CmoCh06G009190 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G009190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr06 : 6530444 .. 6533332 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTTTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCAAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCGAGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCTTTGTTCTGTTCCAGTTATTCTTGTACCTAAGAAAGATGGTTCTTGGCGTATGTGTATTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCACATGCATATTGGGGATGAGTGGAAAACAGCTTTTAAAACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAACCATATCTTACGAGAATACTTAGGTAAGTTTGTGGTTGTTTCATGACATTCTTGTTTACTCTAAATGTTTAGATGATCATATTACCCATGTACGCAATGTTTTGACTACTTTAAGAAACGAATGTTTGTACGTAAATTTAAAGAAATGTAGCTTTTGCATGGAAAAAGTTAACTTTCTTGGGTTTGTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACACTAAAAAATGTAAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAGAATTTTAGTACAATTGCTTCACCCCTGAATGAGCTTGTTAAGATAAATGTATCTTTTATATGGGGAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGCAAAATCAAAGACCCTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGTTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACAACATGCTAAGTGGTTAGAATTTATTGAAACATTCCAGTATGTCATAAAATATAAACAAGATAAGGAGAACATTGTAGCAGATGCTTTATCCCGAAGGTATGTCCTCCTCAATACTTTGAATGTTAGGTTGTTGAGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATAGCACACCATGGAGTTTCTAAAACTTATGATATTCTCCCTAAACATTTTTTTTTTGGCCTAAAATGAGACATGATGTTCATAAAATTTGTGCTCATTGCATAGCATATAAACAAGCTAAGTCTAGGCTTCAACCACATGGTTTATACTCCCCATTACTAGTTCCTAATGGTCCATGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATAGCATTTTTGTTGTGGTTGATAGATTTAGTAAAATGGCTCATTTTATTCCTTGTCACAAAACTAATGATGCAAAACATATTGCTGACTTGTTCTTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTAGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAAAAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCATAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATATCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAAAACAAATTGAGAAACAAAATTTCAAGGTTGCCACCCGAATTAAAAAAGGACGTAAGATTGCCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCGAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCACATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTATGGTGTTAGTGCAACTTTTAATGTTGTTGATTTGAGCCATTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAAGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTTTATACATTTATATTCAAGCTATGGTGAGCTCATCAAAGAAAATTCTAGAAGACGCTGGAGACCTCCTTTATATGTTGTGCAAAGTTGAGGTTCAAGAAAGAGATGAATTAAATGCACTTTAA

mRNA sequence

ATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTTTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCAAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCGAGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCTTTGTTCTGTTCCAGTTATTCTTGTACCTAAGAAAGATGGTTCTTGGCGTATGTGTATTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCACATGCATATTGGGGATGAGTGGAAAACAGCTTTTAAAACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAACCATATCTTACGAGAATACTTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACACTAAAAAATATAAATGTATCTTTTATATGGGGAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGCAAAATCAAAGACCCTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGTTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACAACATGCTAAGTGGTTAGAATTTATTGAAACATTCCAGTATGTCATAAAATATAAACAAGATAAGGAGAACATTGTAGCAGATGCTTTATCCCGAAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTAGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAAAAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCATAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATATCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAAAACAAATTGAGAAACAAAATTTCAAGGTTGCCACCCGAATTAAAAAAGGACGTAAGATTGCCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCGAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCACATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTATGGTGTTAGTGCAACTTTTAATGTTGTTGATTTGAGCCATTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAAGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTTTATACATTTATATTCAAGCTATGGTGAGCTCATCAAAGAAAATTCTAGAAGACGCTGGAGACCTCCTTTATATGTTGTGCAAAGTTGAGGTTCAAGAAAGAGATGAATTAAATGCACTTTAA

Coding sequence (CDS)

ATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTTTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCAAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCGAGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCTTTGTTCTGTTCCAGTTATTCTTGTACCTAAGAAAGATGGTTCTTGGCGTATGTGTATTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCACATGCATATTGGGGATGAGTGGAAAACAGCTTTTAAAACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAACCATATCTTACGAGAATACTTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACACTAAAAAATATAAATGTATCTTTTATATGGGGAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGCAAAATCAAAGACCCTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGTTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACAACATGCTAAGTGGTTAGAATTTATTGAAACATTCCAGTATGTCATAAAATATAAACAAGATAAGGAGAACATTGTAGCAGATGCTTTATCCCGAAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTAGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAAAAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCATAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATATCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAAAACAAATTGAGAAACAAAATTTCAAGGTTGCCACCCGAATTAAAAAAGGACGTAAGATTGCCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCGAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCACATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTATGGTGTTAGTGCAACTTTTAATGTTGTTGATTTGAGCCATTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAAGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTTTATACATTTATATTCAAGCTATGGTGAGCTCATCAAAGAAAATTCTAGAAGACGCTGGAGACCTCCTTTATATGTTGTGCAAAGTTGAGGTTCAAGAAAGAGATGAATTAAATGCACTTTAA
Homology
[Close]
BLAST of CmoCh06G009190 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 3.9e-37
Identity = 77/180 (42.78%), Postives = 108/180 (60.00%), Query Frame = 1 

Query: 23  LLQEFEDLFSKEMPSSLPPLRGI--EHKIDFIPGEPIPNRPAYRTNPKEAEEIQRQVSEL 82
           L Q++ ++   ++P     +  I  +H I+  PG  +P    Y    K  +EI + V +L
Sbjct: 586 LQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKL 645

Query: 83  LAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPRLDDMLDELHGC 142
           L   ++  S S CS PV+LVPKKDG++R+C+D R +NK TI    P+PR+D++L  +   
Sbjct: 646 LDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNA 705

Query: 143 SLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHILRE 201
            +FT +DL SGYHQI M   D +KTAF T  G YE+ VMPFGL NAPSTF R M    R+
Sbjct: 706 QIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD 765

[Close]
BLAST of CmoCh06G009190 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 157.9 bits (398), Expect = 3.9e-37
Identity = 77/180 (42.78%), Postives = 108/180 (60.00%), Query Frame = 1 

Query: 23  LLQEFEDLFSKEMPSSLPPLRGI--EHKIDFIPGEPIPNRPAYRTNPKEAEEIQRQVSEL 82
           L Q++ ++   ++P     +  I  +H I+  PG  +P    Y    K  +EI + V +L
Sbjct: 560 LQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKL 619

Query: 83  LAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPRLDDMLDELHGC 142
           L   ++  S S CS PV+LVPKKDG++R+C+D R +NK TI    P+PR+D++L  +   
Sbjct: 620 LDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNA 679

Query: 143 SLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHILRE 201
            +FT +DL SGYHQI M   D +KTAF T  G YE+ VMPFGL NAPSTF R M    R+
Sbjct: 680 QIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD 739

[Close]
BLAST of CmoCh06G009190 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-30
Identity = 93/265 (35.09%), Postives = 141/265 (53.21%), Query Frame = 1 

Query: 10  NMLNPSLPSDFF--------------VLLQEFEDLFSKEMPSSLPPLRGIEHKIDFIPGE 69
           N ++P L SD +               LLQ++ D+   E    L      +H I+     
Sbjct: 149 NKISPILESDLYRLEHLNNEEKQRLCALLQKYHDIQYHE-GDKLTFTNQTKHTINTKHNL 208

Query: 70  PIPNRPAYRTNPKEAE-EIQRQVSELLAKGYVRESLSLCSVPVILVPKKDGS-----WRM 129
           P+ ++ +Y   P+  E E++ Q+ ++L +G +R S S  + P+ +VPKK  +     +R+
Sbjct: 209 PLYSKYSY---PQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRI 268

Query: 130 CIDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIHMHIGDEWKTAFKT 189
            ID R +N+IT+  RHPIP +D++L +L  C+ FT IDL  G+HQI M      KTAF T
Sbjct: 269 VIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFST 328

Query: 190 KYGLYEWLVMPFGLTNAPSTFMRLMNHILREYLVSSNGVEVDEEKVKAIKDWPTLKNINV 249
           K+G YE+L MPFGL NAP+TF R MN ILR  L     V +D+  V +      L+++ +
Sbjct: 329 KHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGL 388

Query: 250 SFIWGKDQELAFNTLKEKLSSAPLL 255
            F     ++LA   LK +L     L
Sbjct: 389 VF-----EKLAKANLKLQLDKCEFL 404

[Close]
BLAST of CmoCh06G009190 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.6e-30
Identity = 78/230 (33.91%), Postives = 131/230 (56.96%), Query Frame = 1 

Query: 14  PSLPSDFFVLLQEFEDLFSKEMPSSLP-PLRGIEHKIDFIPGE---PIPNRPAYRTNPKE 73
           P LP     + +EF+D+ ++     LP P++G+E +++        PI N P     P +
Sbjct: 372 PELPD----IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPL---PPGK 431

Query: 74  AEEIQRQVSELLAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPR 133
            + +  ++++ L  G +RES ++ + PV+ VPKK+G+ RM +D + +NK      +P+P 
Sbjct: 432 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 491

Query: 134 LDDMLDELHGCSLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 193
           ++ +L ++ G ++FTK+DLKS YH I +  GDE K AF+   G++E+LVMP+G++ AP+ 
Sbjct: 492 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 551

Query: 194 FMRLMNHILREYLVSSNGVEVDE---------EKVKAIKD-WPTLKNINV 230
           F   +N IL E   S     +D+         E VK +KD    LKN N+
Sbjct: 552 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANL 594

[Close]
BLAST of CmoCh06G009190 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.6e-30
Identity = 78/230 (33.91%), Postives = 131/230 (56.96%), Query Frame = 1 

Query: 14  PSLPSDFFVLLQEFEDLFSKEMPSSLP-PLRGIEHKIDFIPGE---PIPNRPAYRTNPKE 73
           P LP     + +EF+D+ ++     LP P++G+E +++        PI N P     P +
Sbjct: 372 PELPD----IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPL---PPGK 431

Query: 74  AEEIQRQVSELLAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPR 133
            + +  ++++ L  G +RES ++ + PV+ VPKK+G+ RM +D + +NK      +P+P 
Sbjct: 432 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 491

Query: 134 LDDMLDELHGCSLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 193
           ++ +L ++ G ++FTK+DLKS YH I +  GDE K AF+   G++E+LVMP+G++ AP+ 
Sbjct: 492 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 551

Query: 194 FMRLMNHILREYLVSSNGVEVDE---------EKVKAIKD-WPTLKNINV 230
           F   +N IL E   S     +D+         E VK +KD    LKN N+
Sbjct: 552 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANL 594

[Close]
BLAST of CmoCh06G009190 vs. TrEMBL
Match: A5B004_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044169 PE=4 SV=1)

HSP 1 Score: 703.7 bits (1815), Expect = 2.1e-199
Identity = 389/723 (53.80%), Postives = 462/723 (63.90%), Query Frame = 1 

Query: 21  FVLLQ--EFEDLFSKEMPSSLPPLRGIEHKIDFIPGEPIPNRPAYRTNPKEAEEIQRQVS 80
           FVLL   E+ED+F  ++PS LPP+RGIEH+IDF+ G  IPNRPAY++NP+E  E+QRQV 
Sbjct: 29  FVLLYKYEYEDVFPNDVPSELPPIRGIEHQIDFVLGATIPNRPAYKSNPEETTELQRQVE 88

Query: 81  ELLAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPRLDDMLDELH 140
           ELL KG+VRES+S C++PV+LVPKKDG+WRMC+D +AIN I +KYRHPI RLDDMLDELH
Sbjct: 89  ELLTKGHVRESMSPCAMPVLLVPKKDGTWRMCVDFKAINNIMVKYRHPILRLDDMLDELH 148

Query: 141 GCSLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHIL 200
           G  +FTKIDLKS YHQI M  GDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMN  L
Sbjct: 149 GSCVFTKIDLKSRYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNDAL 208

Query: 201 RE---------------------------------------------YLVSSNGVEVDEE 260
           R                                              Y+VS+ G+EVDEE
Sbjct: 209 RAFIGRFVVVYFDDILVYSKNLDEHINHLHCVLIKCSFCMDKVVFLGYVVSAKGIEVDEE 268

Query: 261 KVKAIKDWPTLKNIN--------VSFI--WGKD--------QELAFNTLKEKLSSAPLLA 320
           KVKAIK+WPT  +I          SF   + KD         E+    +  KL  APLLA
Sbjct: 269 KVKAIKEWPTPMSITEVRSFHGLASFYRQFVKDFSTLAALVTEIVKKFVGFKLCGAPLLA 328

Query: 321 LPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKEFYALVRALQT 380
           LP+F  TFEIECDAS           ++P+ +FSEKL GA+L YP YDKE YALVRAL+T
Sbjct: 329 LPDFSKTFEIECDAS----------EKQPIAYFSEKLNGAALNYPKYDKELYALVRALET 388

Query: 381 WQHYLWPKEFIIHTDHESLKHLRVQNKLNRQHAKWLEFIETFQYVIKYKQDKENIVADAL 440
           WQHYLWPKEF+IH DHESLKHL+ Q KLNR+HAKW+EFIETF YVIKYKQ KENIVADAL
Sbjct: 389 WQHYLWPKEFVIHADHESLKHLKGQGKLNRRHAKWVEFIETFPYVIKYKQGKENIVADAL 448

Query: 441 SRREVVRLHGIPKSIVSDRDVKFLS-HFWRVLWGK-------LGTKLVYSTTCHPQTDGQ 500
           SRR          ++VS  + K L   +   L+          G        CH      
Sbjct: 449 SRRY---------ALVSTLNAKLLGFEYVEELYANDDDFANVYGASHEGGLICHFGVRET 508

Query: 501 TEVVKRTM--TAMLRAI--IDKNHKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPL 560
            +V+        M R +    KN K WEDCL FIEFAYNR VHS T  +PFEIVYGFNPL
Sbjct: 509 LDVLHEHFFWPKMKRDVERACKNLKNWEDCLSFIEFAYNRSVHSITNSSPFEIVYGFNPL 568

Query: 561 TPIDLLPISSKEFVNFDANAKVEFVHKLHKQVKKQIEKQNFKVATRIKKGRKIAIFKPGD 620
           TP+DLLP+   E  + D   K + V KLH+ V+K +EK+N + AT+  KGR+  IF+PGD
Sbjct: 569 TPLDLLPLQVNEMTSLDGEKKAKMVKKLHESVRKHMEKKNEQYATKANKGRRQVIFEPGD 628

Query: 621 WVWVHFRKERFPTRRKSKLLPRGDGPFQVLEHINDNAYKIDLPGKYGVSATFNVVDLSHF 664
           WVWVH RKERFPT R SKL PRGDG FQ           +DLPG+Y +SATFNV DLS F
Sbjct: 629 WVWVHMRKERFPTCRWSKLHPRGDGLFQ-----------LDLPGEYNISATFNVSDLSPF 688

[Close]
BLAST of CmoCh06G009190 vs. TrEMBL
Match: Q5MG92_IPOBA (Putative retrotransposon polyprotein OS=Ipomoea batatas PE=4 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 2.2e-140
Identity = 254/490 (51.84%), Postives = 324/490 (66.12%), Query Frame = 1 

Query: 201  YLVSSNGVEVDEEKVKAIKDWPTLKNI--------------------------------- 260
            ++VSS G+EVDE K++AI+DWPT K                                   
Sbjct: 862  FIVSSKGIEVDETKIQAIRDWPTPKTATKVRSFHGLASFYRRFVKDFSTIAAPLNELVKK 921

Query: 261  NVSFIWGKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 320
            +V F WG  QE AF TLKEKL SA +L+LPNF+ TFEIECDASG+GIGAVLMQ   P+ +
Sbjct: 922  DVKFEWGPKQEQAFQTLKEKLCSAQVLSLPNFDKTFEIECDASGIGIGAVLMQEGHPIAY 981

Query: 321  FSEKLTGASLRYPTYDKEFYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRQH 380
            FSEKL+G +L Y TYDKE YALVR L+TW+HYLW KEF+IH+DHE+LKHLR Q+      
Sbjct: 982  FSEKLSGPALNYSTYDKELYALVRTLETWEHYLWFKEFVIHSDHEALKHLRGQDLF---- 1041

Query: 381  AKWLEFIETFQYVIKYKQDKENIVADALSRREVVRLHGIPKSIVSDRDVKFLSHFWRVLW 440
                     F+ V++       IV+D                     D KFLSHFWR+LW
Sbjct: 1042 ---------FKEVVRLHGIPRTIVSDR--------------------DAKFLSHFWRILW 1101

Query: 441  GKLGTKLVYSTTCHPQTDGQTEVVKRTMTAMLRAIIDKNHKTWEDCLPFIEFAYNRVVHS 500
            GKLGTKL+YST CHPQTDGQTEVV RT+T +LR +I KN K+WE+ LP++EFAYNR +HS
Sbjct: 1102 GKLGTKLLYSTACHPQTDGQTEVVNRTLTQLLRVVIRKNLKSWEESLPYVEFAYNRAIHS 1161

Query: 501  TTKCTPFEIVYGFNPLTPIDLLPISSKEFVNFDANAKVEFVHKLHKQVKKQIEKQNFKVA 560
            TT  +PFE+ YGFNPLTP+DL+P+   +    DA  K + + + H +V+ QIEK+N + A
Sbjct: 1162 TTNMSPFEVAYGFNPLTPLDLIPLHVNDKECVDAAKKAQGIREFHSKVRAQIEKKNEQYA 1221

Query: 561  TRIKKGRKIAIFKPGDWVWVHFRKERFPTRRKSKLLPRGDGPFQVLEHINDNAYKIDLPG 620
             +  KGRK  IFKPGDWVW+H+ K RFP +RKSKL+PRGDGPFQVLE INDNAYK+DL G
Sbjct: 1222 QKANKGRKAIIFKPGDWVWIHYSKNRFPNQRKSKLMPRGDGPFQVLERINDNAYKLDLRG 1281

Query: 621  KYGVSATFNVVDLSHFDVGDGLDSRTNPSQEGENDMNHDQRISIP----QGPITRTRAKK 654
            ++ VS+TFNV DL+ FD     DS TN  QEGE+D    Q+I+ P     GP+TR++++K
Sbjct: 1282 EHSVSSTFNVADLAPFDFS---DSGTNLFQEGEDDETGMQQINDPLKVSSGPVTRSKSRK 1315

[Close]
BLAST of CmoCh06G009190 vs. TrEMBL
Match: Q7XWZ0_ORYSJ (OSJNBb0072N21.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0072N21.12 PE=4 SV=2)

HSP 1 Score: 449.9 bits (1156), Expect = 5.6e-123
Identity = 239/495 (48.28%), Postives = 306/495 (61.82%), Query Frame = 1 

Query: 201  YLVSSNGVEVDEEKVKAIKDWPT---------------------------------LKNI 260
            Y+V+  G+EVD+ KV+AI  WP                                  L   
Sbjct: 725  YVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKR 784

Query: 261  NVSFIWGKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 320
            NV+F W   Q  AF+TLK+KL+ APLL LP+F  TFE+ECDASG+G+G VL+Q  +P+ +
Sbjct: 785  NVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAY 844

Query: 321  FSEKLTGASLRYPTYDKEFYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRQH 380
            FSEKL+G SL Y TYDKE +ALVR L+TWQHYLWPKEF+IH+DHESLKH+R Q KLNR+H
Sbjct: 845  FSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRH 904

Query: 381  AKWLEFIETFQYVIKYKQDKENIVADALSRR---------EVVRLHGIPKSIVSDRDVKF 440
            AKW+EFIE+F YVIK+K+ KEN++A+ALSRR         ++  L  I +    D D K 
Sbjct: 905  AKWVEFIESFPYVIKHKKGKENVIANALSRRYTMLSQLDFKIFGLETIKEQYAHDDDFKD 964

Query: 441  LSHFWRVLWGKLGTKLVYSTTCH----PQTDGQTEVVKRTMTAMLRAIIDKNHKTWEDCL 500
             +H    L G  G K       +    P+     E          RA++ KN K WE+CL
Sbjct: 965  EAH-GGGLMGHFGVKKTEDILANHFFWPKMRRDVE----------RAVLKKNIKMWEECL 1024

Query: 501  PFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPISSKEFVNFDANAKVEFVHKLHKQ 560
            P +EF+YNR  HSTTK  PFEIVYG  P  PIDLLP+ + E VNFDA  + E + KLH+ 
Sbjct: 1025 PHVEFSYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKHRAELMLKLHET 1084

Query: 561  VKKQIEKQNFKVATRIKKGRKIAIFKPGDWVWVHFRKERFPTRRKSKLLPRGDGPFQVLE 620
             K+ IE+ N K      KG+K   F+PG+ VW+H RK+RFP  RKSKLLPR DGPF+VL+
Sbjct: 1085 TKENIERMNIKYKLAGSKGKKHVAFEPGNLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQ 1144

Query: 621  HINDNAYKIDLPGKYGVSATFNVVDLS-HFDVGDGLDSRTNPSQEGEND----MNHDQRI 645
             INDNAYK++LP  +GVS TFN+ DL  +    D L+SRT   QEGE+D     N     
Sbjct: 1145 KINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTTTP 1204

[Close]
BLAST of CmoCh06G009190 vs. TrEMBL
Match: Q7XRN3_ORYSJ (OSJNBa0024J22.19 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0024J22.19 PE=4 SV=2)

HSP 1 Score: 448.7 bits (1153), Expect = 1.2e-122
Identity = 246/501 (49.10%), Postives = 310/501 (61.88%), Query Frame = 1 

Query: 201  YLVSSNGVEVDEEKVKAIKDWPTLKNIN-------------------------------- 260
            Y+V+  G+EVD+ KV+AI+ WPT K ++                                
Sbjct: 842  YVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKK 901

Query: 261  -VSFIWGKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 320
             V F WG  QE AF+ LK+KL+ APLL LP+F  TFE+ECDASG+G+G VL+Q  +P+ +
Sbjct: 902  GVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAY 961

Query: 321  FSEKLTGASLRYPTYDKEFYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRQH 380
            FSEKL+G  L Y TYDKE YALVR L+TWQHYLWPKEF+IH+DHESLKH+  Q KLNR+H
Sbjct: 962  FSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIHSQGKLNRRH 1021

Query: 381  AKWLEFIETFQYVIKYKQDKENIVADALSRR---------EVVRLHGIPKSIVSDRDVKF 440
            AKW+EFIE+F YVIK+K+ KENI+ADALSRR         ++  L  I    V D D   
Sbjct: 1022 AKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYVHDADFND 1081

Query: 441  LSHFWRVLWGKLGTK----LVYSTTCHPQTDGQTEVVKRTMTAMLRAIIDKNHKTWEDCL 500
             +H    L G  G K    ++ S    PQ       ++R +    RA++ KN K WE+CL
Sbjct: 1082 EAH-GGGLMGHFGAKKTHDILASHFFWPQ-------MRRDVG---RAVLKKNIKMWEECL 1141

Query: 501  PFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPISSKEFVNFDANAKVEFVHKLHKQ 560
            P IEFAYNR +HSTTK  PF+IVYG  P  PIDL+P+ S E +NFDA  + E + KLH+ 
Sbjct: 1142 PHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHET 1201

Query: 561  VKKQIEKQNFKVATRIKKGRKIAIFKPGDWVWVHFRKERFPTRRKSKLLPRGDGPFQVLE 620
             K+ IE+ N K      KGR+   F+PGD VW+H RKERFP  RKSKL+PR DGPF+VL 
Sbjct: 1202 TKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLA 1261

Query: 621  HINDNAYKIDLPGKYGVSATFNVVDLS-HFDVGDGLDSRTNPSQEGEND----------M 645
             IN+NAYKIDLP  +GVS TFNV DL  +    D  +SRT   QEGE+D           
Sbjct: 1262 KINENAYKIDLPADFGVSLTFNVADLKPYLGEEDEFESRTTQMQEGEDDEDINTIDTSMS 1321

[Close]
BLAST of CmoCh06G009190 vs. TrEMBL
Match: Q01KW5_ORYSA (H0211A12.9 protein OS=Oryza sativa GN=H0211A12.9 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.2e-122
Identity = 246/501 (49.10%), Postives = 310/501 (61.88%), Query Frame = 1 

Query: 201  YLVSSNGVEVDEEKVKAIKDWPTLKNIN-------------------------------- 260
            Y+V+  G+EVD+ KV+AI+ WPT K ++                                
Sbjct: 842  YVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKK 901

Query: 261  -VSFIWGKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 320
             V F WG  QE AF+ LK+KL+ APLL LP+F  TFE+ECDASG+G+G VL+Q  +P+ +
Sbjct: 902  GVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAY 961

Query: 321  FSEKLTGASLRYPTYDKEFYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRQH 380
            FSEKL+G  L Y TYDKE YALVR L+TWQHYLWPKEF+IH+DHESLKH+  Q KLNR+H
Sbjct: 962  FSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIHSQGKLNRRH 1021

Query: 381  AKWLEFIETFQYVIKYKQDKENIVADALSRR---------EVVRLHGIPKSIVSDRDVKF 440
            AKW+EFIE+F YVIK+K+ KENI+ADALSRR         ++  L  I    V D D   
Sbjct: 1022 AKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYVHDADFND 1081

Query: 441  LSHFWRVLWGKLGTK----LVYSTTCHPQTDGQTEVVKRTMTAMLRAIIDKNHKTWEDCL 500
             +H    L G  G K    ++ S    PQ       ++R +    RA++ KN K WE+CL
Sbjct: 1082 EAH-GGGLMGHFGAKKTHDILASHFFWPQ-------MRRDVG---RAVLKKNIKMWEECL 1141

Query: 501  PFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPISSKEFVNFDANAKVEFVHKLHKQ 560
            P IEFAYNR +HSTTK  PF+IVYG  P  PIDL+P+ S E +NFDA  + E + KLH+ 
Sbjct: 1142 PHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHET 1201

Query: 561  VKKQIEKQNFKVATRIKKGRKIAIFKPGDWVWVHFRKERFPTRRKSKLLPRGDGPFQVLE 620
             K+ IE+ N K      KGR+   F+PGD VW+H RKERFP  RKSKL+PR DGPF+VL 
Sbjct: 1202 TKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLA 1261

Query: 621  HINDNAYKIDLPGKYGVSATFNVVDLS-HFDVGDGLDSRTNPSQEGEND----------M 645
             IN+NAYKIDLP  +GVS TFNV DL  +    D  +SRT   QEGE+D           
Sbjct: 1262 KINENAYKIDLPADFGVSLTFNVADLKPYLGEEDEFESRTTQMQEGEDDEDINTIDTSMS 1321

[Close]
BLAST of CmoCh06G009190 vs. NCBI nr
Match: gi|727486529|ref|XP_010419258.1| (PREDICTED: uncharacterized protein LOC104704959 [Camelina sativa])

HSP 1 Score: 707.6 bits (1825), Expect = 2.1e-200
Identity = 358/653 (54.82%), Postives = 448/653 (68.61%), Query Frame = 1 

Query: 15  SLPSDFFVLLQEFEDLFSKEMPSSLPPLRGIEHKIDFIPGEPIPNRPAYRTNPKEAEEIQ 74
           ++P+    LL+ ++D+F  E+P  LPPLRGIEH+ID +PG  +PNRPAYR NP+EA+E++
Sbjct: 334 AVPAMIRPLLRRYQDVFPDELPHGLPPLRGIEHQIDLVPGAQLPNRPAYRVNPEEAKELE 393

Query: 75  RQVSELLAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPRLDDML 134
           RQVSEL+ +GYVRESLS C+VPV+LVPKKDG+WRMC+DCRA+N ITIKYRHPIPRLDDML
Sbjct: 394 RQVSELMEQGYVRESLSPCAVPVLLVPKKDGTWRMCVDCRAVNNITIKYRHPIPRLDDML 453

Query: 135 DELHGCSLFTKIDLKSGYHQIHMHIGDEWKTAF----KTKYGLYEWLVMPFGLTNAPSTF 194
           DEL G ++F+KIDLKSGYHQ+ M  GDE    +    K  +G  E + + F ++      
Sbjct: 454 DELSGSTIFSKIDLKSGYHQVRMKEGDEENKLYANFKKCVFGANELVFLGFVVSAQGLKV 513

Query: 195 MRLMNHILREYLVSSNGVEVDEEKVKA------IKDWP--------TLKNINVSFIWGKD 254
                  + E+   +N  +V      A      ++D+         T+K  +V F WG  
Sbjct: 514 DNDKIKAIEEWPTPTNISQVRSFHGLASFYRRFVRDFSSVAAPLTATIKK-SVEFKWGPA 573

Query: 255 QELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGAS 314
           QE AF  LK +L+ APLLALP+F  TFE+ECDASGVGIGAVL Q  +P+ +FSEKL+G +
Sbjct: 574 QEAAFRELKHRLTHAPLLALPDFSKTFEVECDASGVGIGAVLTQGGKPIAYFSEKLSGPT 633

Query: 315 LRYPTYDKEFYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRQHAKWLEFIET 374
           L YPTYDKE YALVRA++TWQHYL  KE +IHTDHE+LKHLR Q  L R+HAKWLEFIET
Sbjct: 634 LNYPTYDKELYALVRAMETWQHYLLAKECVIHTDHETLKHLRGQTNLKRRHAKWLEFIET 693

Query: 375 FQYVIKYKQDKENIVADALSRREVV------RLHG---IPKSIVSDRD------------ 434
           F YVIKYK+ KEN+VADALSRR  +      R+ G   I  +   D D            
Sbjct: 694 FPYVIKYKKGKENVVADALSRRHTLITTMDARILGFEHIKDAYGLDPDFAECYQEHGKGS 753

Query: 435 -VKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVKRTMTAMLRAIIDKNHKTWEDCL 494
             KFL HFWR +W KLGT+L+YST CHPQTDGQTEVV RT+ A+LR  I  N KTW +CL
Sbjct: 754 YTKFLGHFWRTIWRKLGTRLLYSTACHPQTDGQTEVVNRTLGALLRTTIGSNRKTWVECL 813

Query: 495 PFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPISSKEFVNFDANAKVEFVHKLHKQ 554
           PF+EFAYN   HS T+ +PFEI YGF PLTP+D+LP+   E VN D  +K E + +LH +
Sbjct: 814 PFVEFAYNLATHSATQKSPFEIAYGFKPLTPMDVLPLPPGEVVNQDGASKAELIKQLHAE 873

Query: 555 VKKQIEKQNFKVATRIKKGRKIAIFKPGDWVWVHFRKERFPTRRKSKLLPRGDGPFQVLE 614
           VK  IE++    A    KGRK  +FK GDWVW+H R ERFP +RK KL PRGDGPF+V+E
Sbjct: 874 VKANIERRTEHYARTANKGRKTMVFKEGDWVWLHLRPERFPQKRKDKLSPRGDGPFRVVE 933

Query: 615 HINDNAYKIDLPGKYGVSATFNVVDLSHFDVGDGLD-SRTNPSQEGENDMNHD 627
            INDN+Y+++LPG+Y  S +FNV DL+ FDVG   D  R  P Q G ND   D
Sbjct: 934 RINDNSYRLELPGEYLTSTSFNVSDLAPFDVGTEEDVLRAKPFQGGGNDGTRD 985

[Close]
BLAST of CmoCh06G009190 vs. NCBI nr
Match: gi|147772264|emb|CAN71870.1| (hypothetical protein VITISV_044169 [Vitis vinifera])

HSP 1 Score: 703.7 bits (1815), Expect = 3.1e-199
Identity = 389/723 (53.80%), Postives = 462/723 (63.90%), Query Frame = 1 

Query: 21  FVLLQ--EFEDLFSKEMPSSLPPLRGIEHKIDFIPGEPIPNRPAYRTNPKEAEEIQRQVS 80
           FVLL   E+ED+F  ++PS LPP+RGIEH+IDF+ G  IPNRPAY++NP+E  E+QRQV 
Sbjct: 29  FVLLYKYEYEDVFPNDVPSELPPIRGIEHQIDFVLGATIPNRPAYKSNPEETTELQRQVE 88

Query: 81  ELLAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPRLDDMLDELH 140
           ELL KG+VRES+S C++PV+LVPKKDG+WRMC+D +AIN I +KYRHPI RLDDMLDELH
Sbjct: 89  ELLTKGHVRESMSPCAMPVLLVPKKDGTWRMCVDFKAINNIMVKYRHPILRLDDMLDELH 148

Query: 141 GCSLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHIL 200
           G  +FTKIDLKS YHQI M  GDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMN  L
Sbjct: 149 GSCVFTKIDLKSRYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNDAL 208

Query: 201 RE---------------------------------------------YLVSSNGVEVDEE 260
           R                                              Y+VS+ G+EVDEE
Sbjct: 209 RAFIGRFVVVYFDDILVYSKNLDEHINHLHCVLIKCSFCMDKVVFLGYVVSAKGIEVDEE 268

Query: 261 KVKAIKDWPTLKNIN--------VSFI--WGKD--------QELAFNTLKEKLSSAPLLA 320
           KVKAIK+WPT  +I          SF   + KD         E+    +  KL  APLLA
Sbjct: 269 KVKAIKEWPTPMSITEVRSFHGLASFYRQFVKDFSTLAALVTEIVKKFVGFKLCGAPLLA 328

Query: 321 LPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKEFYALVRALQT 380
           LP+F  TFEIECDAS           ++P+ +FSEKL GA+L YP YDKE YALVRAL+T
Sbjct: 329 LPDFSKTFEIECDAS----------EKQPIAYFSEKLNGAALNYPKYDKELYALVRALET 388

Query: 381 WQHYLWPKEFIIHTDHESLKHLRVQNKLNRQHAKWLEFIETFQYVIKYKQDKENIVADAL 440
           WQHYLWPKEF+IH DHESLKHL+ Q KLNR+HAKW+EFIETF YVIKYKQ KENIVADAL
Sbjct: 389 WQHYLWPKEFVIHADHESLKHLKGQGKLNRRHAKWVEFIETFPYVIKYKQGKENIVADAL 448

Query: 441 SRREVVRLHGIPKSIVSDRDVKFLS-HFWRVLWGK-------LGTKLVYSTTCHPQTDGQ 500
           SRR          ++VS  + K L   +   L+          G        CH      
Sbjct: 449 SRRY---------ALVSTLNAKLLGFEYVEELYANDDDFANVYGASHEGGLICHFGVRET 508

Query: 501 TEVVKRTM--TAMLRAI--IDKNHKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPL 560
            +V+        M R +    KN K WEDCL FIEFAYNR VHS T  +PFEIVYGFNPL
Sbjct: 509 LDVLHEHFFWPKMKRDVERACKNLKNWEDCLSFIEFAYNRSVHSITNSSPFEIVYGFNPL 568

Query: 561 TPIDLLPISSKEFVNFDANAKVEFVHKLHKQVKKQIEKQNFKVATRIKKGRKIAIFKPGD 620
           TP+DLLP+   E  + D   K + V KLH+ V+K +EK+N + AT+  KGR+  IF+PGD
Sbjct: 569 TPLDLLPLQVNEMTSLDGEKKAKMVKKLHESVRKHMEKKNEQYATKANKGRRQVIFEPGD 628

Query: 621 WVWVHFRKERFPTRRKSKLLPRGDGPFQVLEHINDNAYKIDLPGKYGVSATFNVVDLSHF 664
           WVWVH RKERFPT R SKL PRGDG FQ           +DLPG+Y +SATFNV DLS F
Sbjct: 629 WVWVHMRKERFPTCRWSKLHPRGDGLFQ-----------LDLPGEYNISATFNVSDLSPF 688

[Close]
BLAST of CmoCh06G009190 vs. NCBI nr
Match: gi|923806367|ref|XP_013689215.1| (PREDICTED: uncharacterized protein LOC106393006 [Brassica napus])

HSP 1 Score: 654.8 bits (1688), Expect = 1.6e-184
Identity = 333/631 (52.77%), Postives = 415/631 (65.77%), Query Frame = 1 

Query: 25   QEFEDLFSKEMPSSLPPLRGIEHKIDFIPGEPIPNRPAYRTNPKEAEEIQRQVSELLAKG 84
            +E+ D+F +E P+ LPP RGIEH+ID +PG  +PNRPAYRTN ++ +E+QRQV EL+ KG
Sbjct: 706  EEYGDVFPEESPAGLPPFRGIEHQIDLVPGASLPNRPAYRTNQEDTKELQRQVDELMEKG 765

Query: 85   YVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIKYRHPIPRLDDMLDELHGCSLFT 144
            ++RES+S C+VPV+LVPKKDGSWRMC+DC AIN IT+KYRHPIPRLDDML ELH   +  
Sbjct: 766  HIRESISPCAVPVLLVPKKDGSWRMCVDCMAINNITVKYRHPIPRLDDMLGELHAQGIKV 825

Query: 145  KIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHILREYLVS 204
              +                  +F    G Y      F    AP          L E +  
Sbjct: 826  DEEKIKAIRDWPSPKSVSEVRSFHGLVGFYRRFFKDFSTIAAP----------LTEVIKK 885

Query: 205  SNGVEVDEEKVKAIKDWPTLKNINVSFIWGKDQELAFNTLKEKLSSAPLLALPNFESTFE 264
            S G++                       W K QE  F  LK KL+ APLL+LP+F  TFE
Sbjct: 886  SMGLK-----------------------WEKAQEEVFQNLKGKLTEAPLLSLPDFSKTFE 945

Query: 265  IECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKEFYALVRALQTWQHYLWPKE 324
            IECDASGVGIGAVLMQ + P+ +FSEKL GA L YPTYDK  YAL++AL+TWQHYLWPKE
Sbjct: 946  IECDASGVGIGAVLMQEKIPIAYFSEKLGGAMLNYPTYDKALYALIKALETWQHYLWPKE 1005

Query: 325  FIIHTDHESLKHLRVQNKLNRQHA--------KWLE------------------------ 384
            F+IHTDHESLKHL+ Q+KLN++HA        +W++                        
Sbjct: 1006 FVIHTDHESLKHLKGQHKLNKRHAGTLLLAKHEWVDICMDFVLGLPRTKRRRDSIFVVVE 1065

Query: 385  -FIETFQYVIKYKQDKENIVADALSRREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLG 444
             F +   ++  +K D   ++A+ L  ++VVRLHG+P++IVSDRD KFLSHFW+ LW K G
Sbjct: 1066 RFSKMAHFIACHKTDNAPLIAE-LFFKDVVRLHGMPRTIVSDRDTKFLSHFWKTLWSKPG 1125

Query: 445  TKLVYSTTCHPQTDGQTEVVKRTMTAMLRAIIDKNHKTWEDCLPFIEFAYNRVVHSTTKC 504
            TKL++STTCHPQTDGQTEVV RT++ +LRA+I KN KTWEDCLP +EF+YN  VH  TK 
Sbjct: 1126 TKLMFSTTCHPQTDGQTEVVNRTLSTLLRAVIKKNIKTWEDCLPHVEFSYNHSVHRATKF 1185

Query: 505  TPFEIVYGFNPLTPIDLLPISSKEFVNFDANAKVEFVHKLHKQVKKQIEKQNFKVATRIK 564
            +PF IVYGFNPLTP+DLLP+   E +N D  AK EFV  LH+QVKK IE++  + A    
Sbjct: 1186 SPFTIVYGFNPLTPLDLLPLPFPEQINLDGKAKAEFVVSLHEQVKKNIEERTKEYAKHAN 1245

Query: 565  KGRKIAIFKPGDWVWVHFRKERFPTRRKSKLLPRGDGPFQVLEHINDNAYKIDLPGKYGV 623
            KGR+  I +PGD V +H RKERFP  RKSKLLPR DGPF+VLE IN+NAYKIDL  KY +
Sbjct: 1246 KGRRELILEPGDLVTIHIRKERFPEERKSKLLPRSDGPFKVLERINNNAYKIDLQCKYPI 1301

[Close]
BLAST of CmoCh06G009190 vs. NCBI nr
Match: gi|823145097|ref|XP_012472412.1| (PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii])

HSP 1 Score: 539.3 bits (1388), Expect = 1.0e-149
Identity = 257/400 (64.25%), Postives = 317/400 (79.25%), Query Frame = 1 

Query: 1    MCKGSCYFTNMLNPSLPSDFFVLLQEFEDLFSKEMPSSLPPLRGIEHKIDFIPGEPIPNR 60
            M K   + TN L  +LP+    LLQEF D+F +E+P+ LPP+RGIEH+IDF+PG  IPNR
Sbjct: 734  MYKECLFETNELENTLPTPIVSLLQEFGDIFPEEVPNGLPPIRGIEHQIDFVPGAAIPNR 793

Query: 61   PAYRTNPKEAEEIQRQVSELLAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKIT 120
            PAYR+NP+E +E+++QV+EL+ KGY+RESLS C+VPV+LVPKKDGSWRMC+D RAINKIT
Sbjct: 794  PAYRSNPEETKELEKQVAELMEKGYIRESLSPCAVPVLLVPKKDGSWRMCVDYRAINKIT 853

Query: 121  IKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMP 180
            IKYRHPIPRLD+MLDEL G  LF+KIDLKSGYHQI M  GDEWKTAFKTKYGLYEWLVMP
Sbjct: 854  IKYRHPIPRLDNMLDELSGAQLFSKIDLKSGYHQIRMREGDEWKTAFKTKYGLYEWLVMP 913

Query: 181  FGLTNAPSTFMRLMNHILREY------------LVSSNGVEVDEEKVKAIKD-------- 240
            FGLTNAPSTFMRLMN++LR +            LV S  +E   + ++A+ +        
Sbjct: 914  FGLTNAPSTFMRLMNYVLRSFIGRFCVVYFDDILVYSKSLEDHIQHLRAVLEVLRKEFCC 973

Query: 241  --WPTLKNINVSFIWGKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVL 300
                 +   N  F+W  +QE +FN LKE L++APLL+LP+F  TFEIECDASG+GIGA L
Sbjct: 974  CPLTGIIKKNSPFVWTDEQENSFNKLKECLTNAPLLSLPDFNKTFEIECDASGIGIGAAL 1033

Query: 301  MQNQRPLMFFSEKLTGASLRYPTYDKEFYALVRALQTWQHYLWPKEFIIHTDHESLKHLR 360
            MQ+ RP+ +FSEKL GA+L YPTYDKE YALVRAL+TWQHYLWPKEF+IH+DHE+LK+L+
Sbjct: 1034 MQDGRPIAYFSEKLNGATLNYPTYDKELYALVRALETWQHYLWPKEFVIHSDHEALKNLK 1093

Query: 361  VQNKLNRQHAKWLEFIETFQYVIKYKQDKENIVADALSRR 379
             Q KLN++HAKW+E++E+F YVIKYK+ KEN+VADALSRR
Sbjct: 1094 GQTKLNKRHAKWVEYLESFLYVIKYKKGKENVVADALSRR 1133

[Close]
BLAST of CmoCh06G009190 vs. NCBI nr
Match: gi|923748122|ref|XP_013673383.1| (PREDICTED: uncharacterized protein LOC106377669 [Brassica napus])

HSP 1 Score: 536.2 bits (1380), Expect = 8.5e-149
Identity = 259/415 (62.41%), Postives = 312/415 (75.18%), Query Frame = 1 

Query: 3   KGSCYFTNMLNPSLPSDFFVLLQEFEDLFSKEMPSSLPPLRGIEHKIDFIPGEPIPNRPA 62
           K  CY   +  P +P     L+  ++D+F  E+P+ LPP+RGIEH+ID +PG P+PNR A
Sbjct: 147 KEGCY-AGLEAPEVPDVVQDLMGRYKDVFPDEIPAGLPPVRGIEHQIDLVPGAPLPNRAA 206

Query: 63  YRTNPKEAEEIQRQVSELLAKGYVRESLSLCSVPVILVPKKDGSWRMCIDCRAINKITIK 122
           YR NP+EA+E++RQV +L+ KGY+RESLS C+VPV+LVPKKDG+WRMC+DCRAIN ITIK
Sbjct: 207 YRVNPEEAKELERQVQDLMDKGYIRESLSPCAVPVLLVPKKDGTWRMCVDCRAINNITIK 266

Query: 123 YRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIHMHIGDEWKTAFKTKYGLYEWLVMPFG 182
           YR+PIPRLDDMLDEL G  +F+KIDL+SGYHQ+ M  GDEWKTAFKTK GLYEWLVMPFG
Sbjct: 267 YRYPIPRLDDMLDELSGSVVFSKIDLRSGYHQVRMKEGDEWKTAFKTKQGLYEWLVMPFG 326

Query: 183 LTNAPSTFMRLMNHILREYL---VSSNGVEVDEEKVKAIKDWPTLKNI------------ 242
           LTNAPSTFMRLMN +LR Y+   VSS G++VDEEK+KAI+DWPT   I            
Sbjct: 327 LTNAPSTFMRLMNEVLRPYIGFVVSSQGLKVDEEKIKAIQDWPTPTTIGHTRSFHGLASF 386

Query: 243 ---------------------NVSFIWGKDQELAFNTLKEKLSSAPLLALPNFESTFEIE 302
                                NV+F WG  QE +FN LK  L+ AP+L LPNF+  FEIE
Sbjct: 387 YRRFVKDFSTIAAPMTSVIKKNVTFAWGPAQEESFNRLKYSLTHAPVLTLPNFDKPFEIE 446

Query: 303 CDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKEFYALVRALQTWQHYLWPKEFI 362
           CDASG GIGAVL Q  RP+ FFSEKL+GA+L YPTYDKE YALVR+L+TW+HYL  KEFI
Sbjct: 447 CDASGTGIGAVLTQGGRPVAFFSEKLSGAALNYPTYDKELYALVRSLETWRHYLLSKEFI 506

Query: 363 IHTDHESLKHLRVQNKLNRQHAKWLEFIETFQYVIKYKQDKENIVADALSRREVV 382
           IHTDHE+LKHLR Q  L ++HA+WLEF+ETF YVIKYK+ K+NIVADALSRR  +
Sbjct: 507 IHTDHETLKHLRGQTTLKKRHARWLEFVETFPYVIKYKKGKDNIVADALSRRHTL 560

The following BLAST results are available for this feature:
BLAST of CmoCh06G009190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YI31B_YEAST3.9e-3742.78Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YG31B_YEAST3.9e-3742.78Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
POL3_DROME3.6e-3035.09Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
TF212_SCHPO4.6e-3033.91Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
TF21_SCHPO4.6e-3033.91Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CmoCh06G009190 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B004_VITVI2.1e-19953.80Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044169 PE=4 SV=1[more]
Q5MG92_IPOBA2.2e-14051.84Putative retrotransposon polyprotein OS=Ipomoea batatas PE=4 SV=1[more]
Q7XWZ0_ORYSJ5.6e-12348.28OSJNBb0072N21.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0072N21.12 PE=... [more]
Q7XRN3_ORYSJ1.2e-12249.10OSJNBa0024J22.19 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0024J22.19 PE=... [more]
Q01KW5_ORYSA1.2e-12249.10H0211A12.9 protein OS=Oryza sativa GN=H0211A12.9 PE=4 SV=1[more]
BLAST of CmoCh06G009190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh06G009190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|727486529|ref|XP_010419258.1|2.1e-20054.82PREDICTED: uncharacterized protein LOC104704959 [Camelina sativa][more]
gi|147772264|emb|CAN71870.1|3.1e-19953.80hypothetical protein VITISV_044169 [Vitis vinifera][more]
gi|923806367|ref|XP_013689215.1|1.6e-18452.77PREDICTED: uncharacterized protein LOC106393006 [Brassica napus][more]
gi|823145097|ref|XP_012472412.1|1.0e-14964.25PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii][more]
gi|923748122|ref|XP_013673383.1|8.5e-14962.41PREDICTED: uncharacterized protein LOC106377669 [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G009190.1CmoCh06G009190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 100..203
score: 1.7
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 318..481
score: 12
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 359..482
score: 3.0
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 368..479
score: 2.47
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 49..194
score: 7.9
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 93..586
score: 4.1E
NoneNo IPR availablePANTHERPTHR24559:SF201SUBFAMILY NOT NAMEDcoord: 93..586
score: 4.1E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 23..364
score: 3.0E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G009190Wild cucumber (PI 183967)cmocpiB827
CmoCh06G009190Cucumber (Chinese Long) v2cmocuB819
CmoCh06G009190Melon (DHL92) v3.5.1cmomeB745
CmoCh06G009190Watermelon (Charleston Gray)cmowcgB726
CmoCh06G009190Watermelon (97103) v1cmowmB780
CmoCh06G009190Cucurbita pepo (Zucchini)cmocpeB789
CmoCh06G009190Bottle gourd (USVL1VR-Ls)cmolsiB745
CmoCh06G009190Cucumber (Gy14) v2cgybcmoB413
CmoCh06G009190Melon (DHL92) v3.6.1cmomedB847
CmoCh06G009190Silver-seed gourdcarcmoB0438
CmoCh06G009190Cucumber (Chinese Long) v3cmocucB0965
CmoCh06G009190Watermelon (97103) v2cmowmbB815
CmoCh06G009190Wax gourdcmowgoB0991
CmoCh06G009190Cucurbita moschata (Rifu)cmocmoB227
CmoCh06G009190Cucumber (Gy14) v1cgycmoB0944
CmoCh06G009190Cucurbita maxima (Rimu)cmacmoB274
CmoCh06G009190Cucurbita maxima (Rimu)cmacmoB829