct: 120 FKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKI 179

Query: 237 FLQQPSTESQLRRRTYQSQPAENAM 262
           FLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 180 FLQQPATESQLRRRTYQSQPAENAM 202

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BLAST of CmoCh06G017320 vs. TrEMBL
Match: A0A067FCI8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028854mg PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.1e-58
Identity = 115/151 (76.16%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 112 VEFIASFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTH 171
           V F+AS KP  +F   A  + LL++HDEKFNQPIF CNNISG VEPV+P+++HRALYSTH
Sbjct: 54  VVFVAS-KPVGNFV--AFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTH 113

Query: 172 SFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAG--PRVDPLQAAQTPVDEMMRHAYVD 231
           SFKILFKEGGCGTFVPLF NL+SSVRQYN+ +N G  PRVDPLQAAQTPVDEMMRHAYVD
Sbjct: 114 SFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVD 173

Query: 232 PHDPTKIFLQQPSTESQLRRRTYQSQPAENA 261
           P+DPTKIFLQQP++ESQLRRRTY SQP E++
Sbjct: 174 PNDPTKIFLQQPNSESQLRRRTYHSQPVEHS 201

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BLAST of CmoCh06G017320 vs. TrEMBL
Match: V4SB17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005917mg PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.1e-58
Identity = 114/151 (75.50%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 112 VEFIASFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTH 171
           + F+AS KP  +F   A  + LL++HDEKFNQPIF CNNISG VEPV+P+++HRALYSTH
Sbjct: 54  IVFVAS-KPVGNFV--AFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTH 113

Query: 172 SFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAG--PRVDPLQAAQTPVDEMMRHAYVD 231
           SFKILFKEGGCGTFVPLF NL+SSVRQYN+ +N G  PRVDPLQAAQTPVDEMMRHAYVD
Sbjct: 114 SFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVD 173

Query: 232 PHDPTKIFLQQPSTESQLRRRTYQSQPAENA 261
           P+DPTKIFLQQP++ESQLRRRTY SQP E++
Sbjct: 174 PNDPTKIFLQQPNSESQLRRRTYHSQPVEHS 201

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BLAST of CmoCh06G017320 vs. TrEMBL
Match: A0A0D2R3Z6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G253600 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 116/162 (71.60%), Postives = 130/162 (80.25%), Query Frame = 1


Query: 102 KRVFVVNQFVVEFIASFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPD 161
           + VFV ++ V  F A   P            LL+VHDEKFNQPIF CNNISG VEPVVP+
Sbjct: 55  RMVFVASRPVGNFFAFDMP------------LLYVHDEKFNQPIFHCNNISGQVEPVVPE 114

Query: 162 DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTN--AGPRVDPLQAAQTPV 221
           ++HRALYSTHSFKILFKEGGCGTFVPLF NL++SVR+YNQ  N    PRVDPLQAAQTP+
Sbjct: 115 NEHRALYSTHSFKILFKEGGCGTFVPLFLNLIASVRRYNQQVNHEPQPRVDPLQAAQTPI 174

Query: 222 DEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 262
           DEMMRHAYVDP+DPTKIFLQQP+TESQLRRRTYQSQP E +M
Sbjct: 175 DEMMRHAYVDPNDPTKIFLQQPTTESQLRRRTYQSQPVEGSM 204

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BLAST of CmoCh06G017320 vs. TAIR10
Match: AT5G11680.1 (AT5G11680.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 211.5 bits (537), Expect = 6.4e-55
Identity = 109/165 (66.06%), Postives = 128/165 (77.58%), Query Frame = 1


Query: 102 KRVFVVNQFVVEFIASFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPD 161
           K V  ++   + F++S KP  +F   A  + LL++H EKFNQPIF CNNI+G VEPVVP+
Sbjct: 46  KGVIYLSNIRMVFVSS-KPVDNFV--AFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPE 105

Query: 162 DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTN-------AGPRVDPLQA 221
           ++HRALYSTHSFKILFKEGGCGTFVPLF NL+SSVRQYN+          A P VDPLQA
Sbjct: 106 NEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQA 165

Query: 222 AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAEN 260
           AQTPVDEMMRHAYVDP+DPT+I+LQQPS ESQLRRR Y S  AE+
Sbjct: 166 AQTPVDEMMRHAYVDPNDPTRIYLQQPSGESQLRRRAYHSGAAEH 207

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: gi|590640128|ref|XP_007029869.1| (Plasma membrane [Theobroma cacao])

HSP 1 Score: 325.1 bits (832), Expect = 1.1e-85
Identity = 173/291 (59.45%), Postives = 206/291 (70.79%), Query Frame = 1


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNP LFQNGMP+PFTNE+ VL RDGVEF +DKIPG+N  RVKA+G IYLSN+RMVFV+
Sbjct: 1   MALNPQLFQNGMPIPFTNEMLVLVRDGVEFEVDKIPGSNGGRVKARGAIYLSNIRMVFVA 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFV----------------YLWRLTSGIFACIN--- 120
           + PD  F AFDMP      L+ Y  +V                 L  L+  +   +    
Sbjct: 61  THPDGNFFAFDMP------LFPYSPWVEDLDNVNEGSPVLKPKALVGLSQNLALLLRLLR 120

Query: 121 ---KRVFVVNQFVVEFIASFKPNL------DFAPSALAIILLFVHDEKFNQPIFFCNNIS 180
                 FVV  F+++F + +   +      D    + + + L+VHDEKFNQPIF CNNIS
Sbjct: 121 LSLATSFVVYPFLLKFPSEYLGQIVLHIEADLYIYSSSFMQLYVHDEKFNQPIFHCNNIS 180

Query: 181 GLVEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAG--PRVD 240
           G VEPVVP+++HRALYSTHSFKILFKEGGCGTFVPLF NL+SSVRQYNQ  N G  PR+D
Sbjct: 181 GHVEPVVPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNQQVNPGPEPRMD 240

Query: 241 PLQAAQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 262
           PLQAAQTPVDEMMRHAY+DP+DPT+IFLQQP T+SQLRRRTYQSQP E +M
Sbjct: 241 PLQAAQTPVDEMMRHAYIDPNDPTRIFLQQPDTQSQLRRRTYQSQPVEGSM 285

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: gi|449446783|ref|XP_004141150.1| (PREDICTED: uncharacterized protein LOC101208147 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 7.6e-66
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 117 SFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKIL 176
           S KP+  F  +A  + LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKIL
Sbjct: 60  SNKPDPVF--TAFDMPLLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKIL 119

Query: 177 FKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKI 236
           FKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKI
Sbjct: 120 FKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKI 179

Query: 237 FLQQPSTESQLRRRTYQSQPAENAM 262
           FLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 180 FLQQPATESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: gi|659130440|ref|XP_008465172.1| (PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 7.6e-66
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 117 SFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKIL 176
           S KP+  F  +A  + LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKIL
Sbjct: 60  SNKPDPVF--TAFDMPLLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKIL 119

Query: 177 FKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKI 236
           FKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKI
Sbjct: 120 FKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKI 179

Query: 237 FLQQPSTESQLRRRTYQSQPAENAM 262
           FLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 180 FLQQPTTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: gi|641842245|gb|KDO61152.1| (hypothetical protein CISIN_1g028854mg [Citrus sinensis])

HSP 1 Score: 233.4 bits (594), Expect = 4.5e-58
Identity = 115/151 (76.16%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 112 VEFIASFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTH 171
           V F+AS KP  +F   A  + LL++HDEKFNQPIF CNNISG VEPV+P+++HRALYSTH
Sbjct: 54  VVFVAS-KPVGNFV--AFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTH 113

Query: 172 SFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAG--PRVDPLQAAQTPVDEMMRHAYVD 231
           SFKILFKEGGCGTFVPLF NL+SSVRQYN+ +N G  PRVDPLQAAQTPVDEMMRHAYVD
Sbjct: 114 SFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVD 173

Query: 232 PHDPTKIFLQQPSTESQLRRRTYQSQPAENA 261
           P+DPTKIFLQQP++ESQLRRRTY SQP E++
Sbjct: 174 PNDPTKIFLQQPNSESQLRRRTYHSQPVEHS 201

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BLAST of CmoCh06G017320 vs. NCBI nr
Match: gi|568881706|ref|XP_006493693.1| (PREDICTED: uncharacterized protein LOC102610669 isoform X1 [Citrus sinensis])

HSP 1 Score: 233.4 bits (594), Expect = 4.5e-58
Identity = 115/151 (76.16%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 112 VEFIASFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTH 171
           + F+AS KP  +F   A  + LL++HDEKFNQPIF CNNISG VEPVVP+++HRALYSTH
Sbjct: 54  IVFVAS-KPVGNFV--AFDMPLLYIHDEKFNQPIFHCNNISGFVEPVVPENEHRALYSTH 113

Query: 172 SFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAG--PRVDPLQAAQTPVDEMMRHAYVD 231
           SFKILFKEGGCGTFVPLF NL+SSVRQYN+ +N G  PRVDPLQAAQTPVDEMMRHAYVD
Sbjct: 114 SFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVD 173

Query: 232 PHDPTKIFLQQPSTESQLRRRTYQSQPAENA 261
           P+DPTKIFLQQP++ESQLRRRTY SQP E++
Sbjct: 174 PNDPTKIFLQQPNSESQLRRRTYHSQPVEHS 201

The following BLAST results are available for this feature:

BLAST of CmoCh06G017320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G017320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EZY4_THECC	7.8e-86	59.45	Plasma membrane OS=Theobroma cacao GN=TCM_025742 PE=4 SV=1	[more]
A0A0A0LI97_CUCSA	5.3e-66	87.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G845430 PE=4 SV=1	[more]
A0A067FCI8_CITSI	3.1e-58	76.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028854mg PE=4 SV=1	[more]
V4SB17_9ROSI	4.1e-58	75.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005917mg PE=4 SV=1	[more]
A0A0D2R3Z6_GOSRA	1.2e-57	71.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G253600 PE=4 SV=1	[more]

BLAST of CmoCh06G017320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11680.1	6.4e-55	66.06	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh06G017320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590640128\|ref\|XP_007029869.1\|	1.1e-85	59.45	Plasma membrane [Theobroma cacao]	[more]
gi\|449446783\|ref\|XP_004141150.1\|	7.6e-66	87.59	PREDICTED: uncharacterized protein LOC101208147 [Cucumis sativus]	[more]
gi\|659130440\|ref\|XP_008465172.1\|	7.6e-66	87.59	PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo]	[more]
gi\|641842245\|gb\|KDO61152.1\|	4.5e-58	76.16	hypothetical protein CISIN_1g028854mg [Citrus sinensis]	[more]
gi\|568881706\|ref\|XP_006493693.1\|	4.5e-58	76.16	PREDICTED: uncharacterized protein LOC102610669 isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004182	GRAM
IPR011993	PH-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017320.1	CmoCh06G017320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004182	GRAM domain	PFAM	PF02893	GRAM	coord: 29..74 score: 1.
IPR011993	PH domain-like	unknown	SSF50729	PH domain-like	coord: 1..75 score: 2.79
None	No IPR available	PANTHER	PTHR31606	FAMILY NOT NAMED	coord: 124..261 score: 1.5E-65coord: 2..66 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G017320	Cucsa.340680	Cucumber (Gy14) v1	cgycmoB0941
CmoCh06G017320	CmaCh14G010730	Cucurbita maxima (Rimu)	cmacmoB273
CmoCh06G017320	CmaCh06G017450	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G017320	Cla017189	Watermelon (97103) v1	cmowmB785
CmoCh06G017320	Csa3G845430	Cucumber (Chinese Long) v2	cmocuB810
CmoCh06G017320	MELO3C026760	Melon (DHL92) v3.5.1	cmomeB748
CmoCh06G017320	ClCG10G013180	Watermelon (Charleston Gray)	cmowcgB732
CmoCh06G017320	CSPI03G40940	Wild cucumber (PI 183967)	cmocpiB818
CmoCh06G017320	Lsi03G012810	Bottle gourd (USVL1VR-Ls)	cmolsiB748
CmoCh06G017320	Cp4.1LG03g09320	Cucurbita pepo (Zucchini)	cmocpeB786
CmoCh06G017320	Cp4.1LG08g06600	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G017320	MELO3C026760.2	Melon (DHL92) v3.6.1	cmomedB850
CmoCh06G017320	CsaV3_3G043430	Cucumber (Chinese Long) v3	cmocucB0956
CmoCh06G017320	Bhi11G001278	Wax gourd	cmowgoB0989
CmoCh06G017320	CsGy3G038400	Cucumber (Gy14) v2	cgybcmoB404
CmoCh06G017320	Carg11282	Silver-seed gourd	carcmoB1106
CmoCh06G017320	Carg23328	Silver-seed gourd	carcmoB0383

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G017320	CmoCh14G010910	Cucurbita moschata (Rifu)	cmocmoB226

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G017320	Watermelon (97103) v2	cmowmbB821
CmoCh06G017320	Cucurbita maxima (Rimu)	cmacmoB270