CmoCh06G017150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G017150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DUF1639 family protein
Location	Cmo_Chr06 : 11798578 .. 11799119 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGATTTAATAGTCATCAATTACAATCTTCGATTGTATGAGGGTATGTGATTCGCCAGATCTTGTGATTAGAGATCGATTCTTCCACTTCTTCAGTCTCATATGTGCTTTCCTTTTCTCTGTATGAAGTTCTCTGAGAACTTGAGAAGGGGAGAGTTCCGGCAGAATCTGGATTAGTCGTCTGCTTCATTCCGTTTCCATAGTCGTTTCAATTGCAAATTTATAAATTTCTCTTTGTTTTCCCCTTTGCAGGTATGGAGACGGAGGTGAGGAATCAGAATCAGAGAGGTTGTAAGCCTTTAGAACCGGAGGTGTTCTTACAGTGGGCAAAGAGGAAGCGACTGCGATGTGCTAGAATCAAAGACCCTGAGATCTCCGAGCGATTGTGCGGCGGCCTACGGAAGAAAATCGCATCTCGGGCCGATCGCTGTGTGGTTTCTGGTTCCGAGAAAGAAAGAACCCCACTCCAACCTAATCGCCTAACTAGGTCAGTCAGAAATTCACGCCTATTTCCTGTTCCACCACACTCTTTTTGA

mRNA sequence

ATGGGTTTTGATTTAATAGTCATCAATTACAATCTTCGATTGTATGAGGGTATGGAGACGGAGGTGAGGAATCAGAATCAGAGAGGTTGTAAGCCTTTAGAACCGGAGGTGTTCTTACAGTGGGCAAAGAGGAAGCGACTGCGATGTGCTAGAATCAAAGACCCTGAGATCTCCGAGCGATTGTGCGGCGGCCTACGGAAGAAAATCGCATCTCGGGCCGATCGCTGTGTGGTTTCTGGTTCCGAGAAAGAAAGAACCCCACTCCAACCTAATCGCCTAACTAGGTCAGTCAGAAATTCACGCCTATTTCCTGTTCCACCACACTCTTTTTGA

Coding sequence (CDS)

ATGGGTTTTGATTTAATAGTCATCAATTACAATCTTCGATTGTATGAGGGTATGGAGACGGAGGTGAGGAATCAGAATCAGAGAGGTTGTAAGCCTTTAGAACCGGAGGTGTTCTTACAGTGGGCAAAGAGGAAGCGACTGCGATGTGCTAGAATCAAAGACCCTGAGATCTCCGAGCGATTGTGCGGCGGCCTACGGAAGAAAATCGCATCTCGGGCCGATCGCTGTGTGGTTTCTGGTTCCGAGAAAGAAAGAACCCCACTCCAACCTAATCGCCTAACTAGGTCAGTCAGAAATTCACGCCTATTTCCTGTTCCACCACACTCTTTTTGA

Homology

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BLAST of CmoCh06G017150 vs. TrEMBL
Match: A0A0A0LFM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843240 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.0e-31
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 18 METEVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERLCGGLRKKIASRADRCV 77
          METEVRNQNQRGCK LEPEVFLQW KRKRLRC R KDPEISERLCG LRKKI SR+DRCV
Sbjct: 1  METEVRNQNQRGCKALEPEVFLQWGKRKRLRCPRNKDPEISERLCGSLRKKIGSRSDRCV 60

Query: 78 VSGSEKERTPLQPNRLTRS 97
          +S SEKER PLQPNRLTR+
Sbjct: 61 ISASEKERIPLQPNRLTRN 79

[Close]

BLAST of CmoCh06G017150 vs. TrEMBL
Match: D7TI71_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07340 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-14
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 21  EVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERLCGGLRKKIASRADRCVVSG 80
           E   ++QR  K  E + FLQW  RKRLRC R+KDP +S R  G +R+KI SR DR VV+G
Sbjct: 2   EKEEKSQRTYKGPETDFFLQWGNRKRLRCVRVKDPNVSVRSNGAIRRKITSRIDRSVVTG 61

Query: 81  SEKERTPLQPNRLTRSVRNSRL 103
           SEKE   LQP+R TR+   + L
Sbjct: 62  SEKESAHLQPSRFTRNTEGATL 83

[Close]

BLAST of CmoCh06G017150 vs. TrEMBL
Match: V7CUY4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G111300g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-14
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 1


Query: 18 METEVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERLCGGLRKKIASRAD-RC 77
          METE RNQ  +GCK  EPE FLQW  RKRLRC R+KDP IS RL GG+R+K+ S  D R 
Sbjct: 1  METEERNQ--KGCKGSEPEFFLQWGHRKRLRCVRVKDPRISTRLNGGIRRKLGSALDHRS 60

Query: 78 VVSGSEKERT----PLQPNRLTRS 97
           V+ +EKE +      QPNRLTR+
Sbjct: 61 GVTVAEKESSHHHHHHQPNRLTRN 82

[Close]

BLAST of CmoCh06G017150 vs. TrEMBL
Match: I3T0W3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-13
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 21 EVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERL--CGGLRKKIASRAD--RC 80
          E+  +NQR CK  EPE FLQW  RKRLRC R+KDP IS RL   GG+R+K+AS  D  R 
Sbjct: 2  EIEERNQRACKASEPEFFLQWGNRKRLRCVRVKDPRISTRLNGGGGIRRKLASGVDHHRS 61

Query: 81 VVSGSEKERT---PLQPNRLTRS 97
           V+ SEKE +     QPNRLTR+
Sbjct: 62 GVTASEKETSHHPHQQPNRLTRN 84

[Close]

BLAST of CmoCh06G017150 vs. TrEMBL
Match: I3SMD9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-13
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 21 EVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERL--CGGLRKKIASRAD--RC 80
          E+  +NQR CK  EPE FLQW  RKRLRC R+KDP IS RL   GG+R+K+AS  D  R 
Sbjct: 2  EIEERNQRACKASEPEFFLQWGNRKRLRCVRVKDPRISTRLNGGGGIRRKLASGVDHHRS 61

Query: 81 VVSGSEKERT---PLQPNRLTRS 97
           V+ SEKE +     QPNRLTR+
Sbjct: 62 GVTASEKETSHHPHQQPNRLTRN 84

[Close]

BLAST of CmoCh06G017150 vs. NCBI nr
Match: gi|778686028|ref|XP_011652319.1| (PREDICTED: uncharacterized protein LOC101204535 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 5.7e-31
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 18 METEVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERLCGGLRKKIASRADRCV 77
          METEVRNQNQRGCK LEPEVFLQW KRKRLRC R KDPEISERLCG LRKKI SR+DRCV
Sbjct: 1  METEVRNQNQRGCKALEPEVFLQWGKRKRLRCPRNKDPEISERLCGSLRKKIGSRSDRCV 60

Query: 78 VSGSEKERTPLQPNRLTRS 97
          +S SEKER PLQPNRLTR+
Sbjct: 61 ISASEKERIPLQPNRLTRN 79

[Close]

BLAST of CmoCh06G017150 vs. NCBI nr
Match: gi|659130713|ref|XP_008465311.1| (PREDICTED: uncharacterized protein LOC103502965 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-30
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 18 METEVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERLCGGLRKKIASRADRCV 77
          METEVRNQNQRGCK LEPEVFLQW KRKRLRC R KDPEISERLCG LRKKI SR+ RCV
Sbjct: 1  METEVRNQNQRGCKALEPEVFLQWGKRKRLRCPRNKDPEISERLCGSLRKKIGSRSGRCV 60

Query: 78 VSGSEKERTPLQPNRLTRS 97
          +S SEKER PLQPNRLTR+
Sbjct: 61 ISASEKERIPLQPNRLTRN 79

[Close]

BLAST of CmoCh06G017150 vs. NCBI nr
Match: gi|1009162316|ref|XP_015899373.1| (PREDICTED: uncharacterized protein LOC107432699 [Ziziphus jujuba])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 18  METEVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERL-CGGLRKKI-ASRADR 77
           METE RNQ  R CK  EPE FLQW  +KRLRC R+K  +++ER   GG+R+KI +SR DR
Sbjct: 1   METEERNQ--RACKASEPEFFLQWGNKKRLRCVRVKGSDVAERFGGGGIRRKISSSRIDR 60

Query: 78  CVVSGSEKERT-PLQPNRLTRSVRNSRL 103
           C+V+ S+KE +  LQPNRLTR+   + L
Sbjct: 61  CLVTASDKEISHHLQPNRLTRNSEGATL 86

[Close]

BLAST of CmoCh06G017150 vs. NCBI nr
Match: gi|225441607|ref|XP_002281809.1| (PREDICTED: uncharacterized protein LOC100255634 [Vitis vinifera])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 21  EVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERLCGGLRKKIASRADRCVVSG 80
           E   ++QR  K  E + FLQW  RKRLRC R+KDP +S R  G +R+KI SR DR VV+G
Sbjct: 2   EKEEKSQRTYKGPETDFFLQWGNRKRLRCVRVKDPNVSVRSNGAIRRKITSRIDRSVVTG 61

Query: 81  SEKERTPLQPNRLTRSVRNSRL 103
           SEKE   LQP+R TR+   + L
Sbjct: 62  SEKESAHLQPSRFTRNTEGATL 83

[Close]

BLAST of CmoCh06G017150 vs. NCBI nr
Match: gi|951070910|ref|XP_014490981.1| (PREDICTED: uncharacterized protein LOC106753654 [Vigna radiata var. radiata])

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-14
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 18 METEVRNQNQRGCKPLEPEVFLQWAKRKRLRCARIKDPEISERLCGGLRKKIASRAD-RC 77
          METE RNQ  +GCK  EPE FLQW  RKRLRC R+KDP IS RL GG+R+K+ S  D R 
Sbjct: 1  METEERNQ--KGCKGSEPEFFLQWGHRKRLRCVRVKDPRISTRLNGGIRRKLGSALDHRS 60

Query: 78 VVSG---SEKERT---PLQPNRLTRS 97
           VSG   +EKE +     QPNRLTR+
Sbjct: 61 GVSGVTVAEKEASHNHHQQPNRLTRN 84

The following BLAST results are available for this feature:

BLAST of CmoCh06G017150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G017150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFM7_CUCSA	4.0e-31	86.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843240 PE=4 SV=1	[more]
D7TI71_VITVI	3.4e-14	52.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07340 PE=4 SV=...	[more]
V7CUY4_PHAVU	5.8e-14	58.33	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G111300g PE=4 SV=1	[more]
I3T0W3_LOTJA	2.2e-13	56.63	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I3SMD9_LOTJA	2.2e-13	56.63	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CmoCh06G017150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G017150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778686028\|ref\|XP_011652319.1\|	5.7e-31	86.08	PREDICTED: uncharacterized protein LOC101204535 [Cucumis sativus]	[more]
gi\|659130713\|ref\|XP_008465311.1\|	3.7e-30	84.81	PREDICTED: uncharacterized protein LOC103502965 [Cucumis melo]	[more]
gi\|1009162316\|ref\|XP_015899373.1\|	2.2e-14	55.68	PREDICTED: uncharacterized protein LOC107432699 [Ziziphus jujuba]	[more]
gi\|225441607\|ref\|XP_002281809.1\|	4.8e-14	52.44	PREDICTED: uncharacterized protein LOC100255634 [Vitis vinifera]	[more]
gi\|951070910\|ref\|XP_014490981.1\|	8.3e-14	59.30	PREDICTED: uncharacterized protein LOC106753654 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017150.1	CmoCh06G017150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33130	FAMILY NOT NAMED	coord: 1..101 score: 3.9
None	No IPR available	PANTHER	PTHR33130:SF4	SUBFAMILY NOT NAMED	coord: 1..101 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G017150	CmaCh14G010900	Cucurbita maxima (Rimu)	cmacmoB270
CmoCh06G017150	CmaCh06G017270	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G017150	Cla017167	Watermelon (97103) v1	cmowmB785
CmoCh06G017150	Csa3G843240	Cucumber (Chinese Long) v2	cmocuB810
CmoCh06G017150	ClCG10G013410	Watermelon (Charleston Gray)	cmowcgB732
CmoCh06G017150	CSPI03G40730	Wild cucumber (PI 183967)	cmocpiB818
CmoCh06G017150	Lsi03G013030	Bottle gourd (USVL1VR-Ls)	cmolsiB748
CmoCh06G017150	Cp4.1LG03g09190	Cucurbita pepo (Zucchini)	cmocpeB786
CmoCh06G017150	CsaV3_3G043230	Cucumber (Chinese Long) v3	cmocucB0956
CmoCh06G017150	Cla97C10G196200	Watermelon (97103) v2	cmowmbB821
CmoCh06G017150	Bhi11G001302	Wax gourd	cmowgoB0989
CmoCh06G017150	CsGy3G038210	Cucumber (Gy14) v2	cgybcmoB404
CmoCh06G017150	Carg15413	Silver-seed gourd	carcmoB0947

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G017150	Cucurbita pepo (Zucchini)	cmocpeB796