CmoCh06G014320 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G014320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNEDD8-activating enzyme E1 catalytic subunit
LocationCmo_Chr06 : 10386789 .. 10387136 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGGGACCTCGACAAGCTCCTCCATAGGCCCGGTAACCTCATTGGCGCCAATTTTGAGCCCGGTTCTCGAGTGGGTCCTTCCTCTTCTTCTCTCCGACATTTTTTCACCTTGTGTTCAGTACATGGTCTGCAATCGTCTTGCGCCTTAAGTTGATTTGAGTTACAGTTGAGGGATGATCTTCAACAGTACGTTCAAGTGTTGGTCATTGGAGATGGAGCGTCGGAAGATTTGGCTGTGTCGGGTTTTCGGAATCTGGAAGTCATTGACATGGATCGCATCGAAGTTACAAATCTCAATCCTCAGTTTCTCTTCAGGTTCCAACGATTTTCACGGTTCTATGCGTAG

mRNA sequence

GAAAGGGACCTCGACAAGCTCCTCCATAGGCCCGGTAACCTCATTGGCGCCAATTTTGAGCCCGGTTCTCGATTGAGGGATGATCTTCAACAGTACGTTCAAGTGTTGGTCATTGGAGATGGAGCGTCGGAAGATTTGGCTGTGTCGGGTTTTCGGAATCTGGAAGTCATTGACATGGATCGCATCGAAGTTACAAATCTCAATCCTCAGTTTCTCTTCAGGTTCCAACGATTTTCACGGTTCTATGCGTAG

Coding sequence (CDS)

GAAAGGGACCTCGACAAGCTCCTCCATAGGCCCGGTAACCTCATTGGCGCCAATTTTGAGCCCGGTTCTCGATTGAGGGATGATCTTCAACAGTACGTTCAAGTGTTGGTCATTGGAGATGGAGCGTCGGAAGATTTGGCTGTGTCGGGTTTTCGGAATCTGGAAGTCATTGACATGGATCGCATCGAAGTTACAAATCTCAATCCTCAGTTTCTCTTCAGGTTCCAACGATTTTCACGGTTCTATGCGTAG
BLAST of CmoCh06G014320 vs. Swiss-Prot
Match: UBA3_ARATH (NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-21
Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGAS-----EDLAVSGFRNLEV 61
          RDLDKLL R GNL+   F PG  LRDD++ YV++LVIG G       +DLA+SGFRNLEV
Sbjct: 16 RDLDKLLLRHGNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEV 75

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 76 IDMDRIEVTNLNRQFLFRIE 95

BLAST of CmoCh06G014320 vs. Swiss-Prot
Match: UBA3_DICDI (NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-11
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1

Query: 3  DLDKLLHRPGNLIGANFEPGSR----LRDDLQQYVQVLVIGDGAS-----EDLAVSGFRN 62
          D++K++ R G     +FEP ++    + + LQ   +VLVIG G       ++LA+SGFRN
Sbjct: 16 DIEKIIKRTGPFASPSFEPDTKASPNIMNGLQNDFKVLVIGAGGLGCEILKNLALSGFRN 75

Query: 63 LEVIDMDRIEVTNLNPQFLFR 75
          ++VIDMD I+++NLN QFLFR
Sbjct: 76 IDVIDMDTIDISNLNRQFLFR 96

BLAST of CmoCh06G014320 vs. Swiss-Prot
Match: UBA3_HUMAN (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-09
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1

Query: 6   KLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGAS-----EDLAVSGFRNLEVIDMD 65
           K L R G     +FEP +     L    +VLVIG G       ++LA+SGFR + VIDMD
Sbjct: 43  KFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 102

Query: 66  RIEVTNLNPQFLFR 75
            I+V+NLN QFLFR
Sbjct: 103 TIDVSNLNRQFLFR 116

BLAST of CmoCh06G014320 vs. Swiss-Prot
Match: UBA3_MOUSE (NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-09
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1

Query: 6   KLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGAS-----EDLAVSGFRNLEVIDMD 65
           K L R G     +FEP +     L    +VLVIG G       ++LA+SGFR + VIDMD
Sbjct: 43  KFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 102

Query: 66  RIEVTNLNPQFLFR 75
            I+V+NLN QFLFR
Sbjct: 103 TIDVSNLNRQFLFR 116

BLAST of CmoCh06G014320 vs. Swiss-Prot
Match: UBA3_PONAB (NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-09
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1

Query: 6   KLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGAS-----EDLAVSGFRNLEVIDMD 65
           K L R G     +FEP +     L    +VLVIG G       ++LA+SGFR + VIDMD
Sbjct: 43  KFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 102

Query: 66  RIEVTNLNPQFLFR 75
            I+V+NLN QFLFR
Sbjct: 103 TIDVSNLNRQFLFR 116

BLAST of CmoCh06G014320 vs. TrEMBL
Match: A0A0A0L8U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149920 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-26
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNLIGANFEPGS+LRDDLQQYV+VLVIG G       +DLA+SGFRNLEV
Sbjct: 12 RDLDKLLLRPGNLIGANFEPGSQLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRNLEV 71

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 72 IDMDRIEVTNLNRQFLFRLE 91

BLAST of CmoCh06G014320 vs. TrEMBL
Match: W1PXY3_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00025p00060820 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGN++G NFEPG +LRDDLQ Y +VLV+G G       +DLA+SGFRNLEV
Sbjct: 14 RDLDKLLVRPGNIVGPNFEPGPQLRDDLQAYAKVLVVGAGGLGCELLKDLALSGFRNLEV 73

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEV+NLN QFLFR Q
Sbjct: 74 IDMDRIEVSNLNRQFLFRLQ 93

BLAST of CmoCh06G014320 vs. TrEMBL
Match: A0A061EL40_THECC (E1 C-terminal related 1 isoform 1 OS=Theobroma cacao GN=TCM_020541 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.7e-23
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNL+G +FEPG +LRDDLQ+Y +VLV+G G       +DLA+SGF+NLEV
Sbjct: 11 RDLDKLLLRPGNLVGPSFEPGVQLRDDLQEYAKVLVVGAGGLGCELLKDLALSGFKNLEV 70

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 71 IDMDRIEVTNLNRQFLFRLE 90

BLAST of CmoCh06G014320 vs. TrEMBL
Match: A0A061EMG3_THECC (E1 C-terminal related 1 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_020541 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.7e-23
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNL+G +FEPG +LRDDLQ+Y +VLV+G G       +DLA+SGF+NLEV
Sbjct: 11 RDLDKLLLRPGNLVGPSFEPGVQLRDDLQEYAKVLVVGAGGLGCELLKDLALSGFKNLEV 70

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 71 IDMDRIEVTNLNRQFLFRLE 90

BLAST of CmoCh06G014320 vs. TrEMBL
Match: I1MR79_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G016000 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNL+G  FEPG+ LRDDLQ + +VLV+G G       +DLA+SGFRNLEV
Sbjct: 9  RDLDKLLLRPGNLVGPRFEPGAELRDDLQAFAKVLVVGAGGLGCELLKDLALSGFRNLEV 68

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 69 IDMDRIEVTNLNRQFLFRLE 88

BLAST of CmoCh06G014320 vs. TAIR10
Match: AT5G19180.1 (AT5G19180.1 E1 C-terminal related 1)

HSP 1 Score: 103.6 bits (257), Expect = 6.0e-23
Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGAS-----EDLAVSGFRNLEV 61
          RDLDKLL R GNL+   F PG  LRDD++ YV++LVIG G       +DLA+SGFRNLEV
Sbjct: 16 RDLDKLLLRHGNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEV 75

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 76 IDMDRIEVTNLNRQFLFRIE 95

BLAST of CmoCh06G014320 vs. TAIR10
Match: AT2G21470.2 (AT2G21470.2 SUMO-activating enzyme 2)

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-06
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1

Query: 34 QVLVIGDGAS-----EDLAVSGFRNLEVIDMDRIEVTNLNPQFLFR 75
          +VL++G G       + LA+SGF ++ +IDMD IEV+NLN QFLFR
Sbjct: 14 KVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFR 59

BLAST of CmoCh06G014320 vs. NCBI nr
Match: gi|449432724|ref|XP_004134149.1| (PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 7.1e-26
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNLIGANFEPGS+LRDDLQQYV+VLVIG G       +DLA+SGFRNLEV
Sbjct: 12 RDLDKLLLRPGNLIGANFEPGSQLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRNLEV 71

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 72 IDMDRIEVTNLNRQFLFRLE 91

BLAST of CmoCh06G014320 vs. NCBI nr
Match: gi|659076491|ref|XP_008438709.1| (PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 7.1e-26
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNLIGANFEPGS+LRDDLQQYV+VLVIG G       +DLA+SGFRNLEV
Sbjct: 12 RDLDKLLLRPGNLIGANFEPGSQLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRNLEV 71

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 72 IDMDRIEVTNLNRQFLFRLE 91

BLAST of CmoCh06G014320 vs. NCBI nr
Match: gi|586747014|ref|XP_006850744.1| (PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Amborella trichopoda])

HSP 1 Score: 115.2 bits (287), Expect = 5.6e-23
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGN++G NFEPG +LRDDLQ Y +VLV+G G       +DLA+SGFRNLEV
Sbjct: 14 RDLDKLLVRPGNIVGPNFEPGPQLRDDLQAYAKVLVVGAGGLGCELLKDLALSGFRNLEV 73

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEV+NLN QFLFR Q
Sbjct: 74 IDMDRIEVSNLNRQFLFRLQ 93

BLAST of CmoCh06G014320 vs. NCBI nr
Match: gi|470121753|ref|XP_004296925.1| (PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Fragaria vesca subsp. vesca])

HSP 1 Score: 115.2 bits (287), Expect = 5.6e-23
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNLIG+NFEPG  LRDDL++YV+VLV+G G       +DLA+SGFR LEV
Sbjct: 12 RDLDKLLLRPGNLIGSNFEPGPGLRDDLKEYVRVLVVGAGGLGCELLKDLALSGFRELEV 71

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEVTNLN QFLFR +
Sbjct: 72 IDMDRIEVTNLNRQFLFRLE 91

BLAST of CmoCh06G014320 vs. NCBI nr
Match: gi|720000089|ref|XP_010255917.1| (PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nelumbo nucifera])

HSP 1 Score: 114.4 bits (285), Expect = 9.6e-23
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 2  RDLDKLLHRPGNLIGANFEPGSRLRDDLQQYVQVLVIGDGA-----SEDLAVSGFRNLEV 61
          RDLDKLL RPGNL+G NF+PG+ LRDDLQ+Y +VLV+G G       +DLA+ GFRNLEV
Sbjct: 13 RDLDKLLLRPGNLVGPNFDPGTELRDDLQEYAKVLVVGAGGLGCELLKDLALMGFRNLEV 72

Query: 62 IDMDRIEVTNLNPQFLFRFQ 77
          IDMDRIEV+NLN QFLFR Q
Sbjct: 73 IDMDRIEVSNLNRQFLFRLQ 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
UBA3_ARATH1.1e-2166.25NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=... [more]
UBA3_DICDI1.7e-1144.44NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3... [more]
UBA3_HUMAN2.7e-0947.30NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2[more]
UBA3_MOUSE2.7e-0947.30NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=1 SV=2[more]
UBA3_PONAB2.7e-0947.30NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0L8U2_CUCSA5.0e-2680.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149920 PE=4 SV=1[more]
W1PXY3_AMBTC3.9e-2371.25Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00025p00060820 PE=4 SV=... [more]
A0A061EL40_THECC8.7e-2370.00E1 C-terminal related 1 isoform 1 OS=Theobroma cacao GN=TCM_020541 PE=4 SV=1[more]
A0A061EMG3_THECC8.7e-2370.00E1 C-terminal related 1 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_020541 PE... [more]
I1MR79_SOYBN1.9e-2270.00Uncharacterized protein OS=Glycine max GN=GLYMA_17G016000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G19180.16.0e-2366.25 E1 C-terminal related 1[more]
AT2G21470.25.1e-0652.17 SUMO-activating enzyme 2[more]
Match NameE-valueIdentityDescription
gi|449432724|ref|XP_004134149.1|7.1e-2680.00PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Cucumis sativus][more]
gi|659076491|ref|XP_008438709.1|7.1e-2680.00PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Cucumis melo][more]
gi|586747014|ref|XP_006850744.1|5.6e-2371.25PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Amborella trichopoda][more]
gi|470121753|ref|XP_004296925.1|5.6e-2372.50PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Fragaria vesca subsp. v... [more]
gi|720000089|ref|XP_010255917.1|9.6e-2370.00PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000594ThiF_NAD_FAD-bd
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0019781NEDD8 activating enzyme activity
GO:0008641small protein activating enzyme activity
Vocabulary: Biological Process
TermDefinition
GO:0045116protein neddylation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045116 protein neddylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016881 acid-amino acid ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0019781 NEDD8 activating enzyme activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0008641 small protein activating enzyme activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G014320.1CmoCh06G014320.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000594THIF-type NAD/FAD binding foldPFAMPF00899ThiFcoord: 38..77
score: 4.8
IPR000594THIF-type NAD/FAD binding foldunknownSSF69572Activating enzymes of the ubiquitin-like proteinscoord: 35..76
score: 8.37
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 38..76
score: 1.
NoneNo IPR availablePANTHERPTHR10953UBIQUITIN-ACTIVATING ENZYME E1coord: 2..74
score: 4.3

The following gene(s) are paralogous to this gene:

None