CmoCh06G014550 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G014550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionInosine-uridine preferring nucleoside hydrolase
LocationCmo_Chr06 : 10496377 .. 10498130 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGCGTTCTTCGGCTGTTGAGGAACTGCAACCTCGACGACGTTCGACCACACAGAGTGCGAAGCGTGCGGTGGCAGCCACTCCCTAGGGTACCTACACAGCGCAATGGCGGAAAACACAAGGCAACGATGAGACTAGAATGACGAAGAAGAACCTATCAAAGAGGTTTGAACTTACCACAATGTTGATTACGACGATGAACCACCTCGACTGCGCCCGGGAGTGAAGCAGGCGAGCGGCGGGAATCGAAATGTCTTCACTCTGTTTGTTGCTGATTTGTAAACGTCTAAGAAACTCTCTGCAGGAAAAAAAAGGACATCCAATCTTGTCTTTGCCATCGTTTGCTGTCAAGACTCTTTACACTTGAAGCAATTATACATCGATTACAAGCATGTGGTAAGAAATTGCCTATTAATTTGCATAGAGGACTTCAATTCCTCCTATTCTTCATAATTTTTGTTTGGTTAATTTCTCTTCTACGCAATATATTATACCGATTCAGAACCTGTGGATTTCATATGAAAATCGACTGTTATTTTCTGTCATAACAGCGTATTGGTCTGCTGGAGGAAACTTTGTTGGGGGAAATTCTTGGTGCCGTAGTTCTGGCTGAAGGTCTGATTGAGCCAGCTCTTGAATCCAAGCCTGTAAAAATCTTTGCGGATAGTGATGAATCTCAAGATGGCCAAACTGTCATCTATGAACCGAACAGCCTACTTTGATCTATTTGCAAAGCGGGTAAGTGATAAGATACAATCTCAATCTGCAGTGGTCAAAAGCTTTAGTGACCAAAAAGGAATGTGGAATAAACAAACTGCAAAACCATGCCTGTAATTATTGCCATGGGTCATGTGTTTGCTGATATTCATCAAACTTTTGGGGCATTTGAATGAGAAAAGTTGGCATTTCGTGGGTCATAGAAAGCAACAAAACAATAAATCTAGAACCAACCACCCAAGTCTTATCGGTAACCGATATTGTCTTCTTTAAAAAGCATTTATTAGGAAGAGATTTCCACAACTTTTTAGAGAATGTTTTGTTCCCCTCTTCAACTGAGGTGGGATCTCACAGTCCACCCCCTTGGGGTCCAACACCATTACTGGCACACCGCTCGATGTCTGATTTTGATACCATTGTAACAACCCAAGTCCACGCTAGTAAATATTATCCACTTTGACCTGTTACGCATCGCTATCAGTCTCATGGTTTTAAAACATGTCCACTAAGGAGAGGTTTTTACACTCTTGTAAGAAATGATTTGTTCCCCCTCCAACAAATGTAGGATCTCATGTATTGTTCGATGCCTGCCTACTTAGTCCATAGTTTGCATTACTTCATTCCAAATAGAGTTGAAGTCCAAGAAAATTCAAACTAGACCCAGAAATGTGATCAATATGTTTTGATTAGCAGAAAACAAAGGGAACAAAGACATGAAGAGAGTATTTGCCTCTTTGAAAGCACCCAGAAATCTTCTAGGACTCCATACATAACAAATAGTTAAGCTCAAAGACACAGAAAAGTCGAAAATTCAGCTGTAGAAAGCAATGATGTTCTGAGGGAAAAGGGAAAAGGCTTTGAATTTGTACAAGCACAAGTAACAGTCAATTTGAGAACCTAAAGAAGAACAAGAGAAAGGAGATTCCACAAGAACAAATGAAAATCTTGGTTCATGGATTTTTTCAGTTTAAGACCCCAAGTCCATTGGAATGGATCCTCCAGCATTCAAAATCCGTTTTTCGAGCTGCAGTAA

mRNA sequence

ATGGCACGCGTTCTTCGGCTGTTGAGGAACTGCAACCTCGACGACGTTCGACCACACAGAGTGCGAAGCGTGCGGTGGCAGCCACTCCCTAGGCGTATTGGTCTGCTGGAGGAAACTTTGTTGGGGGAAATTCTTGGTGCCGTAGTTCTGGCTGAAGGTCTGATTGAGCCAGCTCTTGAATCCAAGCCTATGGCCAAACTGTCATCTATGAACCGAACAGCCTACTTTGATCTATTTGCAAAGCGGGTAAGTGATAAGATACAATCTCAATCTGCAGTGGTCAAAAGCTTTAGTGACCAAAAAGGAATGTGGAATAAACAAACTGCAAAACCATGCCTTTTAAGACCCCAAGTCCATTGGAATGGATCCTCCAGCATTCAAAATCCGTTTTTCGAGCTGCAGTAA

Coding sequence (CDS)

ATGGCACGCGTTCTTCGGCTGTTGAGGAACTGCAACCTCGACGACGTTCGACCACACAGAGTGCGAAGCGTGCGGTGGCAGCCACTCCCTAGGCGTATTGGTCTGCTGGAGGAAACTTTGTTGGGGGAAATTCTTGGTGCCGTAGTTCTGGCTGAAGGTCTGATTGAGCCAGCTCTTGAATCCAAGCCTATGGCCAAACTGTCATCTATGAACCGAACAGCCTACTTTGATCTATTTGCAAAGCGGGTAAGTGATAAGATACAATCTCAATCTGCAGTGGTCAAAAGCTTTAGTGACCAAAAAGGAATGTGGAATAAACAAACTGCAAAACCATGCCTTTTAAGACCCCAAGTCCATTGGAATGGATCCTCCAGCATTCAAAATCCGTTTTTCGAGCTGCAGTAA
Homology
[Close]
BLAST of CmoCh06G014550 vs. TrEMBL
Match: A0A0A0L539_CUCSA (Inosine-uridine preferring nucleoside hydrolase OS=Cucumis sativus GN=Csa_3G150840 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.3e-07
Identity = 42/100 (42.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 38  ETLLGEILGAVVLAE-GLIEPALE------------------------SKPMAKLSSMNR 97
           +T LGEILGAVVLAE  L++P  +                         K +  L ++N+
Sbjct: 791 DTFLGEILGAVVLAEEDLVKPVFQFKHVKILADGVESQDGQTVIYEKGGKLIQVLQNLNQ 850

Query: 98  TAYFDLFAKRVSDKIQSQSAVVKSFSDQKGMWNKQTAKPC 113
           TAYFDLFA R+SD    QSAV+KSF+DQK +W K     C
Sbjct: 851 TAYFDLFANRLSD--TKQSAVIKSFNDQKRIWYKLKNLTC 888

[Close]
BLAST of CmoCh06G014550 vs. NCBI nr
Match: gi|659076598|ref|XP_008438766.1| (PREDICTED: uncharacterized protein LOC103483780 isoform X1 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 5.7e-09
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1 

Query: 38  ETLLGEILGAVVLAEGLIEPALESKPMAKLS------------------------SMNRT 97
           +T LGEILGAVVLAE L++P  + KP+  L+                        ++N+T
Sbjct: 791 DTFLGEILGAVVLAEDLVKPVFQFKPVKILADGDESQDGQTVIYEKGGKLIQILQNLNQT 850

Query: 98  AYFDLFAKRVSDKIQSQSAVVKSFSDQKGMWNKQTAKPC 113
           AYFDLFA R+SD    QSAV+KSF+DQK +W K     C
Sbjct: 851 AYFDLFANRLSD--TKQSAVIKSFNDQKRIWYKLQNLTC 887

[Close]
BLAST of CmoCh06G014550 vs. NCBI nr
Match: gi|659076600|ref|XP_008438767.1| (PREDICTED: uncharacterized protein LOC103483780 isoform X2 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 5.7e-09
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1 

Query: 38  ETLLGEILGAVVLAEGLIEPALESKPMAKLS------------------------SMNRT 97
           +T LGEILGAVVLAE L++P  + KP+  L+                        ++N+T
Sbjct: 702 DTFLGEILGAVVLAEDLVKPVFQFKPVKILADGDESQDGQTVIYEKGGKLIQILQNLNQT 761

Query: 98  AYFDLFAKRVSDKIQSQSAVVKSFSDQKGMWNKQTAKPC 113
           AYFDLFA R+SD    QSAV+KSF+DQK +W K     C
Sbjct: 762 AYFDLFANRLSD--TKQSAVIKSFNDQKRIWYKLQNLTC 798

[Close]
BLAST of CmoCh06G014550 vs. NCBI nr
Match: gi|778678683|ref|XP_011651011.1| (PREDICTED: uncharacterized protein LOC101216049 isoform X2 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 42/100 (42.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 38  ETLLGEILGAVVLAE-GLIEPALE------------------------SKPMAKLSSMNR 97
           +T LGEILGAVVLAE  L++P  +                         K +  L ++N+
Sbjct: 702 DTFLGEILGAVVLAEEDLVKPVFQFKHVKILADGVESQDGQTVIYEKGGKLIQVLQNLNQ 761

Query: 98  TAYFDLFAKRVSDKIQSQSAVVKSFSDQKGMWNKQTAKPC 113
           TAYFDLFA R+SD    QSAV+KSF+DQK +W K     C
Sbjct: 762 TAYFDLFANRLSD--TKQSAVIKSFNDQKRIWYKLKNLTC 799

[Close]
BLAST of CmoCh06G014550 vs. NCBI nr
Match: gi|449432781|ref|XP_004134177.1| (PREDICTED: uncharacterized protein LOC101216049 isoform X1 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 42/100 (42.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 38  ETLLGEILGAVVLAE-GLIEPALE------------------------SKPMAKLSSMNR 97
           +T LGEILGAVVLAE  L++P  +                         K +  L ++N+
Sbjct: 791 DTFLGEILGAVVLAEEDLVKPVFQFKHVKILADGVESQDGQTVIYEKGGKLIQVLQNLNQ 850

Query: 98  TAYFDLFAKRVSDKIQSQSAVVKSFSDQKGMWNKQTAKPC 113
           TAYFDLFA R+SD    QSAV+KSF+DQK +W K     C
Sbjct: 851 TAYFDLFANRLSD--TKQSAVIKSFNDQKRIWYKLKNLTC 888

The following BLAST results are available for this feature:
BLAST of CmoCh06G014550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh06G014550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L539_CUCSA8.3e-0742.00Inosine-uridine preferring nucleoside hydrolase OS=Cucumis sativus GN=Csa_3G1508... [more]
BLAST of CmoCh06G014550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh06G014550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076598|ref|XP_008438766.1|5.7e-0943.43PREDICTED: uncharacterized protein LOC103483780 isoform X1 [Cucumis melo][more]
gi|659076600|ref|XP_008438767.1|5.7e-0943.43PREDICTED: uncharacterized protein LOC103483780 isoform X2 [Cucumis melo][more]
gi|778678683|ref|XP_011651011.1|1.2e-0642.00PREDICTED: uncharacterized protein LOC101216049 isoform X2 [Cucumis sativus][more]
gi|449432781|ref|XP_004134177.1|1.2e-0642.00PREDICTED: uncharacterized protein LOC101216049 isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006144 purine nucleobase metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004854 xanthine dehydrogenase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G014550.1CmoCh06G014550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G014550CmaCh14G016530Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G014550Cla021692Watermelon (97103) v1cmowmB793
CmoCh06G014550MELO3C006594Melon (DHL92) v3.5.1cmomeB755
CmoCh06G014550ClCG05G005670Watermelon (Charleston Gray)cmowcgB743
CmoCh06G014550Bhi01G000659Wax gourdcmowgoB1005
CmoCh06G014550Carg17380Silver-seed gourdcarcmoB0825
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh06G014550CmoCh14G016970Cucurbita moschata (Rifu)cmocmoB224
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G014550Cucumber (Gy14) v2cgybcmoB401
CmoCh06G014550Cucumber (Gy14) v2cgybcmoB839
CmoCh06G014550Cucumber (Gy14) v2cgybcmoB840
CmoCh06G014550Melon (DHL92) v3.6.1cmomedB840
CmoCh06G014550Melon (DHL92) v3.6.1cmomedB857
CmoCh06G014550Silver-seed gourdcarcmoB0102
CmoCh06G014550Silver-seed gourdcarcmoB0448
CmoCh06G014550Silver-seed gourdcarcmoB1125
CmoCh06G014550Cucumber (Chinese Long) v3cmocucB0953
CmoCh06G014550Cucumber (Chinese Long) v3cmocucB0986
CmoCh06G014550Cucumber (Chinese Long) v3cmocucB0984
CmoCh06G014550Watermelon (97103) v2cmowmbB833
CmoCh06G014550Watermelon (97103) v2cmowmbB837
CmoCh06G014550Wax gourdcmowgoB1018
CmoCh06G014550Wax gourdcmowgoB0999
CmoCh06G014550Cucurbita moschata (Rifu)cmocmoB308
CmoCh06G014550Cucurbita moschata (Rifu)cmocmoB484
CmoCh06G014550Cucurbita moschata (Rifu)cmocmoB485
CmoCh06G014550Cucumber (Gy14) v1cgycmoB0718
CmoCh06G014550Cucurbita maxima (Rimu)cmacmoB362
CmoCh06G014550Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G014550Cucurbita maxima (Rimu)cmacmoB910
CmoCh06G014550Wild cucumber (PI 183967)cmocpiB814
CmoCh06G014550Cucumber (Chinese Long) v2cmocuB806
CmoCh06G014550Melon (DHL92) v3.5.1cmomeB738
CmoCh06G014550Watermelon (Charleston Gray)cmowcgB746
CmoCh06G014550Watermelon (97103) v1cmowmB802
CmoCh06G014550Cucurbita pepo (Zucchini)cmocpeB765
CmoCh06G014550Cucurbita pepo (Zucchini)cmocpeB777
CmoCh06G014550Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G014550Cucurbita pepo (Zucchini)cmocpeB796
CmoCh06G014550Bottle gourd (USVL1VR-Ls)cmolsiB733
CmoCh06G014550Bottle gourd (USVL1VR-Ls)cmolsiB752