CmoCh06G013770 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G013770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA recombination protein
Location	Cmo_Chr06 : 10144021 .. 10144893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTCAGAGCGGAAGAACAGAGCCAGCAACTTCAGATTGTAGAGCGCGAAGATATTGAGGATGAAGACGACTTGTTCGAAGCGATCGATAAACGTAAGTTTCAGAGCTTACAACTTATAATTAAGTTATGGTTTCGCTATTCAAAGTATTTCCTCGCTGACGCTTGTTTTGTTAAGTTCAAACAAAACTTGATTTCATGACGTTCTATCTTAGTGATTTGCTTGTTGACCTCGAGGTTGATTTGAAAAACTCCAATGCTAATCGATTTTCTTTCTCCGAAGAGATATGAGATCGCCGATACGGCATCACTGAATCTCATTCGATTGATTCATCAGCAATTTAATTCAGTGATCCTTTCAGTTCGCCATAGCCTTGCATCCAGTTTAGCAAGGTTTATTTTTTGTAGTGGTCTATTTTCTCAAGGCATGCAATTCGACCAGAGTTTTGCTAAAGTCGAGGAGAAGATACAACTAGTTTTAGCCATCAACTAACTATCAAGCTGTTCTGTTGTTCCACTACATCTGATAGAGTTCCTATGGCATTTTCTGTGCAGTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGATGCAGGGATATACACTTGCAATGGTTTGATGATGCACACGAAGAAGGTAGAGCAATTCTTACATCCGATTCTATATAATCTGAATTTGATGTAATTATAGTGACCAAGGGTTTTGTATCTTAGCACTTGACAGGGATAAAAGGTTTATCCGAAGCGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGGTCAGTGACTCAATCACCACTTCTGTTATCCACGATGCGTGCAATGGTTTACACAATGATGTCATAATGCGATGA

mRNA sequence

ATGTTGCTCAGAGCGGAAGAACAGAGCCAGCAACTTCAGATTGTAGAGCGCGAAGATATTGAGGATGAAGACGACTTGTTCGAAGCGATCGATAAACTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGATGCAGGGATATACACTTGCAATGGTTTGATGATGCACACGAAGAAGCACTTGACAGGGATAAAAGGTTTATCCGAAGCGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGGTCAGTGACTCAATCACCACTTCTGTTATCCACGATGCGTGCAATGGTTTACACAATGATGTCATAATGCGATGA

Coding sequence (CDS)

ATGTTGCTCAGAGCGGAAGAACAGAGCCAGCAACTTCAGATTGTAGAGCGCGAAGATATTGAGGATGAAGACGACTTGTTCGAAGCGATCGATAAACTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGATGCAGGGATATACACTTGCAATGGTTTGATGATGCACACGAAGAAGCACTTGACAGGGATAAAAGGTTTATCCGAAGCGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGGTCAGTGACTCAATCACCACTTCTGTTATCCACGATGCGTGCAATGGTTTACACAATGATGTCATAATGCGATGA

Homology

[Close]

BLAST of CmoCh06G013770 vs. Swiss-Prot
Match: DMC1_SOYBN (Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-34
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L++EE S QLQ+VEREDI+D++DLFEAIDKL + GINAGDVKKLQDAGIYTCNGLMMHTK
Sbjct: 5  LKSEESSGQLQLVEREDIDDDEDLFEAIDKLIAQGINAGDVKKLQDAGIYTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          K+LTGIKGLSEAKVDKICEAAEKLV    IT S
Sbjct: 65 KNLTGIKGLSEAKVDKICEAAEKLVNFGYITGS 97

[Close]

BLAST of CmoCh06G013770 vs. Swiss-Prot
Match: DMC1_ARATH (Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana GN=DMC1 PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-29
Identity = 66/85 (77.65%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEE SQ +Q+VERE+ ++++DLFE IDKL + GINAGDVKKLQ+AGI+TCNGLMMHTK
Sbjct: 5  LKAEETSQ-MQLVEREENDEDEDLFEMIDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLV 88
          K+LTGIKGLSEAKVDKICEAAEK+V
Sbjct: 65 KNLTGIKGLSEAKVDKICEAAEKIV 88

[Close]

BLAST of CmoCh06G013770 vs. Swiss-Prot
Match: DMC1_LILLO (Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum GN=LIM15 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.0e-29
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 4   RAEEQSQQLQIVEREDIEDED-DLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 63
           R  E   QLQ+++R++ E+E+ D FE+IDKL S GINAGDVKKLQDAGIYTCNGLMMHTK
Sbjct: 9   RRFESPGQLQLLDRQEAEEEEEDCFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTK 68

Query: 64  KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
           K+LTGIKGLSEAKVDKICEAAEKLV    IT S
Sbjct: 69  KNLTGIKGLSEAKVDKICEAAEKLVNVGYITGS 101

[Close]

BLAST of CmoCh06G013770 vs. Swiss-Prot
Match: DMC1_HUMAN (Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-13
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 21 EDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKIC 80
          ++E+ LF+ ID L  HGIN  D+KKL+  GI T  G+ M T++ L  +KGLSEAKVDKI 
Sbjct: 15 DEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 74

Query: 81 EAAEKLVVSDSIT 94
          EAA KL+    +T
Sbjct: 75 EAANKLIEPGFLT 87

[Close]

BLAST of CmoCh06G013770 vs. Swiss-Prot
Match: DMC1_MOUSE (Meiotic recombination protein DMC1/LIM15 homolog OS=Mus musculus GN=Dmc1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-13
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 13 QIVERED--IEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKG 72
          Q+V+ E    +DE+ LF+ ID L  HGIN  D+KKL+  GI T  G+ M T++ L  +KG
Sbjct: 5  QVVQEESGFQDDEESLFQDIDLLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNVKG 64

Query: 73 LSEAKVDKICEAAEKLVVSDSIT 94
          LSEAKV+KI EAA KL+    +T
Sbjct: 65 LSEAKVEKIKEAANKLIEPGFLT 87

[Close]

BLAST of CmoCh06G013770 vs. TrEMBL
Match: A0A0A0L5D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145750 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-39
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1   MLLRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMH 60
           MLLRAEEQSQQLQ+VEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMH
Sbjct: 98  MLLRAEEQSQQLQLVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMH 157

Query: 61  TKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
           TKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Sbjct: 158 TKKHLTGIKGLSEAKVDKICEAAEKLVNFGYITGS 192

[Close]

BLAST of CmoCh06G013770 vs. TrEMBL
Match: A0A0K9RP82_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044610 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEEQSQQLQ+VEREDIEDE+DLFEAIDKL +HGINAGDVKKLQDAGIYTCNGLMM TK
Sbjct: 7  LKAEEQSQQLQLVEREDIEDEEDLFEAIDKLIAHGINAGDVKKLQDAGIYTCNGLMMQTK 66

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          K+LTGIKGLSEAKVDKICEAAEK+V    IT S
Sbjct: 67 KNLTGIKGLSEAKVDKICEAAEKIVNYGYITGS 99

[Close]

BLAST of CmoCh06G013770 vs. TrEMBL
Match: A0A022RNV5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009723mg PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 1


Query: 1  MLLRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMH 60
          M+ RAEEQS QLQ+VERE++EDE+DLFEAIDKLT+HGINAGDVKKLQDAGIYTCNGLMMH
Sbjct: 1  MIGRAEEQS-QLQLVEREEVEDEEDLFEAIDKLTAHGINAGDVKKLQDAGIYTCNGLMMH 60

Query: 61 TKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          TKK LTGIKGLSEAKVDKICEA EK+V    IT S
Sbjct: 61 TKKSLTGIKGLSEAKVDKICEAVEKIVNFGYITGS 94

[Close]

BLAST of CmoCh06G013770 vs. TrEMBL
Match: A0A067GGE2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047388mg PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-33
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEEQS QLQ+VEREDI+DE+DLFEAIDKL S GINAGDVKKLQDAGIYTCNGLMMHTK
Sbjct: 5  LKAEEQS-QLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          KHLTGIKGLSEAKV+KICEAAEK+V    IT S
Sbjct: 65 KHLTGIKGLSEAKVEKICEAAEKIVNFGYITGS 96

[Close]

BLAST of CmoCh06G013770 vs. TrEMBL
Match: V4S3D1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006682mg PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-33
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEEQS QLQ+VEREDI+DE+DLFEAIDKL S GINAGDVKKLQDAGIYTCNGLMMHTK
Sbjct: 5  LKAEEQS-QLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          KHLTGIKGLSEAKV+KICEAAEK+V    IT S
Sbjct: 65 KHLTGIKGLSEAKVEKICEAAEKIVNFGYITGS 96

[Close]

BLAST of CmoCh06G013770 vs. TAIR10
Match: AT3G22880.1 (AT3G22880.1 DNA repair (Rad51) family protein)

HSP 1 Score: 130.6 bits (327), Expect = 6.1e-31
Identity = 66/85 (77.65%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEE SQ +Q+VERE+ ++++DLFE IDKL + GINAGDVKKLQ+AGI+TCNGLMMHTK
Sbjct: 5  LKAEETSQ-MQLVEREENDEDEDLFEMIDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLV 88
          K+LTGIKGLSEAKVDKICEAAEK+V
Sbjct: 65 KNLTGIKGLSEAKVDKICEAAEKIV 88

[Close]

BLAST of CmoCh06G013770 vs. TAIR10
Match: AT5G20850.1 (AT5G20850.1 RAS associated with diabetes protein 51)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 7  EQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLT 66
          EQ +    V+++D E+       +++L + GI + DVKKL+DAG+ T  G+    +K L 
Sbjct: 5  EQRRNQNAVQQQDDEETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKDLL 64

Query: 67 GIKGLSEAKVDKICEAAEKLVVSDSITTSVIH 99
           IKG+S+AKVDKI EAA KLV     + S +H
Sbjct: 65 QIKGISDAKVDKIVEAASKLVPLGFTSASQLH 96

[Close]

BLAST of CmoCh06G013770 vs. NCBI nr
Match: gi|700201805|gb|KGN56938.1| (hypothetical protein Csa_3G145750 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-39
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1   MLLRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMH 60
           MLLRAEEQSQQLQ+VEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMH
Sbjct: 98  MLLRAEEQSQQLQLVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMH 157

Query: 61  TKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
           TKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Sbjct: 158 TKKHLTGIKGLSEAKVDKICEAAEKLVNFGYITGS 192

[Close]

BLAST of CmoCh06G013770 vs. NCBI nr
Match: gi|449432658|ref|XP_004134116.1| (PREDICTED: meiotic recombination protein DMC1 homolog [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.9e-38
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEEQSQQLQ+VEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK
Sbjct: 5  LKAEEQSQQLQLVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          KHLTGIKGLSEAKVDKICEAAEKLV    IT S
Sbjct: 65 KHLTGIKGLSEAKVDKICEAAEKLVNFGYITGS 97

[Close]

BLAST of CmoCh06G013770 vs. NCBI nr
Match: gi|659076315|ref|XP_008438613.1| (PREDICTED: meiotic recombination protein DMC1 homolog [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEEQSQQLQ+VEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK
Sbjct: 5  LKAEEQSQQLQLVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          KHLTGIKGLSEAKVDKICEAA+KLV    IT S
Sbjct: 65 KHLTGIKGLSEAKVDKICEAADKLVNFGYITGS 97

[Close]

BLAST of CmoCh06G013770 vs. NCBI nr
Match: gi|902228855|gb|KNA21288.1| (hypothetical protein SOVF_044610 [Spinacia oleracea])

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEEQSQQLQ+VEREDIEDE+DLFEAIDKL +HGINAGDVKKLQDAGIYTCNGLMM TK
Sbjct: 7  LKAEEQSQQLQLVEREDIEDEEDLFEAIDKLIAHGINAGDVKKLQDAGIYTCNGLMMQTK 66

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          K+LTGIKGLSEAKVDKICEAAEK+V    IT S
Sbjct: 67 KNLTGIKGLSEAKVDKICEAAEKIVNYGYITGS 99

[Close]

BLAST of CmoCh06G013770 vs. NCBI nr
Match: gi|694392947|ref|XP_009371932.1| (PREDICTED: meiotic recombination protein DMC1 homolog [Pyrus x bretschneideri])

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 3  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTK 62
          L+AEEQSQQLQ+VEREDIEDE+DLFEAIDKL + GINAGD+KKLQDAGIYTCNGLMMHTK
Sbjct: 5  LKAEEQSQQLQLVEREDIEDEEDLFEAIDKLIAQGINAGDIKKLQDAGIYTCNGLMMHTK 64

Query: 63 KHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS 96
          K+LTGIKGLSEAKVDKICEAAEK+V    IT S
Sbjct: 65 KNLTGIKGLSEAKVDKICEAAEKIVNFGYITGS 97

The following BLAST results are available for this feature:

BLAST of CmoCh06G013770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DMC1_SOYBN	1.5e-34	81.72	Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1	[more]
DMC1_ARATH	1.1e-29	77.65	Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana GN=DMC1 PE=1 ...	[more]
DMC1_LILLO	7.0e-29	74.19	Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum GN=LIM15 PE=2 S...	[more]
DMC1_HUMAN	1.4e-13	52.05	Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV...	[more]
DMC1_MOUSE	2.4e-13	49.40	Meiotic recombination protein DMC1/LIM15 homolog OS=Mus musculus GN=Dmc1 PE=1 SV...	[more]

BLAST of CmoCh06G013770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D5_CUCSA	1.4e-39	93.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145750 PE=3 SV=1	[more]
A0A0K9RP82_SPIOL	1.0e-34	86.02	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044610 PE=3 SV=1	[more]
A0A022RNV5_ERYGU	1.9e-33	83.16	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009723mg PE=3 SV=1	[more]
A0A067GGE2_CITSI	3.3e-33	84.95	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047388mg PE=3 SV=1	[more]
V4S3D1_9ROSI	3.3e-33	84.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006682mg PE=3 SV=1	[more]

BLAST of CmoCh06G013770 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22880.1	6.1e-31	77.65	DNA repair (Rad51) family protein	[more]
AT5G20850.1	2.0e-10	41.30	RAS associated with diabetes protein 51	[more]

BLAST of CmoCh06G013770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201805\|gb\|KGN56938.1\|	2.0e-39	93.68	hypothetical protein Csa_3G145750 [Cucumis sativus]	[more]
gi\|449432658\|ref\|XP_004134116.1\|	4.9e-38	92.47	PREDICTED: meiotic recombination protein DMC1 homolog [Cucumis sativus]	[more]
gi\|659076315\|ref\|XP_008438613.1\|	1.1e-37	91.40	PREDICTED: meiotic recombination protein DMC1 homolog [Cucumis melo]	[more]
gi\|902228855\|gb\|KNA21288.1\|	1.5e-34	86.02	hypothetical protein SOVF_044610 [Spinacia oleracea]	[more]
gi\|694392947\|ref\|XP_009371932.1\|	1.9e-34	84.95	PREDICTED: meiotic recombination protein DMC1 homolog [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010995	DNA_repair_Rad51/TF_NusA_a-hlx

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051026	chiasma assembly
biological_process	GO:0006281	DNA repair
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0010212	response to ionizing radiation
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G013770.1	CmoCh06G013770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010995	DNA repair Rad51/transcription factor NusA, alpha-helical	unknown	SSF47794	Rad51 N-terminal domain-like	coord: 22..87 score: 6.12
None	No IPR available	GENE3D	G3DSA:1.10.150.20		coord: 9..87 score: 2.3
None	No IPR available	PANTHER	PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	coord: 26..93 score: 2.6
None	No IPR available	PANTHER	PTHR22942:SF30	MEIOTIC RECOMBINATION PROTEIN DMC1/LIM15 HOMOLOG	coord: 26..93 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G013770	Cucsa.254660	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G013770	CmaCh06G013660	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G013770	Cla021587	Watermelon (97103) v1	cmowmB793
CmoCh06G013770	Csa3G145750	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G013770	ClCG05G004820	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G013770	CSPI03G12730	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G013770	Lsi05G016430	Bottle gourd (USVL1VR-Ls)	cmolsiB757
CmoCh06G013770	Cp4.1LG03g10450	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G013770	Cp4.1LG08g03870	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G013770	MELO3C006496.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G013770	CsaV3_3G012860	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G013770	Cla97C05G085910	Watermelon (97103) v2	cmowmbB833
CmoCh06G013770	Bhi01G000547	Wax gourd	cmowgoB1005
CmoCh06G013770	CsGy3G012880	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G013770	Carg06176	Silver-seed gourd	carcmoB1288

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G013770	CmoCh14G017890	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G013770	Cucumber (Chinese Long) v3	cmocucB0952
CmoCh06G013770	Watermelon (97103) v2	cmowmbB837
CmoCh06G013770	Watermelon (97103) v2	cmowmbB844
CmoCh06G013770	Wax gourd	cmowgoB1019
CmoCh06G013770	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh06G013770	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh06G013770	Cucurbita moschata (Rifu)	cmocmoB439
CmoCh06G013770	Cucumber (Gy14) v1	cgycmoB1074
CmoCh06G013770	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G013770	Cucurbita maxima (Rimu)	cmacmoB362
CmoCh06G013770	Cucurbita maxima (Rimu)	cmacmoB622
CmoCh06G013770	Cucurbita maxima (Rimu)	cmacmoB910
CmoCh06G013770	Wild cucumber (PI 183967)	cmocpiB812
CmoCh06G013770	Cucumber (Chinese Long) v2	cmocuB805
CmoCh06G013770	Melon (DHL92) v3.5.1	cmomeB753
CmoCh06G013770	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G013770	Watermelon (Charleston Gray)	cmowcgB746
CmoCh06G013770	Watermelon (97103) v1	cmowmB802
CmoCh06G013770	Cucurbita pepo (Zucchini)	cmocpeB765
CmoCh06G013770	Cucurbita pepo (Zucchini)	cmocpeB777
CmoCh06G013770	Cucurbita pepo (Zucchini)	cmocpeB791
CmoCh06G013770	Bottle gourd (USVL1VR-Ls)	cmolsiB733
CmoCh06G013770	Bottle gourd (USVL1VR-Ls)	cmolsiB762
CmoCh06G013770	Cucumber (Gy14) v2	cgybcmoB247
CmoCh06G013770	Melon (DHL92) v3.6.1	cmomedB855
CmoCh06G013770	Silver-seed gourd	carcmoB0322
CmoCh06G013770	Silver-seed gourd	carcmoB0448
CmoCh06G013770	Silver-seed gourd	carcmoB1058