CmoCh06G010420 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G010420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRing finger protein, putative
LocationCmo_Chr06 : 8109911 .. 8111764 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAGTCAAACTCTTGCAAGATCATAGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGTCAAAATTCTACCCTTTGTTGCTATTTCCTAAGTTCACGTTCATTTTTAAACTCTTCATCTTCGAGAATGCATTGTTCGAGGAAAATGTAACGACCTAGTTCTTTTTTATGCTGAAATAATCATTTAAACTATGAAAGGTCCTTAAAACACTTTAACATGAGTTAAAAGAACACAAGTAAAATAAAACATCAATGCCCTATAATAACCTATAGTCAGACGAAATTAAATGCAGCCTAGCCCTATACTAACCTATAGTCCACAAAAATAAAATGCAAACTACCCTATGCACGTGACATGGTCTCCTGAGTTGTGATGCCACTGTCAGCCGTACATGGAAGTTTTGCTTTTACTTGAAAAATAAGAGTAACACATAACTTGAGTATTTTAAGACATACTCATTAAGTGACCTTACTATTGGGGTAGATGCAAGCACACACAATCACGTGCGAGCCGTGCGTAGAATAGTAAATATACATCTCATTACCCGCTTAGGATAGTCGGCTAAGGGAATACGGATTTAAATGATAGGTCAAATTCATGATTGTGTGTGCTTACATTTAACTCCTACAGTGGGGTCACTTACGGAGTATTTCTTAAAATACTCAAGCCATGTGTTACTCCTATTTTCCAAGTAAAGGCAAGACTCCCATGTTATTGAGTATTTCTTAAAATACTCAAGTCATGTGTTACTCCTATTTTCCAAGTAAAGGCAAGACTCCCATGTACGGCTGACAATGACATCGCAACTCAAGAGACCATGTCACATGCATAGGGTAGTTTGCATTTTATTTTTGTAGACTATAGGTTAGTATAGGGCTAGACTGCATTTAATTTTGTAGACTATATGTATATACAGTAACGACTTTAGGTTAAGTAGAAATCTAGGGTTGTTACATAAAAAGTCAAATAAAAATAAATCATTGTTTTCTTCAAATCATGGTCAACTTTAACCCATATTGCAAAAATAAAGATACAGGCTGCTATATGAATCTTAGACTGGCTCTTGGTTGACTAAGACATAGATAAAGCTTATATTATAGGCAAGTTGAGATTAAAGTAATAACAGAAGAATATCATGGATGATGAAGGAATGACAAAGACATTTGTTCTCAGCTGCACGTCTCTTAATGATATCATTCATGATATAGTTTGCAAAAATATCAAACTTTAAATGATGAAATACCTTAATTTTCAGGGGAGAATAATGGTCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTTATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGAATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGACGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCAGGCCCCAATGGCACCACCTGCCCCATATGCCTTGGAGAGTACTTAACTAAAGACACGGTCAGATGCATTCCTGAGTGCAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAA

mRNA sequence

ATGTCAAAGTCAAACTCTTGCAAGATCATAGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGTCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTTATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGAATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGACGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCAGGCCCCAATGGCACCACCTGCCCCATATGCCTTGGAGAGTACTTAACTAAAGACACGGTCAGATGCATTCCTGAGTGCAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAA

Coding sequence (CDS)

ATGTCAAAGTCAAACTCTTGCAAGATCATAGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGTCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTTATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGAATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGACGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCAGGCCCCAATGGCACCACCTGCCCCATATGCCTTGGAGAGTACTTAACTAAAGACACGGTCAGATGCATTCCTGAGTGCAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAA
Homology
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BLAST of CmoCh06G010420 vs. Swiss-Prot
Match: AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.1e-45
Identity = 103/215 (47.91%), Postives = 137/215 (63.72%), Query Frame = 1 

Query: 6   SCKIIANLTVPVAYPDEA--NQFLTD-HYGDLLLTWNSPACSICETEGRLCGFKSNSGLG 65
           SC+I+  L VPV+    A  ++F TD +  DL L W+SP+CS CE +   CGF+SN+ L 
Sbjct: 163 SCQIVKTLDVPVSRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQ 222

Query: 66  IACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQNQ 125
           + CF   ++G N   ++L+II + II P  + +F      C A    G+  S R  +  Q
Sbjct: 223 VKCFPFENSGYNTEPQVLKIILLSIIGP--LTIFA----TCIA---VGVCTSERFASLIQ 282

Query: 126 QQVN-PALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGT-TCPICLGEYLTKDTV 185
           + V   AL+    I  +GLDES I+SY+K  LGESRRLPG N    CPICL EY +K+TV
Sbjct: 283 RNVAIAALQPNEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETV 342

Query: 186 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPS 216
           RCIPEC HCFH +CID WL+++ SCPLCRNSPSP+
Sbjct: 343 RCIPECDHCFHSECIDVWLKIHGSCPLCRNSPSPA 368

[Close]
BLAST of CmoCh06G010420 vs. Swiss-Prot
Match: ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 5.2e-44
Identity = 102/230 (44.35%), Postives = 134/230 (58.26%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVA-------YPDEANQFLTDHYGDLLLTWNSPACSICE--TEGRL 61
           S  +SC I   L +P +       YPD  N        D+ L W+SP C  CE  T  R 
Sbjct: 161 SMPSSCHIFKILPLPFSWFVAYTTYPDGQNS------RDMWLKWDSPDCRDCERRTNSR- 220

Query: 62  CGFKSNSGLGIACFNKYSTG-ENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGI 121
           CGFK+N+   + CF+  + G  N GL++L+I+C+ ++ P     F  G  +C        
Sbjct: 221 CGFKNNTSHQVECFSSVNPGLHNTGLQVLKIMCLSLVGPLTALTFCVGLVMC-------- 280

Query: 122 ADSRRNQAQNQQQVNPALE---TEPP---IRLSGLDESTIDSYQKVILGESRRLP-GPNG 181
             S R  +Q QQ V   L    T  P   +   GLDESTI+SY+KV LGESRRLP G N 
Sbjct: 281 -SSERVSSQIQQAVVARLSGSVTSQPSNEVARIGLDESTIESYKKVELGESRRLPTGSND 340

Query: 182 TTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSP 215
             CPICL EY TK+TVRC+PEC+HCFH +CID WL+++SSCP+CR++PSP
Sbjct: 341 VVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPSP 374

[Close]
BLAST of CmoCh06G010420 vs. Swiss-Prot
Match: ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 5.4e-41
Identity = 94/217 (43.32%), Postives = 124/217 (57.14%), Query Frame = 1 

Query: 6   SCKIIANLTVPV--AYPD---EANQFLTDHY-GDLLLTWNSPACSICETEGRLCGFKSNS 65
           SC+I+  L VPV   Y D   E   F T  + G++LL W+SP C  CE E   CGFK+ +
Sbjct: 92  SCQIVKGLYVPVDVIYKDVITEEKGFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFKNKA 151

Query: 66  GLGIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 125
            L +           + LR L I          +C+ G     C A      ++   NQ 
Sbjct: 152 SLEVKYLADPPDETKSRLRPLIIT---------LCIIGGITATCIAAIRIYNSERFVNQR 211

Query: 126 QNQQQVNPALETEPP---IRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLT 185
           +    +     T+ P   +  +GLD+STI+SY+KV LGESRRLPG NG  CPICL EY +
Sbjct: 212 RQNAAITARNTTQQPRGVVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYAS 271

Query: 186 KDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPS 214
           K+TVRC+PEC HCFHV CID+WL+++SSCP+CRNS S
Sbjct: 272 KETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNSRS 299

[Close]
BLAST of CmoCh06G010420 vs. Swiss-Prot
Match: AT21B_ARATH (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.6e-38
Identity = 83/206 (40.29%), Postives = 113/206 (54.85%), Query Frame = 1 

Query: 6   SCKIIANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIAC 65
           SC+I+  + VP   P    +F +     LLL WNSP C  CE +   CGFK+ +   + C
Sbjct: 162 SCQIVKRIYVPADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKC 221

Query: 66  FNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQNQQQV 125
           F    +G  +   +  +IC+ II   ++ V       C A   +     RR+ A      
Sbjct: 222 FGAKKSGHLSRAVVAVLICLSIIGAVILFV------TCIAIRIHN-TPRRRHWAVPAAAA 281

Query: 126 NPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPE 185
               +    +   GLD+STI+ Y+ + LGESRR PG NG  CPICL EY++K+TVR IPE
Sbjct: 282 TVMQQPREVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPE 341

Query: 186 CKHCFHVDCIDQWLRVNSSCPLCRNS 212
           C HCFH  CID WL+++ SCPLCRNS
Sbjct: 342 CDHCFHAKCIDVWLKIHGSCPLCRNS 360

[Close]
BLAST of CmoCh06G010420 vs. Swiss-Prot
Match: AT21C_ARATH (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana GN=ATL21C PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 87/211 (41.23%), Postives = 114/211 (54.03%), Query Frame = 1 

Query: 6   SCKIIANLTVPVAYPDEANQFLTD-HYGDLLLTWNSPACSI-CETEGRLCGFKSNSGLGI 65
           SC+I+  L VP   P    +F +D +   LLL W  P C   C    +  G   NS +  
Sbjct: 161 SCQIVKRLHVPATSPFGETRFSSDLNNQSLLLEWALPDCRAKCLGATKKTGTIYNSNIFS 220

Query: 66  ACFN-KYSTGEN--NGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQ 125
             F+  Y + E   NG     ++ +VI L S + VF F   I    +     DS    A 
Sbjct: 221 CSFSFLYDSRELFINGNLSSGVLVLVISL-SAVTVFVFPTCIAIRLYDSERFDSAIAAAT 280

Query: 126 NQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTV 185
             QQ    +         GLD+STI++++K+ LGESRRL G NG  CPICL EY +K+TV
Sbjct: 281 VMQQPREVMARR------GLDQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETV 340

Query: 186 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNS 212
           R IPEC HCFHV+CID WL+++ SCPLCRNS
Sbjct: 341 RFIPECDHCFHVECIDVWLKIHGSCPLCRNS 364

[Close]
BLAST of CmoCh06G010420 vs. TrEMBL
Match: A0A0A0L3V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119610 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.3e-99
Identity = 169/218 (77.52%), Postives = 190/218 (87.16%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGL 61
           S S SC I+  L VPV+ PDE NQF TD  GDL+LTW+SPAC ICETEGRLCG+KSNSG 
Sbjct: 160 SMSTSCTIMKTLPVPVSNPDETNQFSTDLNGDLVLTWDSPACGICETEGRLCGYKSNSGQ 219

Query: 62  GIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQN 121
           GI+CF+KY++ ENNGLR+LRIICVVI+LP+L+CVFG GCFIC A+W Y + D R NQ Q+
Sbjct: 220 GISCFDKYTSEENNGLRVLRIICVVILLPTLICVFGLGCFICLAKWSYSLTDGRGNQVQH 279

Query: 122 QQQVNPA-LETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTV 181
           +QQVNPA  + E P RLSGL+ESTI+SYQKVILGESRRLPGPNGTTC ICLGEYLTKDTV
Sbjct: 280 RQQVNPAGSDLEAPTRLSGLNESTIESYQKVILGESRRLPGPNGTTCSICLGEYLTKDTV 339

Query: 182 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPSH 219
           RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSP+PSPSH
Sbjct: 340 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPNPSPSH 377

[Close]
BLAST of CmoCh06G010420 vs. TrEMBL
Match: W9R810_9ROSA (Putative RING-H2 finger protein ATL21A OS=Morus notabilis GN=L484_017577 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.2e-59
Identity = 113/218 (51.83%), Postives = 144/218 (66.06%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQ-FLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSG 61
           S S SC++I+ L VPV+ P   ++ F +    DL LTW  P CSICE +G LCGFKSN  
Sbjct: 156 SMSASCEVISTLQVPVSRPVRYDEGFSSALNNDLHLTWYEPDCSICEAQGGLCGFKSNIS 215

Query: 62  LGIACFN-KYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 121
             I CF      G N+GL++ RIIC  I +P++ C  G  CF CF      +   R   A
Sbjct: 216 QDIGCFYFPGKDGSNDGLKLFRIICFSIAVPAITCAVGIACFACFVDRTNHLNARRSTTA 275

Query: 122 QNQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDT 181
                  P    EP I + GLDE+TI+SYQK++LGESRRLPGPN  TCPICL EY +K+T
Sbjct: 276 VAAAPEGP----EPAIVMMGLDETTIESYQKLVLGESRRLPGPNDITCPICLSEYCSKET 335

Query: 182 VRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPS 218
           +RCIP+CKHCFH +CID+WLR+N +CP+CRN+PSPSP+
Sbjct: 336 LRCIPDCKHCFHAECIDEWLRLNGTCPVCRNNPSPSPA 369

[Close]
BLAST of CmoCh06G010420 vs. TrEMBL
Match: A0A061DTM6_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_005156 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-58
Identity = 109/218 (50.00%), Postives = 148/218 (67.89%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQFLTDHYG-DLLLTWNSPACSICETEGRLCGFKSNSG 61
           S + SC+II  L +PV++P + ++ L+     D+ LTW++P C  CE+EG +CGFKS   
Sbjct: 152 SMAESCQIITTLRIPVSWPAQYDEALSSELDEDIELTWHAPQCGDCESEGGICGFKSIGS 211

Query: 62  LGIACFNKYSTGEN-NGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 121
             + CF+   +G + NGL++ RIIC+ I +P L C  G   F C         DSRR   
Sbjct: 212 EEVDCFHLPKSGRSGNGLQVFRIICLSIAVPVLSCAIGIAVFAC-------CLDSRRRNR 271

Query: 122 QNQQQVNP---ALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLT 181
            N  Q N    A+  +P + ++GLD+STI+SYQK++LGESRRLPGPN +TCPICL EYL+
Sbjct: 272 GNSTQQNTGHSAVTPQPTLVVTGLDQSTIESYQKLVLGESRRLPGPNDSTCPICLSEYLS 331

Query: 182 KDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSP 215
           KDT+RCIPEC HCFH +CID+WLR+NS+CP+CR SP P
Sbjct: 332 KDTIRCIPECNHCFHAECIDEWLRMNSTCPVCRYSPFP 362

[Close]
BLAST of CmoCh06G010420 vs. TrEMBL
Match: M5X5I4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb022242mg PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 8.4e-57
Identity = 109/216 (50.46%), Postives = 141/216 (65.28%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQ-FLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSG 61
           S S +C+I+A L VPV    +    F T+   DL LTW  PACS CE +G +CG  SN+ 
Sbjct: 155 SMSTTCRILATLAVPVTRQVQTEDGFSTNLDSDLFLTWYEPACSACEIQGGICGLLSNTS 214

Query: 62  LGIAC-FNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 121
             + C +N  + G N G ++ RIICV I +P+L C  G  CF C      G   ++R+  
Sbjct: 215 QELVCDYNSTAGGSNKGFQVFRIICVSITVPALTCAVGIACFACIKDRVPG-GSAQRSAT 274

Query: 122 QNQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDT 181
               +  P    EP I   GLD++TI+SYQ ++LGESRRLPGPN TTC ICL EYLTK+T
Sbjct: 275 AVAAEPQPQ---EPTIVTMGLDQTTIESYQMLVLGESRRLPGPNDTTCAICLSEYLTKET 334

Query: 182 VRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPS 216
           VRCIPECKHCFH  C+D+WLR+NS+CP+CRN+PSP+
Sbjct: 335 VRCIPECKHCFHAACVDEWLRLNSTCPVCRNNPSPA 366

[Close]
BLAST of CmoCh06G010420 vs. TrEMBL
Match: A0A0D2SZK5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G125000 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.4e-56
Identity = 108/217 (49.77%), Postives = 147/217 (67.74%), Query Frame = 1 

Query: 4   SNSCKII-ANLTVPVAYP-DEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGL 63
           S SC+++ A L VPV++P  E  +F  +  GD+ LTW  P C  CE +G +CGFKSN+  
Sbjct: 161 SYSCRVVVAALPVPVSWPVKEDEEFTAELGGDIQLTWYVPQCGDCEAQGGICGFKSNNSD 220

Query: 64  GIACFNKY--STGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 123
            I CF +   S+   NGLR+  IIC+ I +P+L C  G   F C          SR +  
Sbjct: 221 EIDCFRRLPESSQTGNGLRVFGIICLSIAVPALACATGIALFAC-------CFSSRNHAG 280

Query: 124 QNQQQVN---PALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLT 183
           ++  Q N    A+  +P + ++GLDESTI+SY+K++LGESRR+PGPN +TCPICL EYL+
Sbjct: 281 ESPMQRNNRPAAVLPQPAVVVTGLDESTIESYEKLVLGESRRIPGPNDSTCPICLSEYLS 340

Query: 184 KDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPS 214
           KDT+RCIPECKHCFH +CID+WLR+NS+CP+CR SP+
Sbjct: 341 KDTIRCIPECKHCFHAECIDEWLRMNSTCPVCRKSPT 370

[Close]
BLAST of CmoCh06G010420 vs. TAIR10
Match: AT2G46495.1 (AT2G46495.1 RING/U-box superfamily protein)

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-46
Identity = 103/215 (47.91%), Postives = 137/215 (63.72%), Query Frame = 1 

Query: 6   SCKIIANLTVPVAYPDEA--NQFLTD-HYGDLLLTWNSPACSICETEGRLCGFKSNSGLG 65
           SC+I+  L VPV+    A  ++F TD +  DL L W+SP+CS CE +   CGF+SN+ L 
Sbjct: 163 SCQIVKTLDVPVSRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQ 222

Query: 66  IACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQNQ 125
           + CF   ++G N   ++L+II + II P  + +F      C A    G+  S R  +  Q
Sbjct: 223 VKCFPFENSGYNTEPQVLKIILLSIIGP--LTIFA----TCIA---VGVCTSERFASLIQ 282

Query: 126 QQVN-PALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGT-TCPICLGEYLTKDTV 185
           + V   AL+    I  +GLDES I+SY+K  LGESRRLPG N    CPICL EY +K+TV
Sbjct: 283 RNVAIAALQPNEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETV 342

Query: 186 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPS 216
           RCIPEC HCFH +CID WL+++ SCPLCRNSPSP+
Sbjct: 343 RCIPECDHCFHSECIDVWLKIHGSCPLCRNSPSPA 368

[Close]
BLAST of CmoCh06G010420 vs. TAIR10
Match: AT2G25410.1 (AT2G25410.1 RING/U-box superfamily protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 102/230 (44.35%), Postives = 134/230 (58.26%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVA-------YPDEANQFLTDHYGDLLLTWNSPACSICE--TEGRL 61
           S  +SC I   L +P +       YPD  N        D+ L W+SP C  CE  T  R 
Sbjct: 161 SMPSSCHIFKILPLPFSWFVAYTTYPDGQNS------RDMWLKWDSPDCRDCERRTNSR- 220

Query: 62  CGFKSNSGLGIACFNKYSTG-ENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGI 121
           CGFK+N+   + CF+  + G  N GL++L+I+C+ ++ P     F  G  +C        
Sbjct: 221 CGFKNNTSHQVECFSSVNPGLHNTGLQVLKIMCLSLVGPLTALTFCVGLVMC-------- 280

Query: 122 ADSRRNQAQNQQQVNPALE---TEPP---IRLSGLDESTIDSYQKVILGESRRLP-GPNG 181
             S R  +Q QQ V   L    T  P   +   GLDESTI+SY+KV LGESRRLP G N 
Sbjct: 281 -SSERVSSQIQQAVVARLSGSVTSQPSNEVARIGLDESTIESYKKVELGESRRLPTGSND 340

Query: 182 TTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSP 215
             CPICL EY TK+TVRC+PEC+HCFH +CID WL+++SSCP+CR++PSP
Sbjct: 341 VVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPSP 374

[Close]
BLAST of CmoCh06G010420 vs. TAIR10
Match: AT1G28040.1 (AT1G28040.1 RING/U-box superfamily protein)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-42
Identity = 94/217 (43.32%), Postives = 124/217 (57.14%), Query Frame = 1 

Query: 6   SCKIIANLTVPV--AYPD---EANQFLTDHY-GDLLLTWNSPACSICETEGRLCGFKSNS 65
           SC+I+  L VPV   Y D   E   F T  + G++LL W+SP C  CE E   CGFK+ +
Sbjct: 92  SCQIVKGLYVPVDVIYKDVITEEKGFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFKNKA 151

Query: 66  GLGIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 125
            L +           + LR L I          +C+ G     C A      ++   NQ 
Sbjct: 152 SLEVKYLADPPDETKSRLRPLIIT---------LCIIGGITATCIAAIRIYNSERFVNQR 211

Query: 126 QNQQQVNPALETEPP---IRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLT 185
           +    +     T+ P   +  +GLD+STI+SY+KV LGESRRLPG NG  CPICL EY +
Sbjct: 212 RQNAAITARNTTQQPRGVVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYAS 271

Query: 186 KDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPS 214
           K+TVRC+PEC HCFHV CID+WL+++SSCP+CRNS S
Sbjct: 272 KETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNSRS 299

[Close]
BLAST of CmoCh06G010420 vs. TAIR10
Match: AT5G53110.1 (AT5G53110.1 RING/U-box superfamily protein)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 87/214 (40.65%), Postives = 120/214 (56.07%), Query Frame = 1 

Query: 4   SNSCKIIANLTVPVAYPD-EANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLG 63
           S SC+++  + VPV +P  E     +D   +L LTW  P CS CE +G  CG KSNS   
Sbjct: 170 SQSCRLMKTVYVPVRWPFYEQIVSSSDLSDNLWLTWRVPRCSRCEIKGGKCGIKSNSSRE 229

Query: 64  IACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADS--RRNQAQ 123
           I C + +        R    I V   +P  + VFG  CF+      Y    S  +R +  
Sbjct: 230 IICSHVHKPAIPRRARYA--IAVGAGIPGALIVFGLFCFV------YSKISSCIKRRRLV 289

Query: 124 NQQQVNPALE--TEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKD 183
              ++N A        + + GLD  TI+SY K++LGES+RLP  +  TC ICL EY  K+
Sbjct: 290 PTPEINNAQAHYLHSSVIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKE 349

Query: 184 TVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSP 213
           T+R IP+C+HCFH DCID+WL++N +CP+CRNSP
Sbjct: 350 TLRTIPQCQHCFHADCIDEWLKLNGTCPVCRNSP 375

[Close]
BLAST of CmoCh06G010420 vs. TAIR10
Match: AT2G46494.1 (AT2G46494.1 RING/U-box superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 3.1e-39
Identity = 83/206 (40.29%), Postives = 113/206 (54.85%), Query Frame = 1 

Query: 6   SCKIIANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIAC 65
           SC+I+  + VP   P    +F +     LLL WNSP C  CE +   CGFK+ +   + C
Sbjct: 162 SCQIVKRIYVPADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKC 221

Query: 66  FNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQNQQQV 125
           F    +G  +   +  +IC+ II   ++ V       C A   +     RR+ A      
Sbjct: 222 FGAKKSGHLSRAVVAVLICLSIIGAVILFV------TCIAIRIHN-TPRRRHWAVPAAAA 281

Query: 126 NPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPE 185
               +    +   GLD+STI+ Y+ + LGESRR PG NG  CPICL EY++K+TVR IPE
Sbjct: 282 TVMQQPREVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPE 341

Query: 186 CKHCFHVDCIDQWLRVNSSCPLCRNS 212
           C HCFH  CID WL+++ SCPLCRNS
Sbjct: 342 CDHCFHAKCIDVWLKIHGSCPLCRNS 360

[Close]
BLAST of CmoCh06G010420 vs. NCBI nr
Match: gi|659074985|ref|XP_008437902.1| (PREDICTED: putative RING-H2 finger protein ATL21A [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 2.6e-99
Identity = 170/218 (77.98%), Postives = 189/218 (86.70%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGL 61
           S S SC I+  L VPV+ PDE NQF T+  GDL+LTW SPAC ICETEGRLCG+KSNSG 
Sbjct: 159 SMSTSCTIMTTLPVPVSNPDETNQFSTNLNGDLVLTWYSPACGICETEGRLCGYKSNSGQ 218

Query: 62  GIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQN 121
           GIACF+KY++ ENNGLR+LRIICVVI+LP+LMCV G GCFIC A+W Y + D R NQ Q+
Sbjct: 219 GIACFDKYTSEENNGLRVLRIICVVILLPTLMCVIGLGCFICMAKWSYSLTDGRGNQVQH 278

Query: 122 QQQVNPA-LETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTV 181
           +QQVNPA  + E P RLSGL+ESTI+SYQKVILGESRRLPGPNGTTCPICLGEYLTKDTV
Sbjct: 279 RQQVNPAGSDLEAPSRLSGLNESTIESYQKVILGESRRLPGPNGTTCPICLGEYLTKDTV 338

Query: 182 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPSH 219
           RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSP+PSPSH
Sbjct: 339 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPNPSPSH 376

[Close]
BLAST of CmoCh06G010420 vs. NCBI nr
Match: gi|449432054|ref|XP_004133815.1| (PREDICTED: putative RING-H2 finger protein ATL21A [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 3.3e-99
Identity = 169/218 (77.52%), Postives = 190/218 (87.16%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGL 61
           S S SC I+  L VPV+ PDE NQF TD  GDL+LTW+SPAC ICETEGRLCG+KSNSG 
Sbjct: 160 SMSTSCTIMKTLPVPVSNPDETNQFSTDLNGDLVLTWDSPACGICETEGRLCGYKSNSGQ 219

Query: 62  GIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQN 121
           GI+CF+KY++ ENNGLR+LRIICVVI+LP+L+CVFG GCFIC A+W Y + D R NQ Q+
Sbjct: 220 GISCFDKYTSEENNGLRVLRIICVVILLPTLICVFGLGCFICLAKWSYSLTDGRGNQVQH 279

Query: 122 QQQVNPA-LETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTV 181
           +QQVNPA  + E P RLSGL+ESTI+SYQKVILGESRRLPGPNGTTC ICLGEYLTKDTV
Sbjct: 280 RQQVNPAGSDLEAPTRLSGLNESTIESYQKVILGESRRLPGPNGTTCSICLGEYLTKDTV 339

Query: 182 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPSH 219
           RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSP+PSPSH
Sbjct: 340 RCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPNPSPSH 377

[Close]
BLAST of CmoCh06G010420 vs. NCBI nr
Match: gi|703096201|ref|XP_010095770.1| (Putative RING-H2 finger protein ATL21A [Morus notabilis])

HSP 1 Score: 235.7 bits (600), Expect = 7.5e-59
Identity = 113/218 (51.83%), Postives = 144/218 (66.06%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQ-FLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSG 61
           S S SC++I+ L VPV+ P   ++ F +    DL LTW  P CSICE +G LCGFKSN  
Sbjct: 156 SMSASCEVISTLQVPVSRPVRYDEGFSSALNNDLHLTWYEPDCSICEAQGGLCGFKSNIS 215

Query: 62  LGIACFN-KYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 121
             I CF      G N+GL++ RIIC  I +P++ C  G  CF CF      +   R   A
Sbjct: 216 QDIGCFYFPGKDGSNDGLKLFRIICFSIAVPAITCAVGIACFACFVDRTNHLNARRSTTA 275

Query: 122 QNQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDT 181
                  P    EP I + GLDE+TI+SYQK++LGESRRLPGPN  TCPICL EY +K+T
Sbjct: 276 VAAAPEGP----EPAIVMMGLDETTIESYQKLVLGESRRLPGPNDITCPICLSEYCSKET 335

Query: 182 VRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPS 218
           +RCIP+CKHCFH +CID+WLR+N +CP+CRN+PSPSP+
Sbjct: 336 LRCIPDCKHCFHAECIDEWLRLNGTCPVCRNNPSPSPA 369

[Close]
BLAST of CmoCh06G010420 vs. NCBI nr
Match: gi|590721258|ref|XP_007051560.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 233.0 bits (593), Expect = 4.9e-58
Identity = 109/218 (50.00%), Postives = 148/218 (67.89%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQFLTDHYG-DLLLTWNSPACSICETEGRLCGFKSNSG 61
           S + SC+II  L +PV++P + ++ L+     D+ LTW++P C  CE+EG +CGFKS   
Sbjct: 152 SMAESCQIITTLRIPVSWPAQYDEALSSELDEDIELTWHAPQCGDCESEGGICGFKSIGS 211

Query: 62  LGIACFNKYSTGEN-NGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 121
             + CF+   +G + NGL++ RIIC+ I +P L C  G   F C         DSRR   
Sbjct: 212 EEVDCFHLPKSGRSGNGLQVFRIICLSIAVPVLSCAIGIAVFAC-------CLDSRRRNR 271

Query: 122 QNQQQVNP---ALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLT 181
            N  Q N    A+  +P + ++GLD+STI+SYQK++LGESRRLPGPN +TCPICL EYL+
Sbjct: 272 GNSTQQNTGHSAVTPQPTLVVTGLDQSTIESYQKLVLGESRRLPGPNDSTCPICLSEYLS 331

Query: 182 KDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSP 215
           KDT+RCIPEC HCFH +CID+WLR+NS+CP+CR SP P
Sbjct: 332 KDTIRCIPECNHCFHAECIDEWLRMNSTCPVCRYSPFP 362

[Close]
BLAST of CmoCh06G010420 vs. NCBI nr
Match: gi|645254753|ref|XP_008233182.1| (PREDICTED: putative RING-H2 finger protein ATL21A [Prunus mume])

HSP 1 Score: 230.7 bits (587), Expect = 2.4e-57
Identity = 110/216 (50.93%), Postives = 142/216 (65.74%), Query Frame = 1 

Query: 2   SKSNSCKIIANLTVPVAYPDEANQ-FLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSG 61
           S S +C+I+A L VPV    +    F T+   DL LTW  PACS CE +G +CG  SN+ 
Sbjct: 155 SMSTTCRILATLAVPVTRQVQTEDGFSTNLDSDLFLTWYEPACSACEIQGGICGLFSNTS 214

Query: 62  LGIAC-FNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQA 121
             + C +N  + G N G ++ RIIC+ I +P+L C  G  CF C      G   ++R+  
Sbjct: 215 QELVCDYNSTAGGSNKGFQVFRIICMSITVPALTCAVGIACFACIKDRVPG-GSAQRSAT 274

Query: 122 QNQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDT 181
               +  P    EP I   GLD++TI+SYQ ++LGESRRLPGPN TTC ICL EYLTK+T
Sbjct: 275 AVAAEPQPH---EPTIVTMGLDQTTIESYQMLVLGESRRLPGPNDTTCAICLSEYLTKET 334

Query: 182 VRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPS 216
           VRCIPECKHCFH DC+D+WLR+NS+CP+CRNSPSP+
Sbjct: 335 VRCIPECKHCFHADCVDEWLRLNSTCPVCRNSPSPA 366

The following BLAST results are available for this feature:
BLAST of CmoCh06G010420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AT21A_ARATH2.1e-4547.91Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV... [more]
ATL22_ARATH5.2e-4444.35RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2[more]
ATL20_ARATH5.4e-4143.32RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2[more]
AT21B_ARATH5.6e-3840.29Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV... [more]
AT21C_ARATH1.3e-3141.23Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana GN=ATL21C PE=3 SV... [more]
BLAST of CmoCh06G010420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3V8_CUCSA2.3e-9977.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119610 PE=4 SV=1[more]
W9R810_9ROSA5.2e-5951.83Putative RING-H2 finger protein ATL21A OS=Morus notabilis GN=L484_017577 PE=4 SV... [more]
A0A061DTM6_THECC3.4e-5850.00RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_005156 PE=4 S... [more]
M5X5I4_PRUPE8.4e-5750.46Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb022242mg PE=4 SV=1[more]
A0A0D2SZK5_GOSRA5.4e-5649.77Uncharacterized protein OS=Gossypium raimondii GN=B456_008G125000 PE=4 SV=1[more]
BLAST of CmoCh06G010420 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46495.11.2e-4647.91 RING/U-box superfamily protein[more]
AT2G25410.12.9e-4544.35 RING/U-box superfamily protein[more]
AT1G28040.13.0e-4243.32 RING/U-box superfamily protein[more]
AT5G53110.11.4e-3940.65 RING/U-box superfamily protein[more]
AT2G46494.13.1e-3940.29 RING/U-box superfamily protein[more]
BLAST of CmoCh06G010420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074985|ref|XP_008437902.1|2.6e-9977.98PREDICTED: putative RING-H2 finger protein ATL21A [Cucumis melo][more]
gi|449432054|ref|XP_004133815.1|3.3e-9977.52PREDICTED: putative RING-H2 finger protein ATL21A [Cucumis sativus][more]
gi|703096201|ref|XP_010095770.1|7.5e-5951.83Putative RING-H2 finger protein ATL21A [Morus notabilis][more]
gi|590721258|ref|XP_007051560.1|4.9e-5850.00RING/U-box superfamily protein, putative [Theobroma cacao][more]
gi|645254753|ref|XP_008233182.1|2.4e-5750.93PREDICTED: putative RING-H2 finger protein ATL21A [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030247 polysaccharide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G010420.1CmoCh06G010420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 166..209
score: 4.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 167..208
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 167..209
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 163..210
score: 1.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 116..216
score: 1.6E-41coord: 86..95
score: 1.6
NoneNo IPR availablePANTHERPTHR14155:SF157RING-H2 FINGER PROTEIN ATL69-RELATEDcoord: 116..216
score: 1.6E-41coord: 86..95
score: 1.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 166..212
score: 2.25

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G010420Cucsa.259190Cucumber (Gy14) v1cgycmoB0718
CmoCh06G010420CmaCh00G002910Cucurbita maxima (Rimu)cmacmoB022
CmoCh06G010420CmaCh06G010590Cucurbita maxima (Rimu)cmacmoB831
CmoCh06G010420Cla021160Watermelon (97103) v1cmowmB793
CmoCh06G010420Csa3G119610Cucumber (Chinese Long) v2cmocuB806
CmoCh06G010420MELO3C006027Melon (DHL92) v3.5.1cmomeB755
CmoCh06G010420ClCG05G000850Watermelon (Charleston Gray)cmowcgB743
CmoCh06G010420CSPI03G07970Wild cucumber (PI 183967)cmocpiB814
CmoCh06G010420Cp4.1LG08g00720Cucurbita pepo (Zucchini)cmocpeB796
CmoCh06G010420MELO3C006027.2Melon (DHL92) v3.6.1cmomedB857
CmoCh06G010420CsaV3_3G008090Cucumber (Chinese Long) v3cmocucB0953
CmoCh06G010420Cla97C05G091090Watermelon (97103) v2cmowmbB835
CmoCh06G010420Cla97C05G081010Watermelon (97103) v2cmowmbB833
CmoCh06G010420Bhi01G000347Wax gourdcmowgoB1013
CmoCh06G010420CsGy3G008110Cucumber (Gy14) v2cgybcmoB401
CmoCh06G010420Carg20892Silver-seed gourdcarcmoB1332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G010420Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G010420Bottle gourd (USVL1VR-Ls)cmolsiB758
CmoCh06G010420Melon (DHL92) v3.6.1cmomedB836
CmoCh06G010420Silver-seed gourdcarcmoB0171
CmoCh06G010420Cucumber (Chinese Long) v3cmocucB0976
CmoCh06G010420Watermelon (97103) v2cmowmbB810
CmoCh06G010420Wax gourdcmowgoB1002
CmoCh06G010420Cucurbita moschata (Rifu)cmocmoB224
CmoCh06G010420Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G010420Cucurbita maxima (Rimu)cmacmoB829