CmoCh06G010390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G010390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Condensin complex subunit 3
Location	Cmo_Chr06 : 8098250 .. 8101646 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAGACAGCACACAGATTGTGGGCAGGGCCCCAACGAACGCTCTGTCCAATCTGTCATTTCCGCTGCCGGCGCTCCTCTGTTCGAACCCTTTCTTTTCTACCCTTCATCTTCTCAGTTCTTTGCATTCTATTCCATTTCCAGAGTCGATATGGCAGAATCCTCACCAGACCGGTCGTCTCCCCCTCTTTCATCCGGTACGTTTCCTATCAATCTCCTGATTTTTCCTTTTTTCTTTTTTCTTTTTTATTTTTCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATATGTTTGATATCGTCATTCACGTGATGATTTTGCATTGCGTTTACATTTTCTGAGGATTCTTTGATCAATTTCCATCGGTTGTAGTATACGAGTATTTTGGAATCAATAGGCTAGTGCTAGCATTTTGAATTAAAAGTATCCACTTCGAATTTTGCAGAAAATTTGCAGACAGATGAATCGCCTGCTCATCACAAGGAGACTCATGGAAGACGTGATGATATTGACGAGAATACCTCGTTGGATGAAGTCGCCAAACGTGTTTGAGAGAGTAAAAGAGGAGATTGAGGCTCTGGTTGAAACGATTCACCCGAAGAAAGAGTCACAAATGTATGAAAGGAAGTTTTTATTCACTTATTGTGCAACTAAACTTTTAGGTTATAATTTCGTTAACTTTGACATTGGACTTGTGTAAATGGTAAAATCAAGATATTGCTTCAATAGGAAACAGTTGACCTTCTTTATAAATTTGTATAACTAGATTTCAATATTTATTGCTAGGTTTCGGCGTTCTTATGTTACTTGATTTTGTTCTTGGATTTAGGAGTTTATGTGGCTGAGTATGCGTTTTCCCACTAGATTTTGGATGTTTGGCGTTGGATCTTAGATGTTTTATGAATTGGTTTTAGGTCAACTTCTAGTTTTATTTCAAAGATGGTCTACTTATTCATGTTCAGAATTCAATTTAATGAAACTAAAATGAGCTTTTCATATATACATATATAAATCCTCGTGTTGTTTTCTGGTCGCAGGGATGAAGCTTCAGCAACGGATTCCATCGAAGAGAAAACAGAGTTCCTATTAGGTGGATTCTTTGTTTCTTATCATATTAGATTTTGCAATTCTGCAGTTGTATTCATATCTTTCTGCTTCCCTCTTTGTAAACTAGCTTATCTTGTTCATAAACAATGTGGACAAGATGGGAGATTGATTTATAAAAAGCCTCTAGACAGAAATAATTATGGAGTTTATCTTCTTCTTGTGTGTATGGATCAGATAGCACAGCGAAAGCAGCAAAAGTGATAGAAAGAGCAAAGGACGAGATTGAGAAGATATGGCACATTAAGAAGTCAAAAGAAACCCATGGCCATCGTGATGATATAGGAGAAGATACTCCAATAGATGAAGTCAAAGCTCCAAATTTATTTGAGCGGGCAGCAGAAGAATATCAGGCCCTTATCCAAACGATTCACTCTAAGTAAGAATCTCAGACATGGGATAAAAGGTTTTAATTGATTGTTTTTAATTAGTTTAGGTTGAGTAGTTATGAGATACGTTTAGTTTTCTTTCTAAATTATCTCATTTACTGCAATTCTTTTGAAGGAATGAAATTACCAATGCTGCATCTATTCTGAAGGAAGCAATGCCTCTCCCAGGTAATACAGTTTTCAAATTTGCATTCTTAGAGTTCTCCAAAGATACTGTTTATTTATGCTCTATTATAACTTTTGACCATGGTACTCTGGTTTTTTGAGATCCAACATCGGTTGGGGGGGAGAATTGAGCATTTTTTATAAGAGTGTAGAAACTTCTTCCTAGCAGGCGTGTTTTGAAATTTTTGAGGAAAAGCTTGAAAGGGAAAGCCCAAAAAAGACAATATTTCCTAGCGGTGGGTTTGGGTTGTTACAAATGGTATTAGAGCCCGACACTGGGTGGTGAGCCCCGAAGAGAGTGGACACTAGGCGATGTGCCAGTGAGAACGTTAGACCCCAAAGATGGGGGATTGTGAGATCCCACATCGATTGGAGAGGAGAACGAGTGTCAACGAGGACACTAGGCCTTGAAGGGGGGTGGATTGTGAGATCCCACATTGATTGGAGAGGAGGACGCGAGTGTTAACGAGGACACTAGGCCTAGAAGGGGGTGGATTGTGAGATCCCACGTTGGTTAGGGAGGAGAATGAAGCATTCTTTATACGGGTGTGGAAACCTCTCTCTATTAGAAGCATTTTAAAAACTTTGAAAGAAAGCCCGAAGGTTCCACATTAATTGGCCACTGGTTCACATTTATGGAAGATCCAAGTACAAGTAGATCCTCCAAGTTGTTGTTGCCTGATTGCCAGCAACTTGGTGTTTTCTTAGTATTACTGATCAATTACTTGTTTTATTCTAATGTAAAACAAAGTTGCAGCTATTTTGCTTCTAATGAGTTTCTTCGTGCGACAAATGATGCAGAAATGAGTTCAAATGAGAAAATGCCAATCAATGAAGTGAAAGGGCCAAATATTTTTGAGAGAGCAGAAGATGAAATGGAGGCACTTGTTCAAGGCATCCATGATAAGAAGGAAACTGATTCGCCAGGAAAAGAAGGATTTCTGTCAAAACTGGGAAATTGTTTGGAAATAATATGCTCTCCTTCAAAAAAGAAAGATGATTAAACCCCAAAGCAAGAATTTGACAATCAAGAATGATGGTTTGTTTTCTAATATTTTTCATCTGTGTATTGTTCGATTACTACACGAATGTTTGTAAGTCATCCACTTGTATTTCTGCATTATTGTATTACAGGAGCTTTGTACATTTCCATTTTGGGAACGAATGTATATCCTTTATAACTTTGTAATCTGGAGTTTGTAAGTTGTAATAAAAAAAAATGTTGGCAGTGGGTTTGAATGTTTAAA

mRNA sequence

AGGAAGACAGCACACAGATTGTGGGCAGGGCCCCAACGAACGCTCTGTCCAATCTGTCATTTCCGCTGCCGGCGCTCCTCTGTTCGAACCCTTTCTTTTCTACCCTTCATCTTCTCAGTTCTTTGCATTCTATTCCATTTCCAGAGTCGATATGGCAGAATCCTCACCAGACCGGTCGTCTCCCCCTCTTTCATCCGAAAATTTGCAGACAGATGAATCGCCTGCTCATCACAAGGAGACTCATGGAAGACGTGATGATATTGACGAGAATACCTCGTTGGATGAAGTCGCCAAACGTGTTTGAGAGAGTAAAAGAGGAGATTGAGGCTCTGGTTGAAACGATTCACCCGAAGAAAGAGTCACAAATGGATGAAGCTTCAGCAACGGATTCCATCGAAGAGAAAACAGAGTTCCTATTAGATAGCACAGCGAAAGCAGCAAAAGTGATAGAAAGAGCAAAGGACGAGATTGAGAAGATATGGCACATTAAGAAGTCAAAAGAAACCCATGGCCATCGTGATGATATAGGAGAAGATACTCCAATAGATGAAGTCAAAGCTCCAAATTTATTTGAGCGGGCAGCAGAAGAATATCAGGCCCTTATCCAAACGATTCACTCTAAGAATGAAATTACCAATGCTGCATCTATTCTGAAGGAAGCAATGCCTCTCCCAGAAATGAGTTCAAATGAGAAAATGCCAATCAATGAAGTGAAAGGGCCAAATATTTTTGAGAGAGCAGAAGATGAAATGGAGGCACTTGTTCAAGGCATCCATGATAAGAAGGAAACTGATTCGCCAGGAAAAGAAGGATTTCTGTCAAAACTGGGAAATTGTTTGGAAATAATATGCTCTCCTTCAAAAAAGAAAGATGATTAAACCCCAAAGCAAGAATTTGACAATCAAGAATGATGGTTTGTTTTCTAATATTTTTCATCTGTGTATTGTTCGATTACTACACGAATGTTTGTAAGTCATCCACTTGTATTTCTGCATTATTGTATTACAGGAGCTTTGTACATTTCCATTTTGGGAACGAATGTATATCCTTTATAACTTTGTAATCTGGAGTTTGTAAGTTGTAATAAAAAAAAATGTTGGCAGTGGGTTTGAATGTTTAAA

Coding sequence (CDS)

ATGAATCGCCTGCTCATCACAAGGAGACTCATGGAAGACGTGATGATATTGACGAGAATACCTCGTTGGATGAAGTCGCCAAACGTGTTTGAGAGAGTAAAAGAGGAGATTGAGGCTCTGGTTGAAACGATTCACCCGAAGAAAGAGTCACAAATGGATGAAGCTTCAGCAACGGATTCCATCGAAGAGAAAACAGAGTTCCTATTAGATAGCACAGCGAAAGCAGCAAAAGTGATAGAAAGAGCAAAGGACGAGATTGAGAAGATATGGCACATTAAGAAGTCAAAAGAAACCCATGGCCATCGTGATGATATAGGAGAAGATACTCCAATAGATGAAGTCAAAGCTCCAAATTTATTTGAGCGGGCAGCAGAAGAATATCAGGCCCTTATCCAAACGATTCACTCTAAGAATGAAATTACCAATGCTGCATCTATTCTGAAGGAAGCAATGCCTCTCCCAGAAATGAGTTCAAATGAGAAAATGCCAATCAATGAAGTGAAAGGGCCAAATATTTTTGAGAGAGCAGAAGATGAAATGGAGGCACTTGTTCAAGGCATCCATGATAAGAAGGAAACTGATTCGCCAGGAAAAGAAGGATTTCTGTCAAAACTGGGAAATTGTTTGGAAATAATATGCTCTCCTTCAAAAAAGAAAGATGATTAA

Homology

[Close]

BLAST of CmoCh06G010390 vs. TrEMBL
Match: A0A0A0L8K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119590 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.9e-62
Identity = 137/204 (67.16%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKESQMDEASATDSIEEKTEFLLDSTAKAAKVIERAK 83
           +K+PNVFERVKEEIEALV+TI  K     D+  A +S E+KTE   D T  AAKV+ RAK
Sbjct: 46  VKAPNVFERVKEEIEALVQTIQAK-----DDTVAAESKEDKTESQSDGTVIAAKVLGRAK 105

Query: 84  DEIEKIWHIKKSKETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIHSKNEITN- 143
           DEIEK+ HI K+KETHG RDDIGEDTP++EVKAPNL ERA EEY+A +QTI+S  E  + 
Sbjct: 106 DEIEKMLHINKTKETHGQRDDIGEDTPLNEVKAPNLLERAVEEYEAFMQTINSNKESVSD 165

Query: 144 -----AASILKEAMPLPEMSSNEKMPINEVKGPNIFERAEDEMEALVQGIHDKKETDSPG 203
                 AS+ KEAM L E+SSNEK+PIN V GPNI ERA+DEMEALV  IH KKETDS  
Sbjct: 166 KRDEIVASMQKEAMLLSEISSNEKIPINGVMGPNILERAKDEMEALVHTIHPKKETDSLA 225

Query: 204 KEGFLSKLGNCLEIICSPSKKKDD 222
           KEGFL KLG CLEIICSPSKKKDD
Sbjct: 226 KEGFLMKLGKCLEIICSPSKKKDD 244

[Close]

BLAST of CmoCh06G010390 vs. TrEMBL
Match: A0A061GLW8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037632 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.8e-29
Identity = 87/184 (47.28%), Postives = 116/184 (63.04%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKES-----QMDEASATDSIEEKTEFLLDSTAKAAKV 83
           +K+PNVFER KEEIEALVETIH KKES     + D ++  +   EK E    + AKA  +
Sbjct: 63  VKAPNVFERAKEEIEALVETIHHKKESHTHDDERDHSTKAELNHEKPE----NGAKAPNL 122

Query: 84  IERAKDEIEKIWHIKK---SKETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIH 143
           IERAK+EIE + H  K    KETHG R+DI E+TP+D+VKAPN+FERA EE +AL++TIH
Sbjct: 123 IERAKEEIEAVIHTGKVHFHKETHGKRNDIDENTPLDDVKAPNVFERAKEEIEALVETIH 182

Query: 144 SKNEITNAASILKEAMPLPEMSSNEKMPINEVKGPNIFERAEDEMEALVQGIHDKKETDS 200
            K E          +   P+  S  K P N ++ PN+ ERA++E+EA+   +H +K    
Sbjct: 183 HKKESHTHDDKRDHS---PKAESKHKKPGNGIEAPNLTERAKEEIEAI---LHHEKSPHQ 236

[Close]

BLAST of CmoCh06G010390 vs. TrEMBL
Match: F6HGQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01980 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 71/131 (54.20%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKESQMDEASATDSIEEKTEFLLDSTAKAAKVIERAK 83
           +K+PNVFER KEEIEALV+TIHPKKES++   ++T           ++  KA  +IERAK
Sbjct: 123 VKAPNVFERAKEEIEALVQTIHPKKESEIHVPASTGE---------ENDVKAPDLIERAK 182

Query: 84  DEIEKIWHIKKS-----KETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIHSKN 143
           +EIE I H KKS     +ETHG  DDI E+TPIDEVK P++F+RA EE +AL QTIH K 
Sbjct: 183 EEIEAIMHTKKSPPHHHEETHGMSDDIDENTPIDEVKGPSVFQRAKEELEALAQTIHPKK 242

Query: 144 EITNAASILKE 150
           E ++  S  KE
Sbjct: 243 EPSDLVSSPKE 244

[Close]

BLAST of CmoCh06G010390 vs. TrEMBL
Match: A0A022QF68_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014497mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 74/134 (55.22%), Postives = 86/134 (64.18%), Query Frame = 1


Query: 7   TRRLMEDVMILTRIPRWMKSPNVFERVKEEIEALVETIHPKKESQMDEASATDSIEEKTE 66
           T  L ED+   T +   +K+PNVFER KEEIEALVE IHPKKES      A  S  EK+E
Sbjct: 32  THGLREDIDANTPMSD-VKAPNVFERAKEEIEALVEAIHPKKES------AKSSKSEKSE 91

Query: 67  FLLDSTAKAAKVIERAKDEIEKIWHIKKS-KETHGHRDDIGEDTPIDEVKAPNLFERAAE 126
              +  AKAA    +AK+EIE + H     KETHG   DI EDTPI EVK PN+FERA E
Sbjct: 92  PYSEKDAKAANKTVKAKEEIETVGHKPNHRKETHGMSFDIDEDTPISEVKGPNVFERAKE 151

Query: 127 EYQALIQTIHSKNE 140
           E +ALIQTIH K +
Sbjct: 152 EIEALIQTIHPKKD 158

[Close]

BLAST of CmoCh06G010390 vs. TrEMBL
Match: A0A059CMT5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00871 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKES----QMDEASATDSIEEKTEFLLDSTAKAAKVI 83
           +K+PNVFER KEEIEALV+TIH KKES    + D+   T+S    +    ++  K    I
Sbjct: 56  VKAPNVFERAKEEIEALVQTIHLKKESPTREKRDQTVQTESSASGSPSA-ENDGKGPNFI 115

Query: 84  ERAKDEIEKIWHIKKS-----KETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTI 143
           E+AK EIE I H KKS     KETHG  +DI E+TPIDEVKAPN+FERA EE +A+ Q I
Sbjct: 116 EKAKQEIEGIMHFKKSPRHHRKETHGLNEDIDENTPIDEVKAPNVFERAKEEIEAIAQAI 175

Query: 144 HSKNEITNAA 145
           H K E +N A
Sbjct: 176 HPKKESSNDA 184

[Close]

BLAST of CmoCh06G010390 vs. TAIR10
Match: AT5G57000.1 (AT5G57000.1 unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 4.1e-18
Identity = 51/124 (41.13%), Postives = 81/124 (65.32%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKESQMDEASATDSIEEKTEFLLDSTAKAAKVIERAK 83
           +K+PN+FER KEE++A++  IH +K S+       D +E K++   D   K   ++++A+
Sbjct: 28  VKAPNMFERAKEELDAVIGAIHQRKSSK-------DKMEFKSDKPEDGKKKP-NMLKKAR 87

Query: 84  DEIEKIWHIKKS--------KETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIH 140
           ++++ ++  +K         KETHG  DDI E+TP+DEVKAPN+ ERA EE +A+I TIH
Sbjct: 88  EDLKSLFLKEKPPRHLHHHHKETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIH 143

[Close]

BLAST of CmoCh06G010390 vs. TAIR10
Match: AT1G72690.1 (AT1G72690.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1


Query: 70  DSTAKAAKVIERAKDEIEKIWHIKKSK------ETHGHRDDIGEDTPIDEVKAPNLFERA 129
           + T K+  V ER K+EIE + H +KSK      ETHG  DDI E TPID VK P  F+R 
Sbjct: 9   EKTVKSPNVFERVKEEIEAMGHHEKSKSRHHDKETHGTSDDIDESTPIDYVKGPGFFQRL 68

Query: 130 AEEYQALIQTIHSK 138
            EE +A+   +  K
Sbjct: 69  KEEIEAIFNAVTPK 82

[Close]

BLAST of CmoCh06G010390 vs. NCBI nr
Match: gi|449432046|ref|XP_004133811.1| (PREDICTED: uncharacterized protein LOC101209332 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 5.6e-62
Identity = 137/204 (67.16%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKESQMDEASATDSIEEKTEFLLDSTAKAAKVIERAK 83
           +K+PNVFERVKEEIEALV+TI  K     D+  A +S E+KTE   D T  AAKV+ RAK
Sbjct: 46  VKAPNVFERVKEEIEALVQTIQAK-----DDTVAAESKEDKTESQSDGTVIAAKVLGRAK 105

Query: 84  DEIEKIWHIKKSKETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIHSKNEITN- 143
           DEIEK+ HI K+KETHG RDDIGEDTP++EVKAPNL ERA EEY+A +QTI+S  E  + 
Sbjct: 106 DEIEKMLHINKTKETHGQRDDIGEDTPLNEVKAPNLLERAVEEYEAFMQTINSNKESVSD 165

Query: 144 -----AASILKEAMPLPEMSSNEKMPINEVKGPNIFERAEDEMEALVQGIHDKKETDSPG 203
                 AS+ KEAM L E+SSNEK+PIN V GPNI ERA+DEMEALV  IH KKETDS  
Sbjct: 166 KRDEIVASMQKEAMLLSEISSNEKIPINGVMGPNILERAKDEMEALVHTIHPKKETDSLA 225

Query: 204 KEGFLSKLGNCLEIICSPSKKKDD 222
           KEGFL KLG CLEIICSPSKKKDD
Sbjct: 226 KEGFLMKLGKCLEIICSPSKKKDD 244

[Close]

BLAST of CmoCh06G010390 vs. NCBI nr
Match: gi|659074979|ref|XP_008437898.1| (PREDICTED: uncharacterized protein LOC103483189 [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 8.1e-61
Identity = 134/205 (65.37%), Postives = 158/205 (77.07%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKESQMDEASATDSIEEKTEFLLDSTAKAAKVIERAK 83
           +K+PNVFER+KEEIEALV+TI  K     D++ A +S E+KT+   D +  AAKV  RAK
Sbjct: 46  VKAPNVFERMKEEIEALVQTIQAK-----DDSVAAESKEDKTDSQSDGSVIAAKVFGRAK 105

Query: 84  DEIEKIWHIKKSKETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIHSKNEIT-- 143
           DEI K+ HI K+KETHG RDDIGEDTP++EVKAPNL ERA EEY+A +QTI+SK E    
Sbjct: 106 DEIGKMLHINKTKETHGQRDDIGEDTPLNEVKAPNLLERAVEEYEAFMQTINSKKESQTS 165

Query: 144 -----NAASILKEAMPLPEMSSNEKMPINEVKGPNIFERAEDEMEALVQGIHDKKETDSP 203
                N AS+ KEAMPL E+SSN  +PINEV GPNIFERA+DEMEALV  IH KKETDS 
Sbjct: 166 DKRDENVASMQKEAMPLSEISSNLIIPINEVMGPNIFERAKDEMEALVHTIHPKKETDSL 225

Query: 204 GKEGFLSKLGNCLEIICSPSKKKDD 222
            KEGFL+KLG CLEIICSPSK+KD+
Sbjct: 226 AKEGFLTKLGKCLEIICSPSKEKDN 245

[Close]

BLAST of CmoCh06G010390 vs. NCBI nr
Match: gi|590575805|ref|XP_007012789.1| (Uncharacterized protein TCM_037632 [Theobroma cacao])

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 87/184 (47.28%), Postives = 116/184 (63.04%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKES-----QMDEASATDSIEEKTEFLLDSTAKAAKV 83
           +K+PNVFER KEEIEALVETIH KKES     + D ++  +   EK E    + AKA  +
Sbjct: 63  VKAPNVFERAKEEIEALVETIHHKKESHTHDDERDHSTKAELNHEKPE----NGAKAPNL 122

Query: 84  IERAKDEIEKIWHIKK---SKETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIH 143
           IERAK+EIE + H  K    KETHG R+DI E+TP+D+VKAPN+FERA EE +AL++TIH
Sbjct: 123 IERAKEEIEAVIHTGKVHFHKETHGKRNDIDENTPLDDVKAPNVFERAKEEIEALVETIH 182

Query: 144 SKNEITNAASILKEAMPLPEMSSNEKMPINEVKGPNIFERAEDEMEALVQGIHDKKETDS 200
            K E          +   P+  S  K P N ++ PN+ ERA++E+EA+   +H +K    
Sbjct: 183 HKKESHTHDDKRDHS---PKAESKHKKPGNGIEAPNLTERAKEEIEAI---LHHEKSPHQ 236

[Close]

BLAST of CmoCh06G010390 vs. NCBI nr
Match: gi|225444877|ref|XP_002281464.1| (PREDICTED: uncharacterized protein LOC100256150 [Vitis vinifera])

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 71/131 (54.20%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKESQMDEASATDSIEEKTEFLLDSTAKAAKVIERAK 83
           +K+PNVFER KEEIEALV+TIHPKKES++   ++T           ++  KA  +IERAK
Sbjct: 123 VKAPNVFERAKEEIEALVQTIHPKKESEIHVPASTGE---------ENDVKAPDLIERAK 182

Query: 84  DEIEKIWHIKKS-----KETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTIHSKN 143
           +EIE I H KKS     +ETHG  DDI E+TPIDEVK P++F+RA EE +AL QTIH K 
Sbjct: 183 EEIEAIMHTKKSPPHHHEETHGMSDDIDENTPIDEVKGPSVFQRAKEELEALAQTIHPKK 242

Query: 144 EITNAASILKE 150
           E ++  S  KE
Sbjct: 243 EPSDLVSSPKE 244

[Close]

BLAST of CmoCh06G010390 vs. NCBI nr
Match: gi|702292647|ref|XP_010047543.1| (PREDICTED: uncharacterized protein LOC104436465 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 70/130 (53.85%), Postives = 87/130 (66.92%), Query Frame = 1


Query: 24  MKSPNVFERVKEEIEALVETIHPKKES----QMDEASATDSIEEKTEFLLDSTAKAAKVI 83
           +K+PNVFER KEEIEALV+TIH KKES    + D+   T+S    +  + ++  K    I
Sbjct: 56  VKAPNVFERAKEEIEALVQTIHLKKESPTREKRDQTVQTESSASGSPSVAENDGKGPNFI 115

Query: 84  ERAKDEIEKIWHIKKS-----KETHGHRDDIGEDTPIDEVKAPNLFERAAEEYQALIQTI 143
           E+AK EIE I H KKS     KETHG  +DI E+TPIDEVKAPN+FERA EE +A+ Q I
Sbjct: 116 EKAKQEIEGIMHFKKSPRHHRKETHGLNEDIDENTPIDEVKAPNVFERAKEEIEAIAQAI 175

Query: 144 HSKNEITNAA 145
           H K E +N A
Sbjct: 176 HPKKESSNDA 185

The following BLAST results are available for this feature:

BLAST of CmoCh06G010390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G010390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8K5_CUCSA	3.9e-62	67.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119590 PE=4 SV=1	[more]
A0A061GLW8_THECC	9.8e-29	47.28	Uncharacterized protein OS=Theobroma cacao GN=TCM_037632 PE=4 SV=1	[more]
F6HGQ6_VITVI	1.5e-24	54.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01980 PE=4 SV=...	[more]
A0A022QF68_ERYGU	2.3e-22	55.22	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014497mg PE=4 SV=1	[more]
A0A059CMT5_EUCGR	3.0e-22	53.85	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00871 PE=4 SV=1	[more]

BLAST of CmoCh06G010390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57000.1	4.1e-18	41.13	unknown protein	[more]
AT1G72690.1	5.3e-10	45.95	unknown protein	[more]

BLAST of CmoCh06G010390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432046\|ref\|XP_004133811.1\|	5.6e-62	67.16	PREDICTED: uncharacterized protein LOC101209332 [Cucumis sativus]	[more]
gi\|659074979\|ref\|XP_008437898.1\|	8.1e-61	65.37	PREDICTED: uncharacterized protein LOC103483189 [Cucumis melo]	[more]
gi\|590575805\|ref\|XP_007012789.1\|	1.4e-28	47.28	Uncharacterized protein TCM_037632 [Theobroma cacao]	[more]
gi\|225444877\|ref\|XP_002281464.1\|	2.1e-24	54.20	PREDICTED: uncharacterized protein LOC100256150 [Vitis vinifera]	[more]
gi\|702292647\|ref\|XP_010047543.1\|	1.4e-23	53.85	PREDICTED: uncharacterized protein LOC104436465 isoform X1 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G010390.1	CmoCh06G010390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 173..193 scor
None	No IPR available	PANTHER	PTHR35277	FAMILY NOT NAMED	coord: 24..145 score: 1.6
None	No IPR available	PANTHER	PTHR35277:SF2	SUBFAMILY NOT NAMED	coord: 24..145 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G010390	Cucsa.259210	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G010390	Cla021158	Watermelon (97103) v1	cmowmB793
CmoCh06G010390	Csa3G119590	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G010390	MELO3C006025	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G010390	ClCG05G000830	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G010390	CSPI03G07950	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G010390	Lsi05G021220	Bottle gourd (USVL1VR-Ls)	cmolsiB758
CmoCh06G010390	Cp4.1LG08g00840	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G010390	MELO3C006025.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G010390	CsaV3_3G008070	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G010390	Cla97C05G080990	Watermelon (97103) v2	cmowmbB833
CmoCh06G010390	Bhi01G000351	Wax gourd	cmowgoB1013
CmoCh06G010390	CsGy3G008080	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G010390	Carg20894	Silver-seed gourd	carcmoB1332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G010390	Watermelon (97103) v2	cmowmbB810
CmoCh06G010390	Wax gourd	cmowgoB1002
CmoCh06G010390	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G010390	Cucurbita maxima (Rimu)	cmacmoB022
CmoCh06G010390	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G010390	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G010390	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G010390	Melon (DHL92) v3.6.1	cmomedB836
CmoCh06G010390	Silver-seed gourd	carcmoB0171
CmoCh06G010390	Cucumber (Chinese Long) v3	cmocucB0976