CmoCh06G015720 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G015720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr06 : 11078750 .. 11080945 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTCATAAGTCATTCATTTTCCTTGTCACTCCCTTCATTGAAGGGTTCGATGTGTTTCAAATACAGATTTGGTGTCTTTTAGCTTCCATTTTTCTCTGGTTACAATAATGTTCTGCTTCGATACCCGAGTTTCGAATAACATGAGATCGGAATATGTTGAACAATTGAATCCTTAAGATCCAGTTGAGTTTACTTGTGTGAATGCAGGGTAATAAGTGCGGCAGCCGAACACGAATTAGAAACGAAGATCGATGATGTGAAAGCTTATACAAGGGTTTACTGACATTCTGTGATGTAGGTGGTTCTTGATTTGGGGCAATAATGGTTTAGATCTTTCTTATAATTGTGAAGTTGATGAGTTTATATGGATTATTACTGTCTCAAGTTCTTTTTCGAATGAAGTTTGTCTCTTGAGAAATGCTTCATAACTTGAGATTTTAGATTTTTGTTTGGAAAGAATACCGAAACTTTATACTCTTTCAAGTTCATATTCAAATATTGTCCAACCGTCAGTCTCAGTTTTAGAACGCGTTTATTAGGGAGAGATTTCCACACCCTAATAATGTTTTGTTCCCCTCATCCACCCCCTTGGGGGCCCAACATCTTCACTAGCACACCGCCCGGTATCGGGCTCTAACACTAGTTACCTTGTCTCAGCTCTAACACTAGTTACCTTGTCTCATTCTTGTATCCATTTGCTTTCACTACTCCATAAATGGAGACTTGTCGTCCTATTGCTTGACTAATTTAATATTCGGGATACGATGGTATCTTGAGATTCTTCTTATATATTGCTCACATATTAATATTTAAATTGTTAATGTCTCCTTTAATTTTAGTTGAAGAAATGTAAGCGTGGGAATCAAATGTTTAAGGAATATTCTCATTCATTTTGTAATATCAAAAAAGTAATTAAATATTTTATGAAGTTTCGAAACAACAAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCATTATTATTTTTATTTTTCGAATTATTATTTTTTCTATCTAATACTCTATAATGGTCCCATAAAACGCAGCACCGCCCGTCGTTTTGTCAGCGAATGGTTTCATGGTAGCCTAGCCTCTGCCTCATTACCGACCAACAAACTGCCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGCTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGTATTGATTTTTGCTGCAGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGAAGTGGAATCTATAACTTCAATAGCTTTAATTTCTACTTCGCTTGATATATGATGTTCAGATACTCGGTTTCTGTTTAGTTTTAGTTTAGCTCATTTCCTGTATGTAGTCGAATTTGTAGTTTAGATCCTTCGCGCTGTTAATCGATTTCTGGCGCCTGATAGTGTTGCTTGAAGTAGAATCCATAGCTTCAATAGCTTTGATTTGTACTTTTCTTCAAATATGTTGTTTAGATACTCGGTTTCTGTTTAGCTTTAGCTCATTTCCTATATGTACTTGAATTTGTAGTTAAGATCCTTCCTTAGTGATTCTTCAATTGTACAAGCTGTAAGTTCTAAGTGCTTCTCGCGAAATTGGCTTTTCACAAGCCCCCTGGCTTAAATTATACCAATGTGCATGTGAGTTAAAAGCTACCATTGCTCAGTTCGAGCACTTTTGGTCGATTGCTTGGTAGCTACAATTGAAAAGGAGTTCTTGTATCGTAGTTTTTCTTTCAGCTTCGAGTATAAATCTGGTCCAAGATTTAGGTTTGTGTCTATTATAACTTGAGGAATTGGGACAAAGAAGCTCTGGACAGCATATGAGTTTTGTTTCCGTGCTGTAACCTTCCGTTAGGCCCGTGTCGGTCAAATGCATGTTATTTTCGCTTGTGGAGTCCATTTTCTTACAGAGGTAGTCTAGATTTTGATGATCCATTTTGATTTGTGTCAATTATCATTATGTATCATTTGAAGCTTAATTCAAGTGCTGAGCTTAGCATCCTCTTGTAATTCACAGGGAGTTTCTTAAAATGAAGTGGTAG

mRNA sequence

ATGACTTTCATAAGTCATTCATTTTCCTTGTCACTCCCTTCATTGAAGGGTTCGATGTGTTTCAAATACAGATTTGGTCCTAGCCTCTGCCTCATTACCGACCAACAAACTGCCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGCTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGGAGTTTCTTAAAATGAAGTGGTAG

Coding sequence (CDS)

ATGACTTTCATAAGTCATTCATTTTCCTTGTCACTCCCTTCATTGAAGGGTTCGATGTGTTTCAAATACAGATTTGGTCCTAGCCTCTGCCTCATTACCGACCAACAAACTGCCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGCTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGGAGTTTCTTAAAATGAAGTGGTAG
Homology
[Close]
BLAST of CmoCh06G015720 vs. TrEMBL
Match: A0A0A0L5Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G169480 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 35 QQTAGKYQLPITGLVLLLLCSSVFELKRKIHLNGWLTLLLLLLP-SDSSRWKLETREFLK 94
          Q TAGK QLPITG++LLL CSS FEL+R+I    WL  +    P S+S  WKLE R FLK
Sbjct: 18 QLTAGKRQLPITGIILLLHCSSAFELRRRIQFE-WLLHIANTYPISESFCWKLEIRMFLK 76

[Close]
BLAST of CmoCh06G015720 vs. NCBI nr
Match: gi|700202055|gb|KGN57188.1| (hypothetical protein Csa_3G169480 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 35 QQTAGKYQLPITGLVLLLLCSSVFELKRKIHLNGWLTLLLLLLP-SDSSRWKLETREFLK 94
          Q TAGK QLPITG++LLL CSS FEL+R+I    WL  +    P S+S  WKLE R FLK
Sbjct: 18 QLTAGKRQLPITGIILLLHCSSAFELRRRIQFE-WLLHIANTYPISESFCWKLEIRMFLK 76

The following BLAST results are available for this feature:
BLAST of CmoCh06G015720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh06G015720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5Y7_CUCSA1.3e-0658.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G169480 PE=4 SV=1[more]
BLAST of CmoCh06G015720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh06G015720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202055|gb|KGN57188.1|1.9e-0658.33hypothetical protein Csa_3G169480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G015720.1CmoCh06G015720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G015720Csa3G169480Cucumber (Chinese Long) v2cmocuB806
CmoCh06G015720CsaV3_3G015380Cucumber (Chinese Long) v3cmocucB0953
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G015720Watermelon (97103) v2cmowmbB833
CmoCh06G015720Wax gourdcmowgoB1005
CmoCh06G015720Cucurbita moschata (Rifu)cmocmoB224
CmoCh06G015720Cucumber (Gy14) v1cgycmoB0718
CmoCh06G015720Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G015720Cucurbita maxima (Rimu)cmacmoB363
CmoCh06G015720Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G015720Wild cucumber (PI 183967)cmocpiB814
CmoCh06G015720Melon (DHL92) v3.5.1cmomeB755
CmoCh06G015720Watermelon (Charleston Gray)cmowcgB743
CmoCh06G015720Watermelon (Charleston Gray)cmowcgB747
CmoCh06G015720Watermelon (97103) v1cmowmB793
CmoCh06G015720Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G015720Cucurbita pepo (Zucchini)cmocpeB796
CmoCh06G015720Bottle gourd (USVL1VR-Ls)cmolsiB759
CmoCh06G015720Cucumber (Gy14) v2cgybcmoB401
CmoCh06G015720Melon (DHL92) v3.6.1cmomedB857
CmoCh06G015720Silver-seed gourdcarcmoB0103
CmoCh06G015720Silver-seed gourdcarcmoB0390
CmoCh06G015720Silver-seed gourdcarcmoB1007