CmoCh06G010830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G010830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr06 : 8359056 .. 8360874 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAAAAAAAAAAGAAAGAGAGAGGAAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAGTAACCTCAGTGCAGTTGCTGAGTAAATATCGGGTTAGGGTTTAAGAAAACGGTGACGTGCGGCAAATCGAGGAAATTTCCGGCGGCCGGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGTAACTTTTAGTGTTAAATTAATTGCTCAAATCATTTGTTTGTTTCAATTGATTCACTTTTTCGTGGTTCTTATGCTAATGTTTTTCCATGGGCGGATTGATTAGGGGAGAAACAGGAAAAAGAAAAGGCGGCGAAAAAGCTCCAAGCAAAGAAGAATAAGATGAAGGTATCGCTCTCTCTCTTTATCTCTGTATTGAATCGAGAAAAGTGGAGTTTTCTGTTTTGCTGATTTAAAAAGAAATTGAGAGTTATGGAGAGAGATGGATTGTTGTCTCTGTTTTGATTTTTCACTTGGTAATTTGGAAATTTGCTCATTCGAGTAATGTTCTAGTTTTCACACATTCTGATCACAAAACTCTCAAGAGATGCGTTCATTAGGATGAATAATGGAGAGAAAAGTATAATGGCTAGTGGCTGTGAGGCCCTAGTAAACTGTAGAGGACACCAAAGGCCTCTGCTCTTCCATCTCTTGGATAAATAGAGAGGGAAGGCAGAACTTGTTTAGGTTTTTCCGGTGTCCGAGTTTGCCCCACAGATATATTAGAAATGATACCTTGGGCGGAGCTAAAGCTAAGCAAGGGCCTCTACTCTTCCACCCCTTGGATAGATGGATAGATGGAGAGGGAAGGCAGAGCTTGTTTTGGTTTTTCCAATTTTCGAGCTTGCAGAAACGAAGGTTGAAGCATCACTAGAGACATATGCTGCATATCTTCCTGCAGCCGCTTCAGTCATTGCTGTTGATGGAGCAAATTAAGCACTTGAAGTTGACCGATAGTGATGCTGGTAGATCTGCTACCTACGCCTTTGCTTGCCTTGTCTGCTAATGCCTATAGCTTTCCCTCTTTGCCGGGTGGTATTGCTCTCTAAAAAGGCAGGTCATGGATAGTTGACGACGATGGACCTGAGGAGGAGCACTTTACTTGCCCCACAAATATATTAGAAATGATACCTTGGGGCGGAGCTAAAGCTATGCAAATAGTTTCTGCTCCAAGAATACATCACTCTGTTGGTGGTAGTAAGAGATGTGAATCTGTCTTCCCACTGTGTGATTTTTTGAGCAATTGGCCAACTGGATGAATATCAAATTTCGTTTGCCTTTCTTGAACATGTCTGTGTATATTAATACCATTCGAAAATGTCATTGTTTTCGTTTAATTATGTGCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAGGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGACGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATACTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTCTCTCTTGATTTCTGATCTCTTTATTGCCTGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTGTTCTTTTAAGTTCGATGTTTCAATCTTGTAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCC

mRNA sequence

GGGAAAAAAAAAAAGAAAGAGAGAGGAAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAGTAACCTCAGTGCAGTTGCTGAGTAAATATCGGGTTAGGGTTTAAGAAAACGGTGACGTGCGGCAAATCGAGGAAATTTCCGGCGGCCGGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAGGAAAAAGAAAAGGCGGCGAAAAAGCTCCAAGCAAAGAAGAATAAGATGAAGGTATCGCTCTCTCTCTTTATCTCTGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAGGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGACGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATACTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTCTCTCTTGATTTCTGATCTCTTTATTGCCTGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTGTTCTTTTAAGTTCGATGTTTCAATCTTGTAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCC

Coding sequence (CDS)

ATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAGGAAAAAGAAAAGGCGGCGAAAAAGCTCCAAGCAAAGAAGAATAAGATGAAGGTATCGCTCTCTCTCTTTATCTCTGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAGGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGA

Homology

[Close]

BLAST of CmoCh06G010830 vs. TrEMBL
Match: A0A0A0L493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.5e-24
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKV        DGSGKKKKGG 
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKV--------DGSGKKKKGGG 60

Query: 61 GFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          GFQVGKKKVKTKLTA AKAKA+QAMELDK
Sbjct: 61 GFQVGKKKVKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of CmoCh06G010830 vs. TrEMBL
Match: A0A059CHY1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-22
Identity = 70/89 (78.65%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 1   MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
           MSKKN+LSRRK Q+EFDLRREK EKEK  KKLQ KKNKMKV        DGSGKKKKG  
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKV--------DGSGKKKKGAG 101

Query: 61  GFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
           GFQVGK+KVKTKLTA AKAKAAQAMELDK
Sbjct: 102 GFQVGKRKVKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of CmoCh06G010830 vs. TrEMBL
Match: A0A061E133_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005350 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.0e-21
Identity = 70/90 (77.78%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGS-GKKKKGG 60
          MSKKNNL+RRK QHEFDL+REK EKEK AKKLQAKKNKMK        VDGS  KKKKGG
Sbjct: 1  MSKKNNLARRKKQHEFDLQREKAEKEKQAKKLQAKKNKMK--------VDGSENKKKKGG 60

Query: 61 AGFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          +GFQVGK+K+KTKLT  AKAKAAQAMELDK
Sbjct: 61 SGFQVGKRKLKTKLTEVAKAKAAQAMELDK 82

[Close]

BLAST of CmoCh06G010830 vs. TrEMBL
Match: I1JK99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.0e-21
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
          MSKKNNL++RK Q+EFDL+REKQEK K  +KL AKKNKMKV        DGSGKKKKGG+
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKV--------DGSGKKKKGGS 60

Query: 61 GFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          GFQVGK+KVKTKLTA AKAKAAQAMELDK
Sbjct: 61 GFQVGKRKVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of CmoCh06G010830 vs. TrEMBL
Match: A0A0B0MSD3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31098 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.7e-21
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGS-GKKKKGG 60
          MSKKNNLSRRK QHEFDL+RE++EKEK  KKLQAKKNKMK        VDGS  KKKKGG
Sbjct: 1  MSKKNNLSRRKKQHEFDLQREREEKEKKVKKLQAKKNKMK--------VDGSEKKKKKGG 60

Query: 61 AGFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          +GFQVGK+K+KTKLT  AKAKAAQAMELDK
Sbjct: 61 SGFQVGKRKLKTKLTEVAKAKAAQAMELDK 82

[Close]

BLAST of CmoCh06G010830 vs. TAIR10
Match: AT2G45860.1 (AT2G45860.1 unknown protein)

HSP 1 Score: 90.5 bits (223), Expect = 5.6e-19
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
          MSKKNNL++RK QHE++L++EK+ ++K  KKL A KNKMK        VDGSGKKKKG  
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMK--------VDGSGKKKKG-- 60

Query: 61 GFQVGKKKVKTKLTAAAKAKAAQAMELD 89
          GF VGKKK+KTKLT  AKAKAAQAMELD
Sbjct: 61 GFSVGKKKLKTKLTPTAKAKAAQAMELD 78

[Close]

BLAST of CmoCh06G010830 vs. NCBI nr
Match: gi|700201390|gb|KGN56523.1| (hypothetical protein Csa_3G122470 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 9.3e-24
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKV        DGSGKKKKGG 
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKV--------DGSGKKKKGGG 60

Query: 61 GFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          GFQVGKKKVKTKLTA AKAKA+QAMELDK
Sbjct: 61 GFQVGKKKVKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of CmoCh06G010830 vs. NCBI nr
Match: gi|629113098|gb|KCW78058.1| (hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 70/89 (78.65%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 1   MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
           MSKKN+LSRRK Q+EFDLRREK EKEK  KKLQ KKNKMKV        DGSGKKKKG  
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKV--------DGSGKKKKGAG 101

Query: 61  GFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
           GFQVGK+KVKTKLTA AKAKAAQAMELDK
Sbjct: 102 GFQVGKRKVKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of CmoCh06G010830 vs. NCBI nr
Match: gi|702326796|ref|XP_010053693.1| (PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 70/89 (78.65%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
          MSKKN+LSRRK Q+EFDLRREK EKEK  KKLQ KKNKMKV        DGSGKKKKG  
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKV--------DGSGKKKKGAG 60

Query: 61 GFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          GFQVGK+KVKTKLTA AKAKAAQAMELDK
Sbjct: 61 GFQVGKRKVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of CmoCh06G010830 vs. NCBI nr
Match: gi|571443846|ref|XP_006576335.1| (PREDICTED: uncharacterized protein LOC100782399 [Glycine max])

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-21
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGSGKKKKGGA 60
          MSKKNNL++RK Q+EFDL+REKQEK K  +KL AKKNKMKV        DGSGKKKKGG+
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKV--------DGSGKKKKGGS 60

Query: 61 GFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          GFQVGK+KVKTKLTA AKAKAAQAMELDK
Sbjct: 61 GFQVGKRKVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of CmoCh06G010830 vs. NCBI nr
Match: gi|590722203|ref|XP_007051831.1| (Uncharacterized protein TCM_005350 [Theobroma cacao])

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-21
Identity = 70/90 (77.78%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVSLSLFISVDGS-GKKKKGG 60
          MSKKNNL+RRK QHEFDL+REK EKEK AKKLQAKKNKMK        VDGS  KKKKGG
Sbjct: 1  MSKKNNLARRKKQHEFDLQREKAEKEKQAKKLQAKKNKMK--------VDGSENKKKKGG 60

Query: 61 AGFQVGKKKVKTKLTAAAKAKAAQAMELDK 90
          +GFQVGK+K+KTKLT  AKAKAAQAMELDK
Sbjct: 61 SGFQVGKRKLKTKLTEVAKAKAAQAMELDK 82

The following BLAST results are available for this feature:

BLAST of CmoCh06G010830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G010830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L493_CUCSA	6.5e-24	82.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1	[more]
A0A059CHY1_EUCGR	7.9e-22	78.65	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 ...	[more]
A0A061E133_THECC	3.0e-21	77.78	Uncharacterized protein OS=Theobroma cacao GN=TCM_005350 PE=4 SV=1	[more]
I1JK99_SOYBN	3.0e-21	76.40	Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1	[more]
A0A0B0MSD3_GOSAR	6.7e-21	76.67	Uncharacterized protein OS=Gossypium arboreum GN=F383_31098 PE=4 SV=1	[more]

BLAST of CmoCh06G010830 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45860.1	5.6e-19	67.05	unknown protein	[more]

BLAST of CmoCh06G010830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201390\|gb\|KGN56523.1\|	9.3e-24	82.02	hypothetical protein Csa_3G122470 [Cucumis sativus]	[more]
gi\|629113098\|gb\|KCW78058.1\|	1.1e-21	78.65	hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis]	[more]
gi\|702326796\|ref\|XP_010053693.1\|	1.1e-21	78.65	PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis]	[more]
gi\|571443846\|ref\|XP_006576335.1\|	4.3e-21	76.40	PREDICTED: uncharacterized protein LOC100782399 [Glycine max]	[more]
gi\|590722203\|ref\|XP_007051831.1\|	4.3e-21	77.78	Uncharacterized protein TCM_005350 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G010830.1	CmoCh06G010830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 4..42 scor
None	No IPR available	PANTHER	PTHR36745	FAMILY NOT NAMED	coord: 2..89 score: 1.9
None	No IPR available	PANTHER	PTHR36745:SF1	SUBFAMILY NOT NAMED	coord: 2..89 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G010830	CsaV3_3G008990	Cucumber (Chinese Long) v3	cmocucB0964
CmoCh06G010830	Carg24639	Silver-seed gourd	carcmoB0521

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G010830	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G010830	Watermelon (97103) v2	cmowmbB833
CmoCh06G010830	Watermelon (97103) v2	cmowmbB834
CmoCh06G010830	Wax gourd	cmowgoB1016
CmoCh06G010830	Cucurbita moschata (Rifu)	cmocmoB223
CmoCh06G010830	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G010830	Cucumber (Gy14) v1	cgycmoB0717
CmoCh06G010830	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G010830	Cucurbita maxima (Rimu)	cmacmoB269
CmoCh06G010830	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G010830	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G010830	Cucurbita maxima (Rimu)	cmacmoB831
CmoCh06G010830	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G010830	Wild cucumber (PI 183967)	cmocpiB826
CmoCh06G010830	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G010830	Cucumber (Chinese Long) v2	cmocuB818
CmoCh06G010830	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G010830	Melon (DHL92) v3.5.1	cmomeB759
CmoCh06G010830	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G010830	Watermelon (Charleston Gray)	cmowcgB744
CmoCh06G010830	Watermelon (97103) v1	cmowmB793
CmoCh06G010830	Watermelon (97103) v1	cmowmB794
CmoCh06G010830	Cucurbita pepo (Zucchini)	cmocpeB784
CmoCh06G010830	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G010830	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G010830	Bottle gourd (USVL1VR-Ls)	cmolsiB753
CmoCh06G010830	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G010830	Cucumber (Gy14) v2	cgybcmoB412
CmoCh06G010830	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G010830	Melon (DHL92) v3.6.1	cmomedB863
CmoCh06G010830	Silver-seed gourd	carcmoB0665
CmoCh06G010830	Silver-seed gourd	carcmoB0666