CmoCh06G009150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
Location	Cmo_Chr06 : 6456329 .. 6461326 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACATGGAGAGTTCATTTGTGCAGCCTGCAATTTCGAAATTTGATGGGTACTATGATCATTGGACGATGCTCATGGAAAACTTTTTGCGTTCAAAGGAGTACTGGGATTTGGTGGAGAATGGGATTCCTACAGGAACAGAAGACATCGTTTTCACAGATACCCAGAAGAAGCACATTGAAGATCAGAAGTTGAAAGATTTGAAAGCAAAGAATGGCCTATTTCAAGCATTAGATCGTTCGATCTTGGAGACAATCCTCAACAAGGATACAACAAAGAACATATGGGATTCTATGAAGCAGAAATATCAAGGTTCGACATGGGTAAAGCATACACATTTGCAAGCTCTTTGGAAGGAGTTTGAAATGCTTCACATGAAGGTAGGAGAATTTGTGGATGAGTACTTTGCTCGGACCCTTAGCATAGCCAACAAAATGAAACTAAATGGTGAGAACCAAGGATTTGTTGAAGTAGTTGAAAAGGTTCTGAGATTATATTGTGTGTTCCATTGAGGAGTCCAAGGATACAACTGTCACGACCCGATTTTCGAGGCTTCGAAGAATCGAACTCGTGACTAAAAGGACGAAATCGAAAACAAGCAAAAAGAAAATAAAAGAAAGGAAAAGCAAAGTAAAAGGATAAAAATACCATTCAATTAAAACAAAAGAGAAAGAAGATTTGTTGCGAAAATATTACGAAGGAAATTGAAAATGTAAAAATGAAATACAAAATTAAAATCAAATATTTCAGATGGAAAATACAATTATGAAGAAAAATACAAAAGACTAAATATGGAAACGGACAAAGGACTCTAAAAGACCGACCATGGACTGACGCTCCGGAACGACACCCCTCTGTGACCGCACAGCTCTCGAACACCTTCCCGAATCGACTGGTACCTGAAAAAAAAAAGGGAGAAAGGGGTGAGTATAAAAATATACTCAGTAAGCGGCCTACTTGTAGGCTCTTTTCGCATCCTTATCTTGGTAGGTAACCACGGTCTTTCTCGGGTTTCTAAGGAGAGTGATCTAACCTGCAACTCTCTTTTCTGTATCATAAAAGGCTTGCCCATCTTATGCAGTGAAATGATCAGTGTTCTGAGGTGAGGCGCGACCTCATAAGCGAATCTGAGGGGATCGTATGGCTGGATCTGATTACGTGACTCTCTCTCTGAACATCATCCGTGGAGGTTAACTGACGACCCTCACACGGGACCATACATCCACAAAACGGGGTGCGACCCCCTATGTGCCGGTCAGCTACTGAGTCATCCTAAGTGGCTCCACGTCCCTCGCTTAGGGACGGGTTTCTACGGCCCAGGAGTCCTGTTCAGAAGACCCCTTAGCTATCACCACTAGGTCTGGGCACCTGTCACACTTCCCTATCCGGATCTGCAAAGCTCAACGATCACCGTACCGGAGCTCTGTCTCGACGGTATGGTATCGGAGGAGAGAGGGAAGTGGAGGTTCTGATGACACTATCTTCACTGCTCAACTCTAGCGGGCTACCTACAGTTACCGTGGTGACCTATTATTCTTTCCAGGGTGGAACTTGGTGCCTTAGACTTAGATTCGTGTTTCTCTAGGATTCTCGTGCCTGGTGTCACAAACCTATCGGGTTTGGAATTCTGGGTTCTGGTTCCGCCGGTAATCATTTCGCGGGTCTAATTGCACGGTATTCTAGAGGTCCCCCAATCTAGGGTCTCATCTAGCTTATTTAGCCATAAGCATCCTAAATCTAAGCTCATAATTTCTTCCTATTCATCCAGAAACATAATACAAGCAATCATCATACAAAAGAGTATACACGCAGCAGTTCATGCAAAATTTTCAAACATGCTCAACGGGAAGATAACATCCATCTTTACCCGGAGCGCAGATTTCACAGGTTTCCCAACCTCCTCATGCATACATACATTATCAGAGTCTCAACCAAAACAGATTTAATACACATTTTGTACCTAGCTTTCCATAATCATCTTATATTCGCAGTTTCTATAGTAACACGCTAAGTCGGGCTAGCTAATTTCGTAGGTGGTAGCATGCATGCTTGTTCCTACAAGTACTGTTCGTGGAAATCCAAATGGCTACTTACTTGGTCGACGCGTGCCTTCCCGAGTTCGAGTTTTCTTGACGGAATGGATTCCAACAATTCTGGAATTTTCTTCACAGGTCCTAATTCACATAATAATAGGATCAGAGTTGAAATCGGGGCGAAAAACAAGCAAACGGAGGTCGAACGGAGGGAAAAAGATCACCCACCCGCCTACACGCGCCTGCACGCGCTCTGGAGGGTGTTTTACGCGCAGCTTCCCGCGCAGTCGCTGGCGAGCAGCCGGTTCGGTTCGGTGTTCCCGGGTCGCGTGCGGAGCGCTGGATCGGACTCGGGTTGACCCGAATCTGCGCCCTGACGCGTGTCGACTAGCCAGTGGGGCACGCCTCCCCAACCCGCGGTCGCCACGTGTCACTCGTCGGTCCCGCCGCGCTCCTCCATACGCCGGCCGACGAGTGGCGGCAAGGCCTCCTCTCTCTCCTCCTGCGTTTTTCCAAATTTTCCAGAAACGTGAGTTTTTGGCGTTTTCGATCTATTTTATTCCGATTTTCTTATCTTTCAATCCGTAATCCATATCAACAAAGTTTCTACACGCAAATTGTAGATCTCATATTCTACTTCTATAATATATTTTTCCTTTATTTTTTTCTTGAACACAGGATGAGTTAAGGCCGTCCAAATATACAGAAAAACTCACATTTTCTATTTTCGATCGCTTTACCCGAAGTCAAGACTAAACTCTGATTTTCGTCCGATTCTCGTCCAAGAACTTCAAGAACCTGTGAGAATCTTAGTTTAGTCACATACCTCAAAAACTCCAGATCTAACGCTCATGAAACTCCTCACATCTAGATAAAATCGAAATAAGAAGTTCGGAACCTTACTTTGTCCGTTCTCGGATTTTCTTGCCGGAATGAGTGGATTCCACCACCCGAACTCCTTTTCCAGCACTGGGAGAAGTATTGCTTCGAAGTTTCTTGCCTTGGATTCAATCTCCAATAGCTATTTGTCATCTCTATTCTTCCTCTCTCCCAAACCTTAACTTCTTCTCCTTTCTCCGTTCTCTCACTCTTTTTCTTTTCTTTTCTCTCTCTTTCTTCTTGAAGCCCAAACAAGTAGACCCGTTGGATAAGAGTAGGGGCAAAATGACCATTTTGCCCCTATGTTGTTATTTTTATTTTATTTATTTATTCATCTAAAAATTCGGGTATTACAACAACCATCTTAACCATTGATGAGTTGCAAAGCAGCCTGCTTGTGCATGAACAATGCCTGAGTTCTCATGTTGAAGAAGAACACGCTTTGAAGATCACTCATGGTGAACAATCTGGAGGAAGGGGTCAAGGTCGTGGAAGTTTTAAAGGCAGAGGAAGGGGAAGAGACAAACAAACCTTCAACAGGGCCACAGTGGAGTTCTATAAGTGTCACAAGCTAGGACATTTTCAATGGGAATGTCAAAGCAAGGAGAAGGAGACAAACTATGTAGAGACTCAAGAAGGGATGTTGCTGATGGCTTACGTGAATATGAATAAGGCTAATAGAGAAGATATGTGGTTCCTTGACTCGGGATGTAGCAATCATATGTGTGGGAAGAAGGACTATTTTTTCAGATTTTGATGAAAGTTTCAGACATTCAGTGAAGCTGGGCAACAACTCAAGCATGGTTGTAACAGGAAAGGGTAATGTACGGTTGCAAGTGAATAGAATCATACAGATAATCACAGGAGTGTTCTATGTGCCAGAGCTGAAGAACAATGTGTTGAGTATTGGGAAATTGCAAGCAAAGGGGCTTATCATTTTGTTTCAAAATGGAACGTGCAAGGTGTTTCATCCTGAGAGAGGCTTAATCATGGAGACAAAGATGTCTTTGAATCGAATGTTCGTACTGCATGCTACATCTCAGCCTTTAGCATCCACTTATTTCAATACAATCATAGAAGATATTGAGCAACTTTGGCACTGTAGATATGGACGGATTAAAGACTCTTCAGCAAAAGAAGAGGTGGATGGTTTACCACAGCTCAAGTCTCCATTGAGACTGTGTAAAAATTGTCTAGTGGTAAGCAACAAAGGCACTCGTTTCCAAAAAGGAGCACATGGCGAGTTTCACAAATTCTCCAATTGGTGCATGCTGATATTTGTGGACCGATCAAACCCATCTCAAACAGTAAGAAAAGGTACTTGATTACTTTCACAGATGACTTCAACAGAACAACATGGGTTTATTTCTTAATGGAAAAATCAGAAGCCTTAGTTGTATTTAAAAACTTTAAGATTCATGTTCAGAAGGAAACAAACTCATTTATTAAAGTCTTGCAAACTGATCGAGGAGGAGAGTTTACTCACAAGAATTCACCAATTTTTGTGATGTAAATGGTATACAAAGACAACTGACAACTGCATACACGCCACAACAGAACGGAGTTGCGAAACGAAAAAATAAAACTATTATGAATATGGTTCGTAGTATGATTTCAGAAAAGAAAATTTCGAAAAGTTTCTGGCTTGAAGTAGTCAATTGGACAGTGTATGTACTGAATCGAAGTCCAACATTGGCTGTCAAAAATAAAACTCTAGAAGAAGCTTGGAGTGGAGTCAAACCTTCAGTTGAGCATTTTAGAGTTTTTGGATGCATCTCTCATGTTCATGTGCCTGACAGTATAAGAACTAAGCCGGATGATAAGAGTTTGAGTTGTGTTTTGCTAGGAGTTAGTGAAGAGTCAAAGACTTACCGACTCTATGATCCAACTTCACAAAGGATCATAGTAAGTAGGGATGTTGTATTCGAGGAAGATAAGAGTTGGGACTGGGATAAGATCTATGAAGAATCCATTATGTGCGATCTGGAATGGGGTGATCAAGAGGAGGCAACAGATGTGTTTTGGCTGAAGCAAGCTCTCCTAGCTCGAATAAGGGGAGGAATAGGAGACCACCAGTCTGGATGA

mRNA sequence

ATGTACATGGAGAGTTCATTTGTGCAGCCTGCAATTTCGAAATTTGATGGGTACTATGATCATTGGACGATGCTCATGGAAAACTTTTTGCGTTCAAAGGAGTACTGGGATTTGGTGGAGAATGGGATTCCTACAGGAACAGAAGACATCGTTTTCACAGATACCCAGAAGAAGCACATTGAAGATCAGAAGTTGAAAGATTTGAAAGCAAAGAATGGCCTATTTCAAGCATTAGATCGTTCGATCTTGGAGACAATCCTCAACAAGGATACAACAAAGAACATATGGGATTCTATGAAGCAGAAATATCAAGGTTCGACATGGGTAAAGCATACACATTTGCAAGCTCTTTGGAAGGAGTTTGAAATGCTTCACATGAAGGTAGGAGAATTTGTGGATGAGTACTTTGCTCGGACCCTTAGCATAGCCAACAAAATGAAACTAAATGGTGAGAACCAAGGATTTGTTGAAGTAGTTGAAAAGGTCTGGGCACCTGTCACACTTCCCTATCCGGATCTGCAAAGCTCAACGATCACCGTACCGGAGCTCTGTCTCGACGGTATGGTATCGGAGGAGAGAGGGAAGTGGAGGGTGGAACTTGGTGCCTTAGACTTAGATTCGTGTTTCTCTAGGATTCTCGTGCCTGGTGTCACAAACCTATCGGGTTTGGAATTCTGGGTTCTGGTTCCGCCGGTCCTAATTCACATAATAATAGGATCAGAGTTGAAATCGGGGCGAAAAACAAGCAAACGGAGGTCGAACGGAGGGAAAAAGATCACCCACCCGCCTACACGCGCCTGCACGCGCTCTGGAGGGTGTTTTACGCGCAGCTTCCCGCGCAGTCGCTGGCGAGCAGCCGGTTCGGTTCGGTGTTCCCGGGTCGCGTGCGGAGCGCTGGATCGGACTCGGGTTGACCCGAATCTGCGCCCTGACGCGTGTCGACTAGCCAGTGGGGCACGCCTCCCCAACCCGCGGTCGCCACGTGTCACTCGTCGGTCCCGCCGCGCTCCTCCATACGCCGGCCGACGAGTGGCGGCAAGGCCTCCTCTCTCTCCTCCTGCGTTTTTCCAAATTTTCCAGAAACGAGTTAGTGAAGAGTCAAAGACTTACCGACTCTATGATCCAACTTCACAAAGGATCATAGTAAGTAGGGATGTTGTATTCGAGGAAGATAAGAGTTGGGACTGGGATAAGATCTATGAAGAATCCATTATGTGCGATCTGGAATGGGGTGATCAAGAGGAGGCAACAGATGTGTTTTGGCTGAAGCAAGCTCTCCTAGCTCGAATAAGGGGAGGAATAGGAGACCACCAGTCTGGATGA

Coding sequence (CDS)

ATGTACATGGAGAGTTCATTTGTGCAGCCTGCAATTTCGAAATTTGATGGGTACTATGATCATTGGACGATGCTCATGGAAAACTTTTTGCGTTCAAAGGAGTACTGGGATTTGGTGGAGAATGGGATTCCTACAGGAACAGAAGACATCGTTTTCACAGATACCCAGAAGAAGCACATTGAAGATCAGAAGTTGAAAGATTTGAAAGCAAAGAATGGCCTATTTCAAGCATTAGATCGTTCGATCTTGGAGACAATCCTCAACAAGGATACAACAAAGAACATATGGGATTCTATGAAGCAGAAATATCAAGGTTCGACATGGGTAAAGCATACACATTTGCAAGCTCTTTGGAAGGAGTTTGAAATGCTTCACATGAAGGTAGGAGAATTTGTGGATGAGTACTTTGCTCGGACCCTTAGCATAGCCAACAAAATGAAACTAAATGGTGAGAACCAAGGATTTGTTGAAGTAGTTGAAAAGGTCTGGGCACCTGTCACACTTCCCTATCCGGATCTGCAAAGCTCAACGATCACCGTACCGGAGCTCTGTCTCGACGGTATGGTATCGGAGGAGAGAGGGAAGTGGAGGGTGGAACTTGGTGCCTTAGACTTAGATTCGTGTTTCTCTAGGATTCTCGTGCCTGGTGTCACAAACCTATCGGGTTTGGAATTCTGGGTTCTGGTTCCGCCGGTCCTAATTCACATAATAATAGGATCAGAGTTGAAATCGGGGCGAAAAACAAGCAAACGGAGGTCGAACGGAGGGAAAAAGATCACCCACCCGCCTACACGCGCCTGCACGCGCTCTGGAGGGTGTTTTACGCGCAGCTTCCCGCGCAGTCGCTGGCGAGCAGCCGGTTCGGTTCGGTGTTCCCGGGTCGCGTGCGGAGCGCTGGATCGGACTCGGGTTGACCCGAATCTGCGCCCTGACGCGTGTCGACTAGCCAGTGGGGCACGCCTCCCCAACCCGCGGTCGCCACGTGTCACTCGTCGGTCCCGCCGCGCTCCTCCATACGCCGGCCGACGAGTGGCGGCAAGGCCTCCTCTCTCTCCTCCTGCGTTTTTCCAAATTTTCCAGAAACGAGTTAGTGAAGAGTCAAAGACTTACCGACTCTATGATCCAACTTCACAAAGGATCATAGTAAGTAGGGATGTTGTATTCGAGGAAGATAAGAGTTGGGACTGGGATAAGATCTATGAAGAATCCATTATGTGCGATCTGGAATGGGGTGATCAAGAGGAGGCAACAGATGTGTTTTGGCTGAAGCAAGCTCTCCTAGCTCGAATAAGGGGAGGAATAGGAGACCACCAGTCTGGATGA

Homology

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BLAST of CmoCh06G009150 vs. TrEMBL
Match: A5B3I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004365 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 133/204 (65.20%), Postives = 157/204 (76.96%), Query Frame = 1


Query: 4   ESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHIEDQ 63
           E+SFVQP + KFDG+YDHW MLMENFLRSKEYW LVE+GIPT  E +V TD Q+K+I+DQ
Sbjct: 3   ENSFVQPTVPKFDGHYDHWAMLMENFLRSKEYWGLVESGIPTVAEGVVLTDAQRKNIDDQ 62

Query: 64  KLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKEFEM 123
           KLKDLKAKN LFQALDRS+LETILNKDT KNIWDS+KQKYQG+T VK  HLQAL KEFE+
Sbjct: 63  KLKDLKAKNYLFQALDRSVLETILNKDTAKNIWDSLKQKYQGTTRVKRAHLQALRKEFEL 122

Query: 124 LHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPY--------PDLQS 183
           LHMK GE V+EYFARTL+IANKMK NGEN+G V VVEK+   +T  +            +
Sbjct: 123 LHMKAGESVNEYFARTLTIANKMKANGENKGDVVVVEKILRSMTPKFDYVVCSIEESKDT 182

Query: 184 STITVPELCLDGMVSEERGKWRVE 200
           +T+T+ EL    +V E+R    VE
Sbjct: 183 NTLTIDELQSSLLVHEQRMSSHVE 206

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BLAST of CmoCh06G009150 vs. TrEMBL
Match: A0A0B2QZ81_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_042648 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 129/207 (62.32%), Postives = 153/207 (73.91%), Query Frame = 1


Query: 1   MYMESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHI 60
           M  ESSFVQPAI KFDG+YDHW +LM+NFLRSKEYW LVENGIP   E   FT+ ++KHI
Sbjct: 1   MASESSFVQPAIPKFDGHYDHWALLMDNFLRSKEYWGLVENGIPELVEGTPFTEVERKHI 60

Query: 61  EDQKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKE 120
           +DQKLKDLKAKN LFQALDRS+LETILNKDT+KNIWDS+KQKYQG++ VK   LQAL KE
Sbjct: 61  DDQKLKDLKAKNYLFQALDRSVLETILNKDTSKNIWDSLKQKYQGTSRVKRAQLQALRKE 120

Query: 121 FEMLHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPY--------PD 180
           FE+L MK GE V++YFA TL+IANKMK NGEN+G V VVEK+   +T  +          
Sbjct: 121 FEILRMKEGESVNDYFAWTLAIANKMKANGENKGDVAVVEKILRSMTPKFDYVVCSIEES 180

Query: 181 LQSSTITVPELCLDGMVSEERGKWRVE 200
             + T+T+ EL    +V E R    VE
Sbjct: 181 KDTDTLTIDELQSSLLVHELRMTSHVE 207

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BLAST of CmoCh06G009150 vs. TrEMBL
Match: A5C546_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033739 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.2e-59
Identity = 121/201 (60.20%), Postives = 147/201 (73.13%), Query Frame = 1


Query: 1   MYMESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHI 60
           M  E+SFVQPAI +FDG+YDHW+MLMENFLRSKEYW+LVE GI    E I  +D QKK +
Sbjct: 1   MAFENSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWNLVETGITAAAEGIDLSDAQKKAL 60

Query: 61  EDQKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKE 120
           EDQKLKDLKAKN LFQA+DRSILETIL KDT K+IWDS+KQKYQG+  VKH  LQAL KE
Sbjct: 61  EDQKLKDLKAKNYLFQAIDRSILETILKKDTAKDIWDSLKQKYQGTARVKHAQLQALRKE 120

Query: 121 FEMLHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPYPDLQSS---- 180
           FE+LHMK GE V++YF RTL IANKM+ +GE    V ++EK+   +T  Y  +  S    
Sbjct: 121 FEVLHMKTGESVNDYFGRTLIIANKMRTHGERMVDVVIIEKILRSMTSKYDYVVCSIEES 180

Query: 181 ----TITVPELCLDGMVSEER 194
               T+++ EL    +V E+R
Sbjct: 181 NDLDTLSIDELQSSLLVHEQR 201

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BLAST of CmoCh06G009150 vs. TrEMBL
Match: A5C9X9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027568 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.4e-58
Identity = 115/153 (75.16%), Postives = 129/153 (84.31%), Query Frame = 1


Query: 1   MYMESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHI 60
           M  ESSFVQP I KFDGYYDHW MLMENFLRSKEYW LV NG+P   ED+V  D Q+KHI
Sbjct: 1   MTTESSFVQPTIPKFDGYYDHWAMLMENFLRSKEYWGLVVNGVPAVAEDVVLXDAQRKHI 60

Query: 61  EDQKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKE 120
           EDQ+LKDLKAKN LFQALD SILETILNK TTK+IWDSMKQK+QG+T VK  +LQAL KE
Sbjct: 61  EDQQLKDLKAKNYLFQALDCSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKE 120

Query: 121 FEMLHMKVGEFVDEYFARTLSIANKMKLNGENQ 154
           FE+LHMK GE V+EYF+RTL+I+NKMK+N E Q
Sbjct: 121 FEILHMKSGETVNEYFSRTLAISNKMKVNEEEQ 153

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BLAST of CmoCh06G009150 vs. TrEMBL
Match: A0A151U9D3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_020116 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 114/201 (56.72%), Postives = 140/201 (69.65%), Query Frame = 1


Query: 1   MYMESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHI 60
           M  E +FVQPA+ +FDG+Y HW MLMENFLRSKEYW +VENG     E +   + QKK  
Sbjct: 1   MATEGTFVQPAVPRFDGHYSHWAMLMENFLRSKEYWVVVENGFSAAAEGVTLFEAQKKTY 60

Query: 61  EDQKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKE 120
           E+QKLKDLKAKN LFQALDRSILETI+NKDT+K IWDSMK+KY+G+T VK  HLQAL KE
Sbjct: 61  EEQKLKDLKAKNYLFQALDRSILETIINKDTSKIIWDSMKKKYEGTTRVKRAHLQALRKE 120

Query: 121 FEMLHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPY--------PD 180
           FE  HMK GE V+EY AR L I+NKMK NG++   V VVEK+   +T  +          
Sbjct: 121 FETAHMKEGESVNEYLARVLVISNKMKANGDDLKEVAVVEKILRSMTSEFNYVMCSIEES 180

Query: 181 LQSSTITVPELCLDGMVSEER 194
             +S +++ EL    +V E+R
Sbjct: 181 KDTSILSIDELQSSLLVHEQR 201

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BLAST of CmoCh06G009150 vs. TAIR10
Match: AT1G48720.1 (AT1G48720.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 9.3e-06
Identity = 24/88 (27.27%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 7  FVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHIEDQKLK 66
          F  P ++K +  YD+W++ M+  L + + W++VE G      +   + TQK  + D + +
Sbjct: 8  FQVPVLTKSN--YDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKR 67

Query: 67 DLKAKNGLFQALDRSILETILNKDTTKN 95
          D KA   ++Q LD    E ++   + K+
Sbjct: 68 DKKALCLIYQGLDEDTFEKVVEATSAKD 93

[Close]

BLAST of CmoCh06G009150 vs. NCBI nr
Match: gi|147820839|emb|CAN65188.1| (hypothetical protein VITISV_004365 [Vitis vinifera])

HSP 1 Score: 264.2 bits (674), Expect = 4.0e-67
Identity = 133/204 (65.20%), Postives = 157/204 (76.96%), Query Frame = 1


Query: 4   ESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHIEDQ 63
           E+SFVQP + KFDG+YDHW MLMENFLRSKEYW LVE+GIPT  E +V TD Q+K+I+DQ
Sbjct: 3   ENSFVQPTVPKFDGHYDHWAMLMENFLRSKEYWGLVESGIPTVAEGVVLTDAQRKNIDDQ 62

Query: 64  KLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKEFEM 123
           KLKDLKAKN LFQALDRS+LETILNKDT KNIWDS+KQKYQG+T VK  HLQAL KEFE+
Sbjct: 63  KLKDLKAKNYLFQALDRSVLETILNKDTAKNIWDSLKQKYQGTTRVKRAHLQALRKEFEL 122

Query: 124 LHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPY--------PDLQS 183
           LHMK GE V+EYFARTL+IANKMK NGEN+G V VVEK+   +T  +            +
Sbjct: 123 LHMKAGESVNEYFARTLTIANKMKANGENKGDVVVVEKILRSMTPKFDYVVCSIEESKDT 182

Query: 184 STITVPELCLDGMVSEERGKWRVE 200
           +T+T+ EL    +V E+R    VE
Sbjct: 183 NTLTIDELQSSLLVHEQRMSSHVE 206

[Close]

BLAST of CmoCh06G009150 vs. NCBI nr
Match: gi|297744326|emb|CBI37296.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 132/199 (66.33%), Postives = 155/199 (77.89%), Query Frame = 1


Query: 3   MESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHIED 62
           M SSFVQPAISKFDGYYDHW MLMENFLRSKEYW LV NG+P   ED V TD Q+KHIED
Sbjct: 27  MLSSFVQPAISKFDGYYDHWAMLMENFLRSKEYWGLVVNGVPAVAEDAVLTDAQRKHIED 86

Query: 63  QKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKEFE 122
           Q+LKDLKAKN LFQALDRSILETILNK TTK+IWDSMKQK+QG+T VK  +LQAL KEF+
Sbjct: 87  QQLKDLKAKNYLFQALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFK 146

Query: 123 MLHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPYPDLQSS------ 182
           +LHMK GE V+EYF+RTL+IANKMK+NGE++G   VVEK+   +T  +  +  S      
Sbjct: 147 ILHMKSGETVNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESKD 206

Query: 183 --TITVPELCLDGMVSEER 194
             T+T+ EL    +V E+R
Sbjct: 207 LDTLTIDELQSSLLVHEQR 225

[Close]

BLAST of CmoCh06G009150 vs. NCBI nr
Match: gi|731403213|ref|XP_010654967.1| (PREDICTED: uncharacterized protein LOC104880331 [Vitis vinifera])

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 132/201 (65.67%), Postives = 156/201 (77.61%), Query Frame = 1


Query: 1   MYMESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHI 60
           M +ESSFVQPAI KFDGYYDHW MLMENFLRSKEYW LVENG+P   ED+V T  Q+KHI
Sbjct: 1   MTIESSFVQPAILKFDGYYDHWAMLMENFLRSKEYWGLVENGVPVVAEDVVLTYAQRKHI 60

Query: 61  EDQKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKE 120
           EDQ+LKDLKAKN LF ALDRSILETILNK TTK+IWDSMKQK+QG+T VK  +LQAL KE
Sbjct: 61  EDQQLKDLKAKNYLFHALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKCGNLQALRKE 120

Query: 121 FEMLHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPYPDLQSS---- 180
           FE+LHMK GE V+EYF+RTL+IANKMK+NGE++G   VVEK+   +T  +  +  S    
Sbjct: 121 FEILHMKSGEIVNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEES 180

Query: 181 ----TITVPELCLDGMVSEER 194
               T+T+ EL    +V E+R
Sbjct: 181 KDLDTLTIDELQSSLLVHEQR 201

[Close]

BLAST of CmoCh06G009150 vs. NCBI nr
Match: gi|734386936|gb|KHN25123.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 248.1 bits (632), Expect = 2.9e-62
Identity = 129/207 (62.32%), Postives = 153/207 (73.91%), Query Frame = 1


Query: 1   MYMESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHI 60
           M  ESSFVQPAI KFDG+YDHW +LM+NFLRSKEYW LVENGIP   E   FT+ ++KHI
Sbjct: 1   MASESSFVQPAIPKFDGHYDHWALLMDNFLRSKEYWGLVENGIPELVEGTPFTEVERKHI 60

Query: 61  EDQKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKE 120
           +DQKLKDLKAKN LFQALDRS+LETILNKDT+KNIWDS+KQKYQG++ VK   LQAL KE
Sbjct: 61  DDQKLKDLKAKNYLFQALDRSVLETILNKDTSKNIWDSLKQKYQGTSRVKRAQLQALRKE 120

Query: 121 FEMLHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPY--------PD 180
           FE+L MK GE V++YFA TL+IANKMK NGEN+G V VVEK+   +T  +          
Sbjct: 121 FEILRMKEGESVNDYFAWTLAIANKMKANGENKGDVAVVEKILRSMTPKFDYVVCSIEES 180

Query: 181 LQSSTITVPELCLDGMVSEERGKWRVE 200
             + T+T+ EL    +V E R    VE
Sbjct: 181 KDTDTLTIDELQSSLLVHELRMTSHVE 207

[Close]

BLAST of CmoCh06G009150 vs. NCBI nr
Match: gi|147859212|emb|CAN81839.1| (hypothetical protein VITISV_033739 [Vitis vinifera])

HSP 1 Score: 236.5 bits (602), Expect = 8.9e-59
Identity = 121/201 (60.20%), Postives = 147/201 (73.13%), Query Frame = 1


Query: 1   MYMESSFVQPAISKFDGYYDHWTMLMENFLRSKEYWDLVENGIPTGTEDIVFTDTQKKHI 60
           M  E+SFVQPAI +FDG+YDHW+MLMENFLRSKEYW+LVE GI    E I  +D QKK +
Sbjct: 1   MAFENSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWNLVETGITAAAEGIDLSDAQKKAL 60

Query: 61  EDQKLKDLKAKNGLFQALDRSILETILNKDTTKNIWDSMKQKYQGSTWVKHTHLQALWKE 120
           EDQKLKDLKAKN LFQA+DRSILETIL KDT K+IWDS+KQKYQG+  VKH  LQAL KE
Sbjct: 61  EDQKLKDLKAKNYLFQAIDRSILETILKKDTAKDIWDSLKQKYQGTARVKHAQLQALRKE 120

Query: 121 FEMLHMKVGEFVDEYFARTLSIANKMKLNGENQGFVEVVEKVWAPVTLPYPDLQSS---- 180
           FE+LHMK GE V++YF RTL IANKM+ +GE    V ++EK+   +T  Y  +  S    
Sbjct: 121 FEVLHMKTGESVNDYFGRTLIIANKMRTHGERMVDVVIIEKILRSMTSKYDYVVCSIEES 180

Query: 181 ----TITVPELCLDGMVSEER 194
               T+++ EL    +V E+R
Sbjct: 181 NDLDTLSIDELQSSLLVHEQR 201

The following BLAST results are available for this feature:

BLAST of CmoCh06G009150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G009150 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B3I2_VITVI	2.8e-67	65.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004365 PE=4 SV=1	[more]
A0A0B2QZ81_GLYSO	2.1e-62	62.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin...	[more]
A5C546_VITVI	6.2e-59	60.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033739 PE=4 SV=1	[more]
A5C9X9_VITVI	2.4e-58	75.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027568 PE=4 SV=1	[more]
A0A151U9D3_CAJCA	2.7e-54	56.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmoCh06G009150 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48720.1	9.3e-06	27.27	unknown protein	[more]

BLAST of CmoCh06G009150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147820839\|emb\|CAN65188.1\|	4.0e-67	65.20	hypothetical protein VITISV_004365 [Vitis vinifera]	[more]
gi\|297744326\|emb\|CBI37296.3\|	1.1e-64	66.33	unnamed protein product [Vitis vinifera]	[more]
gi\|731403213\|ref\|XP_010654967.1\|	1.1e-64	65.67	PREDICTED: uncharacterized protein LOC104880331 [Vitis vinifera]	[more]
gi\|734386936\|gb\|KHN25123.1\|	2.9e-62	62.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so...	[more]
gi\|147859212\|emb\|CAN81839.1\|	8.9e-59	60.20	hypothetical protein VITISV_033739 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009150.1	CmoCh06G009150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 19..152 score: 2.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 65..152 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009150	Wax gourd	cmowgoB0991
CmoCh06G009150	Cucurbita moschata (Rifu)	cmocmoB227
CmoCh06G009150	Cucurbita pepo (Zucchini)	cmocpeB758
CmoCh06G009150	Cucumber (Gy14) v1	cgycmoB0944
CmoCh06G009150	Cucurbita maxima (Rimu)	cmacmoB274
CmoCh06G009150	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009150	Wild cucumber (PI 183967)	cmocpiB827
CmoCh06G009150	Cucumber (Chinese Long) v2	cmocuB819
CmoCh06G009150	Melon (DHL92) v3.5.1	cmomeB745
CmoCh06G009150	Watermelon (Charleston Gray)	cmowcgB726
CmoCh06G009150	Watermelon (97103) v1	cmowmB780
CmoCh06G009150	Cucurbita pepo (Zucchini)	cmocpeB789
CmoCh06G009150	Bottle gourd (USVL1VR-Ls)	cmolsiB745
CmoCh06G009150	Cucumber (Gy14) v2	cgybcmoB413
CmoCh06G009150	Melon (DHL92) v3.6.1	cmomedB847
CmoCh06G009150	Silver-seed gourd	carcmoB0438
CmoCh06G009150	Cucumber (Chinese Long) v3	cmocucB0965
CmoCh06G009150	Watermelon (97103) v2	cmowmbB815