CmoCh06G009000 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G009000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPescadillo homolog
LocationCmo_Chr06 : 5405364 .. 5406549 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTCCCTTTTTTTCCCTTTTTTTTTTCCCTTCTTTTTCCTTCCCTTTTTTCTTTCTGCTGCAATGGCGAACAAAGTTACGAGGAAGAAGCATTACAGACCTCCGGTAAGTCCGAATTTGTTCCCTCATTTATCAGATGCCTGTTATTATGGATTGTTTAGCATTTCGATGCAGATAGCTTGCTTCATTTTTTTTTTTTTTTGCCCATAAGGGTGGTCTTACATAGTGTTAATTCTTCCTGGTATGACTTACTTACTGACCTGACATTGATTAGACTTCCTCACTCCTTAAAATCCCTGTAAGCATCTAAAAAGAGAAGCAAGGAAATTGAGAGAATGAAATAAAGACTTGCAAATATCGGACATCGATCTCACTAATATCAAACTCATTTTTTTCGGTCGCTTAACAGGGGAAGAAGAAGGAGGGTAACGCATCGAGGTACGTGACCAGGACCCAGGCTGTGAAGCAGCTGCAAGTTAGTTTGCCACCTTTCAGGTATTTTTATCTTACCTCTCCTGATTTTATTTATTTATTATTATTATTTTTTTTTTATGGCTATTGGCATCGAGAATGGAGTGTGCTTTTAAAACGCATGATTAGTATTGGTTTTGGTTTCTTAGTGCTGTATCATTTGTATAGCTTAAGTTGGAGTTTCAGCTAAAATCGTATTAATACTGATTAAAGTGGGTGGTTCTGTTTGCTCGTCTAAAAATATTCTGGTGGAGCTTAGGTTGTATGCTATGAGTACACGACACAACTGGGTTAGAAATTTATTCGTATTCATAGATGCTTTGAAGCAAATGCCTTTTGCTTTTCTTGTTCGAACATGCTTTTCTTTGATTTTAAGTACTTGATATAAACAAATGTTTGAAGATTTTTGAAATATTTATTGAAACTGGTTGGACTAGGATGACACCGTTTTACCTTGATTGATAATGAACATTATTGAGACAATGGTTTCGGTTTTTATTATTCTGACAGGAAGCTATGCATTTTCAAGGGAATATTTCCTCGAGAGCCAAAGAAGAAGGTTAAAGGAAATCACCACACTTACTACCATTTGAAAGATGTTGCTTTTCTTCGTCATGAACCACTCTTGGAGAAGTTTAGAGAGATTAGGGCATATGAAAGAAGATCAACAAAGCTGATGCAAAAAAGAATAAGGAGCGTGCAAACTTTCTAA

mRNA sequence

TTTTTTTCCCTTTTTTTCCCTTTTTTTTTTCCCTTCTTTTTCCTTCCCTTTTTTCTTTCTGCTGCAATGGCGAACAAAGTTACGAGGAAGAAGCATTACAGACCTCCGGGGAAGAAGAAGGAGGGTAACGCATCGAGGTACGTGACCAGGACCCAGGCTGTGAAGCAGCTGCAAGTTAGTTTGCCACCTTTCAGGAAGCTATGCATTTTCAAGGGAATATTTCCTCGAGAGCCAAAGAAGAAGGTTAAAGGAAATCACCACACTTACTACCATTTGAAAGATGTTGCTTTTCTTCGTCATGAACCACTCTTGGAGAAGTTTAGAGAGATTAGGGCATATGAAAGAAGATCAACAAAGCTGATGCAAAAAAGAATAAGGAGCGTGCAAACTTTCTAA

Coding sequence (CDS)

ATGGCGAACAAAGTTACGAGGAAGAAGCATTACAGACCTCCGGGGAAGAAGAAGGAGGGTAACGCATCGAGGTACGTGACCAGGACCCAGGCTGTGAAGCAGCTGCAAGTTAGTTTGCCACCTTTCAGGAAGCTATGCATTTTCAAGGGAATATTTCCTCGAGAGCCAAAGAAGAAGGTTAAAGGAAATCACCACACTTACTACCATTTGAAAGATGTTGCTTTTCTTCGTCATGAACCACTCTTGGAGAAGTTTAGAGAGATTAGGGCATATGAAAGAAGATCAACAAAGCTGATGCAAAAAAGAATAAGGAGCGTGCAAACTTTCTAA
Homology
[Close]
BLAST of CmoCh06G009000 vs. Swiss-Prot
Match: PESC_CHLRE (Pescadillo homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_206018 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1 

Query: 16  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAF 75
           K K GNA++Y+TRTQAV++LQ+ L  FR+LCI KG+ PREPKKK KG + TYYHLKD+ +
Sbjct: 8   KGKSGNAAQYITRTQAVRKLQLRLSEFRRLCILKGVHPREPKKKPKGANKTYYHLKDINW 67

Query: 76  LRHEPLLEKFREIRAYERRSTKLMQKR 103
           L HEPLL  FR I+A++++  K   K+
Sbjct: 68  LAHEPLLNTFRSIKAHDKKVRKARAKQ 94

[Close]
BLAST of CmoCh06G009000 vs. Swiss-Prot
Match: PESC_CANGA (Pescadillo homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP7 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-19
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 20  GNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHLKDVA 79
           GNA  ++TR+QAV++LQ+SL  FR+LCIFKGI+PREPK K K N       T+Y+ KD+ 
Sbjct: 10  GNAKNFITRSQAVRKLQISLADFRRLCIFKGIYPREPKNKKKANKGSTAPTTFYYAKDIQ 69

Query: 80  FLRHEPLLEKFREIRAYERRSTKLM 100
           +L HEP+L KFRE + + R+ T+ +
Sbjct: 70  YLMHEPVLAKFREHKTFARKLTRAL 94

[Close]
BLAST of CmoCh06G009000 vs. Swiss-Prot
Match: PESC_VANPO (Pescadillo homolog OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NOP7 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.5e-19
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 16  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHL 75
           K   GNA  +VTR+QAV++LQVSL  FR+LCIFKGI+PREP+ K K N       T+Y+ 
Sbjct: 6   KNTSGNAKNFVTRSQAVRKLQVSLADFRRLCIFKGIYPREPRNKKKANKGSTAPTTFYYA 65

Query: 76  KDVAFLRHEPLLEKFREIRAYERRSTKLM 100
           KD+ +L HEP+L KFRE + + ++ T+ +
Sbjct: 66  KDIQYLMHEPVLNKFREHKTFAKKLTRAL 94

[Close]
BLAST of CmoCh06G009000 vs. Swiss-Prot
Match: PESC_YEAST (Pescadillo homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP7 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.5e-19
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 16  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHL 75
           K   GNA  ++TR+QAV++LQVSL  FR+LCIFKGI+PREP+ K K N       T+Y+ 
Sbjct: 6   KNTRGNARNFITRSQAVRKLQVSLADFRRLCIFKGIYPREPRNKKKANKGSTAPTTFYYA 65

Query: 76  KDVAFLRHEPLLEKFREIRAYERRSTKLM 100
           KD+ +L HEP+L KFRE + + R+ T+ +
Sbjct: 66  KDIQYLMHEPVLAKFREHKTFARKLTRAL 94

[Close]
BLAST of CmoCh06G009000 vs. Swiss-Prot
Match: PESC_YEAS7 (Pescadillo homolog OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP7 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.5e-19
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 16  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHL 75
           K   GNA  ++TR+QAV++LQVSL  FR+LCIFKGI+PREP+ K K N       T+Y+ 
Sbjct: 6   KNTRGNARNFITRSQAVRKLQVSLADFRRLCIFKGIYPREPRNKKKANKGSTAPTTFYYA 65

Query: 76  KDVAFLRHEPLLEKFREIRAYERRSTKLM 100
           KD+ +L HEP+L KFRE + + R+ T+ +
Sbjct: 66  KDIQYLMHEPVLAKFREHKTFARKLTRAL 94

[Close]
BLAST of CmoCh06G009000 vs. TrEMBL
Match: A0A0A0LV49_CUCSA (Pescadillo homolog OS=Cucumis sativus GN=Csa_1G132100 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-40
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 1 

Query: 1   MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKV 60
           M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQ+ LP FRKLCI+KG+FPREPKKKV
Sbjct: 1   MVNKVTRKKHYRPPGQKKEGNAARYVTRSQAVKQLQIGLPLFRKLCIYKGVFPREPKKKV 60

Query: 61  KGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIRSVQTF 110
           KGNHHTYYHLKD++FL HEPLLEK REIRAYE++  K   K+ +    F
Sbjct: 61  KGNHHTYYHLKDISFLHHEPLLEKCREIRAYEKKIKKADAKKNKERANF 109

[Close]
BLAST of CmoCh06G009000 vs. TrEMBL
Match: M5XAS1_PRUPE (Pescadillo homolog OS=Prunus persica GN=PRUPE_ppa003129mg PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 77/100 (77.00%), Postives = 89/100 (89.00%), Query Frame = 1 

Query: 5   VTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH 64
           + + KHYRPPGKKKEGNA+RY+TR+QAVKQLQVSLP FRKLCI KG+FPREPKKKVKGNH
Sbjct: 1   MVKHKHYRPPGKKKEGNAARYITRSQAVKQLQVSLPLFRKLCILKGVFPREPKKKVKGNH 60

Query: 65  HTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIR 105
           HTYYHLKDV+F++HEPLLE+ REIRAYER+  K   K+ R
Sbjct: 61  HTYYHLKDVSFIQHEPLLERLREIRAYERKVKKADAKKNR 100

[Close]
BLAST of CmoCh06G009000 vs. TrEMBL
Match: W9SBC6_9ROSA (Pescadillo homolog OS=Morus notabilis GN=L484_020558 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.2e-37
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = 1 

Query: 7   RKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHT 66
           + KHYRPPGKKKEGNA+RYVTR+QAVK LQVSLP FRKLCI KGIFPREPKKKVKGNHHT
Sbjct: 3   KPKHYRPPGKKKEGNAARYVTRSQAVKLLQVSLPVFRKLCILKGIFPREPKKKVKGNHHT 62

Query: 67  YYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR 103
           YYHLKD+AFL+HEPLLE FR++RAYE++  K   K+
Sbjct: 63  YYHLKDIAFLQHEPLLETFRDLRAYEKKIKKAKAKK 98

[Close]
BLAST of CmoCh06G009000 vs. TrEMBL
Match: A0A067LGE4_JATCU (Pescadillo homolog OS=Jatropha curcas GN=JCGZ_10263 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 77/99 (77.78%), Postives = 90/99 (90.91%), Query Frame = 1 

Query: 5   VTRK-KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGN 64
           +TRK KHYRPPGKKKEGNA+R+VTR+QAVKQLQ +L  FRKLCI KGIFPREPKKKVKGN
Sbjct: 1   MTRKIKHYRPPGKKKEGNAARFVTRSQAVKQLQCNLTLFRKLCILKGIFPREPKKKVKGN 60

Query: 65  HHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR 103
           HHTYYHLKD+A+L+HEPLLEKFREIRAY+++  K + K+
Sbjct: 61  HHTYYHLKDIAYLQHEPLLEKFREIRAYQKKIKKALAKK 99

[Close]
BLAST of CmoCh06G009000 vs. TrEMBL
Match: A5AJM2_VITVI (Pescadillo homolog OS=Vitis vinifera GN=VITISV_035385 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-36
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 1 

Query: 9   KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYY 68
           KHYRPPGKKKEGNA++Y+TR+QAVK LQVSLP FR+LCI KG+FPREPKKKVKGNHHTYY
Sbjct: 3   KHYRPPGKKKEGNAAKYITRSQAVKHLQVSLPLFRRLCILKGVFPREPKKKVKGNHHTYY 62

Query: 69  HLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIRSV 107
           H KD+AFL+HEPLLEKFR IRAY+++  K   K+ R +
Sbjct: 63  HTKDIAFLQHEPLLEKFRNIRAYDKKVNKAKAKKNRDL 100

[Close]
BLAST of CmoCh06G009000 vs. TAIR10
Match: AT5G14520.1 (AT5G14520.1 pescadillo-related)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-36
Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = 1 

Query: 9   KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYY 68
           KHYRP GKKKEGNA+RY+TR+QA+K LQV+L  FR+LCI KGIFPREPKKK+KGNHHTYY
Sbjct: 3   KHYRPTGKKKEGNAARYMTRSQALKHLQVNLNLFRRLCIVKGIFPREPKKKIKGNHHTYY 62

Query: 69  HLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR 103
           H+KD+AFL HEPLLEKFREI+ Y+++  K   K+
Sbjct: 63  HVKDIAFLMHEPLLEKFREIKTYQKKVKKAKAKK 96

[Close]
BLAST of CmoCh06G009000 vs. NCBI nr
Match: gi|659071907|ref|XP_008462522.1| (PREDICTED: pescadillo homolog [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 1 

Query: 1   MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKV 60
           M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQ+ LP FRKLCI+KGIFPREPKKKV
Sbjct: 1   MVNKVTRKKHYRPPGQKKEGNAARYVTRSQAVKQLQIGLPLFRKLCIYKGIFPREPKKKV 60

Query: 61  KGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIRSVQTF 110
           KGNHHTYYHLKD+AFL HEPLLEK REIRAYE++  K   K+ +    F
Sbjct: 61  KGNHHTYYHLKDIAFLHHEPLLEKCREIRAYEKKIKKADAKKNKERANF 109

[Close]
BLAST of CmoCh06G009000 vs. NCBI nr
Match: gi|449443367|ref|XP_004139449.1| (PREDICTED: pescadillo homolog [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 3.0e-40
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 1 

Query: 1   MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKV 60
           M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQ+ LP FRKLCI+KG+FPREPKKKV
Sbjct: 1   MVNKVTRKKHYRPPGQKKEGNAARYVTRSQAVKQLQIGLPLFRKLCIYKGVFPREPKKKV 60

Query: 61  KGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIRSVQTF 110
           KGNHHTYYHLKD++FL HEPLLEK REIRAYE++  K   K+ +    F
Sbjct: 61  KGNHHTYYHLKDISFLHHEPLLEKCREIRAYEKKIKKADAKKNKERANF 109

[Close]
BLAST of CmoCh06G009000 vs. NCBI nr
Match: gi|645248997|ref|XP_008230547.1| (PREDICTED: pescadillo homolog [Prunus mume])

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 77/100 (77.00%), Postives = 89/100 (89.00%), Query Frame = 1 

Query: 5   VTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH 64
           + + KHYRPPGKKKEGNA+RY+TR+QAVKQLQVSLP FRKLCI KG+FPREPKKKVKGNH
Sbjct: 1   MVKHKHYRPPGKKKEGNAARYITRSQAVKQLQVSLPLFRKLCILKGVFPREPKKKVKGNH 60

Query: 65  HTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIR 105
           HTYYHLKDV+F++HEPLLE+ REIRAYER+  K   K+ R
Sbjct: 61  HTYYHLKDVSFIQHEPLLERLREIRAYERKVKKADAKKNR 100

[Close]
BLAST of CmoCh06G009000 vs. NCBI nr
Match: gi|595924592|ref|XP_007214951.1| (hypothetical protein PRUPE_ppa003129mg [Prunus persica])

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 77/100 (77.00%), Postives = 89/100 (89.00%), Query Frame = 1 

Query: 5   VTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH 64
           + + KHYRPPGKKKEGNA+RY+TR+QAVKQLQVSLP FRKLCI KG+FPREPKKKVKGNH
Sbjct: 1   MVKHKHYRPPGKKKEGNAARYITRSQAVKQLQVSLPLFRKLCILKGVFPREPKKKVKGNH 60

Query: 65  HTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIR 105
           HTYYHLKDV+F++HEPLLE+ REIRAYER+  K   K+ R
Sbjct: 61  HTYYHLKDVSFIQHEPLLERLREIRAYERKVKKADAKKNR 100

[Close]
BLAST of CmoCh06G009000 vs. NCBI nr
Match: gi|747082407|ref|XP_011088522.1| (PREDICTED: pescadillo homolog [Sesamum indicum])

HSP 1 Score: 161.4 bits (407), Expect = 9.0e-37
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1 

Query: 9   KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYY 68
           KHYRPPGKKKEGNA++YVTR+QAVK LQVSLP FRKLCI KG+FPREPKKKVKGNHH+YY
Sbjct: 3   KHYRPPGKKKEGNAAKYVTRSQAVKNLQVSLPVFRKLCILKGVFPREPKKKVKGNHHSYY 62

Query: 69  HLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIRSV 107
           H+KD+ FLRH+PLLEK R+IRAYE++  K M K+ R +
Sbjct: 63  HMKDIMFLRHDPLLEKLRDIRAYEKKVKKAMSKKNRDL 100

The following BLAST results are available for this feature:
BLAST of CmoCh06G009000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PESC_CHLRE1.3e-2257.47Pescadillo homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_206018 PE=3 SV=1[more]
PESC_CANGA5.0e-1951.76Pescadillo homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / ... [more]
PESC_VANPO8.5e-1950.56Pescadillo homolog OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) ... [more]
PESC_YEAST8.5e-1950.56Pescadillo homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=N... [more]
PESC_YEAS78.5e-1950.56Pescadillo homolog OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP7 PE=3 SV=1[more]
BLAST of CmoCh06G009000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV49_CUCSA2.1e-4075.23Pescadillo homolog OS=Cucumis sativus GN=Csa_1G132100 PE=3 SV=1[more]
M5XAS1_PRUPE1.3e-3777.00Pescadillo homolog OS=Prunus persica GN=PRUPE_ppa003129mg PE=3 SV=1[more]
W9SBC6_9ROSA8.2e-3779.17Pescadillo homolog OS=Morus notabilis GN=L484_020558 PE=3 SV=1[more]
A0A067LGE4_JATCU1.1e-3677.78Pescadillo homolog OS=Jatropha curcas GN=JCGZ_10263 PE=3 SV=1[more]
A5AJM2_VITVI2.4e-3674.49Pescadillo homolog OS=Vitis vinifera GN=VITISV_035385 PE=3 SV=1[more]
BLAST of CmoCh06G009000 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14520.12.8e-3672.34 pescadillo-related[more]
BLAST of CmoCh06G009000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071907|ref|XP_008462522.1|1.0e-4077.06PREDICTED: pescadillo homolog [Cucumis melo][more]
gi|449443367|ref|XP_004139449.1|3.0e-4075.23PREDICTED: pescadillo homolog [Cucumis sativus][more]
gi|645248997|ref|XP_008230547.1|1.8e-3777.00PREDICTED: pescadillo homolog [Prunus mume][more]
gi|595924592|ref|XP_007214951.1|1.8e-3777.00hypothetical protein PRUPE_ppa003129mg [Prunus persica][more]
gi|747082407|ref|XP_011088522.1|9.0e-3775.51PREDICTED: pescadillo homolog [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010613PES
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006606 protein import into nucleus
biological_process GO:0051604 protein maturation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005730 nucleolus
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0030687 preribosome, large subunit precursor
molecular_function GO:0043021 ribonucleoprotein complex binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G009000.1CmoCh06G009000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010613PescadilloPFAMPF06732Pescadillo_Ncoord: 16..102
score: 1.0
NoneNo IPR availablePANTHERPTHR12221PESCADILLO - RELATEDcoord: 10..102
score: 2.9
NoneNo IPR availablePANTHERPTHR12221:SF6PESCADILLO HOMOLOGcoord: 10..102
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G009000Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G009000Cucurbita pepo (Zucchini)cmocpeB757