CmoCh06G008420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G008420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytochrome c biogenesis ATP-binding export protein ccmA
Location	Cmo_Chr06 : 4688373 .. 4689062 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCAGGAAGCCACCACTTCCTCGCCTTCTACTCAACCAGGTCTCTTGCATGCGGAATGCCCAACAAATCCTTAGAAATGTTAACGTCTCGATCCATGATGGCAGTGCGCTCGTGTTAACCGGGACCAATGGTTCAGGTAAAACGACATTCCTACGAATGTTAGCTGGATTCTCTCGGCCTTCTACAGGTGAGATCCTATGGAATGGCCATGACATTACAGAATCAGGAGTGTTCCATCAATACAAGCTTCAGCTGAACTGGCTTTCACTAAAAGATGCCATTAAAGAGAACTTCACCGTCATCGACAACGTTCAATGGTTCGAGGTGCTCGAGGGGAAGCAAGGCAAGTCATTGCCTTCCCTCCAATTGATGGGGCTTGGAAAATTGGCAAAAGAGAAGGCGAGAATGTTGTCGATGGGGCAACGGAAACGACTTCAGCTAGCAAGATTGTTGGCCCTTGACAGACCAATTTGGCTGCTTGATGAGCCTTCAGTTGCATTAGATGATGATGGGGTGAAGCTGCTGGAATACATCATTGCAGAGCATAGAAAGAAAGGTGGAATTGTTATTGTAGCAACACATATTCCAATAAAGATTGAAGATGCCATGATCTTGAGGCTTCCACCGCGGTTCCCACGGAGAATGACATTGGTTGATATGCTTGATCGGGCTGACATATCATAG

mRNA sequence

ATGTCTCTCAGGAAGCCACCACTTCCTCGCCTTCTACTCAACCAGGTCTCTTGCATGCGGAATGCCCAACAAATCCTTAGAAATGTTAACGTCTCGATCCATGATGGCAGTGCGCTCGTGTTAACCGGGACCAATGGTTCAGGTAAAACGACATTCCTACGAATGTTAGCTGGATTCTCTCGGCCTTCTACAGGTGAGATCCTATGGAATGGCCATGACATTACAGAATCAGGAGTGTTCCATCAATACAAGCTTCAGCTGAACTGGCTTTCACTAAAAGATGCCATTAAAGAGAACTTCACCGTCATCGACAACGTTCAATGGTTCGAGGTGCTCGAGGGGAAGCAAGGCAAGTCATTGCCTTCCCTCCAATTGATGGGGCTTGGAAAATTGGCAAAAGAGAAGGCGAGAATGTTGTCGATGGGGCAACGGAAACGACTTCAGCTAGCAAGATTGTTGGCCCTTGACAGACCAATTTGGCTGCTTGATGAGCCTTCAGTTGCATTAGATGATGATGGGGTGAAGCTGCTGGAATACATCATTGCAGAGCATAGAAAGAAAGGTGGAATTGTTATTGTAGCAACACATATTCCAATAAAGATTGAAGATGCCATGATCTTGAGGCTTCCACCGCGGTTCCCACGGAGAATGACATTGGTTGATATGCTTGATCGGGCTGACATATCATAG

Coding sequence (CDS)

ATGTCTCTCAGGAAGCCACCACTTCCTCGCCTTCTACTCAACCAGGTCTCTTGCATGCGGAATGCCCAACAAATCCTTAGAAATGTTAACGTCTCGATCCATGATGGCAGTGCGCTCGTGTTAACCGGGACCAATGGTTCAGGTAAAACGACATTCCTACGAATGTTAGCTGGATTCTCTCGGCCTTCTACAGGTGAGATCCTATGGAATGGCCATGACATTACAGAATCAGGAGTGTTCCATCAATACAAGCTTCAGCTGAACTGGCTTTCACTAAAAGATGCCATTAAAGAGAACTTCACCGTCATCGACAACGTTCAATGGTTCGAGGTGCTCGAGGGGAAGCAAGGCAAGTCATTGCCTTCCCTCCAATTGATGGGGCTTGGAAAATTGGCAAAAGAGAAGGCGAGAATGTTGTCGATGGGGCAACGGAAACGACTTCAGCTAGCAAGATTGTTGGCCCTTGACAGACCAATTTGGCTGCTTGATGAGCCTTCAGTTGCATTAGATGATGATGGGGTGAAGCTGCTGGAATACATCATTGCAGAGCATAGAAAGAAAGGTGGAATTGTTATTGTAGCAACACATATTCCAATAAAGATTGAAGATGCCATGATCTTGAGGCTTCCACCGCGGTTCCCACGGAGAATGACATTGGTTGATATGCTTGATCGGGCTGACATATCATAG

Homology

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BLAST of CmoCh06G008420 vs. Swiss-Prot
Match: AB1I_ARATH (ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.4e-110
Identity = 194/229 (84.72%), Postives = 217/229 (94.76%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MS+R+P +PRLLL  VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGK+TFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHDIT+SG+F QYKLQLNW+SLKDAIKE FTV+DNVQWFE+LE K GK+ 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+L KEK+RMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GV+LLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATH+PI IEDAMILRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIDIEDAMILRLPPRFPRKMTLIDMLDRADIS 229

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BLAST of CmoCh06G008420 vs. Swiss-Prot
Match: CCMA_MAGSA (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ccmA PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.7e-32
Identity = 77/199 (38.69%), Postives = 121/199 (60.80%), Query Frame = 1


Query: 16  VSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDIT 75
           ++C+R  + +   +  S+  G ALVL G NGSGK++ LR+LAG  +P+ G + WNG  + 
Sbjct: 11  LACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHGLLAWNGEALA 70

Query: 76  ESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEG----KQGKSLPS-LQLMGLGK 135
           E    H  +   ++L   DA+K   +V +N++++  L      + G+++ + L   GL +
Sbjct: 71  EDPEAHAART--HYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAALSRFGLAR 130

Query: 136 LAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKKGGI 195
           LA    +MLS GQ++R  LARLLA   P+WLLDEP+ ALD   +K+LE ++AEHR  GG+
Sbjct: 131 LATIPGKMLSAGQKRRTNLARLLAAPSPLWLLDEPTTALDKASIKVLEDVLAEHRAAGGM 190

Query: 196 VIVATHIPIKIEDAMILRL 210
           V+++TH  I +  A  L L
Sbjct: 191 VVLSTHADINMPGAQELHL 207

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BLAST of CmoCh06G008420 vs. Swiss-Prot
Match: CCMA_NITMU (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=ccmA PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-29
Identity = 77/205 (37.56%), Postives = 117/205 (57.07%), Query Frame = 1


Query: 8   LPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEI 67
           +P L    ++C+R  +++   VN  +  G  + + G NGSGKT+ LRML G + P+ GEI
Sbjct: 1   MPTLEGIDLTCIRGDRKLFSGVNFLLESGGLMQVQGPNGSGKTSLLRMLCGLASPAEGEI 60

Query: 68  LWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEG---KQGKSLPSLQ 127
            W+G  I   G    Y   + +L     +K++ T I+N++    L G    + K+  +LQ
Sbjct: 61  RWDGTQIRSLG--GDYFGAMTYLGHLGGVKDDLTAIENLRISSALGGVDLDERKAHDALQ 120

Query: 128 LMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEH 187
            MGLG      A++LS GQR+R+ LARLL     +W+LDEP  ALD   VKL++ +I  H
Sbjct: 121 HMGLGGRELLPAKVLSQGQRRRVTLARLLVCGTVLWILDEPLTALDTSAVKLVQGLIERH 180

Query: 188 RKKGGIVIVATHIPIKIEDAMILRL 210
            + GG++++ TH  I+I  A I RL
Sbjct: 181 LEHGGMIVMTTHQEIEIAGAAIQRL 203

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BLAST of CmoCh06G008420 vs. Swiss-Prot
Match: CCMA_ECO57 (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Escherichia coli O157:H7 GN=ccmA PE=3 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 8.5e-29
Identity = 68/199 (34.17%), Postives = 114/199 (57.29%), Query Frame = 1


Query: 11  LLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWN 70
           L + ++ C R+ + +   ++ +++ G  + +TG+NG+GKTT LR+L G SRP  GE+LW 
Sbjct: 4   LEVRELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQ 63

Query: 71  GHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSLPSLQLMGLGK 130
           G  + +  V   Y   L W+  +  IK   T ++N+ ++   +G   + L +L   GL  
Sbjct: 64  GQPLHQ--VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAG 123

Query: 131 LAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKKGGI 190
                   LS GQ++R+ LARL      +W+LDEP  A+D +GV  L   +A+H ++GGI
Sbjct: 124 FEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGI 183

Query: 191 VIVATHIPIKIEDAMILRL 210
           VI+ TH P+ + ++ I R+
Sbjct: 184 VILTTHQPLNVAESKIRRI 199

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BLAST of CmoCh06G008420 vs. Swiss-Prot
Match: CCMA_SHIBS (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Shigella boydii serotype 4 (strain Sb227) GN=ccmA PE=3 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 67/195 (34.36%), Postives = 112/195 (57.44%), Query Frame = 1


Query: 15  QVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDI 74
           ++ C R+ + +   ++ +++ G  + +TG+NG+GKTT LR+L G SRP  GE+LW G  +
Sbjct: 8   ELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPL 67

Query: 75  TESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSLPSLQLMGLGKLAKE 134
            +  V   Y   L W+  +  IK   T ++N+ ++   +G   + L +L   GL      
Sbjct: 68  HQ--VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAGFEDI 127

Query: 135 KARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKKGGIVIVA 194
               LS GQ++R+ LARL      +W+LDEP  A+D +GV  L   +A+H ++GGIVI+ 
Sbjct: 128 PVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILT 187

Query: 195 THIPIKIEDAMILRL 210
           TH P+ + ++ I R+
Sbjct: 188 THQPLNVAESKIRRI 199

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BLAST of CmoCh06G008420 vs. TrEMBL
Match: A0A068UPK8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030858001 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 7.1e-115
Identity = 207/228 (90.79%), Postives = 222/228 (97.37%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+PPLPRLLLN VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPPLPRLLLNNVSCMRNAQQILRHVNVSVHDGGALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHD+TESGVFHQYKLQLNWLSLKDAIK+ FTV+DNVQWFEVLEGKQG+SL
Sbjct: 61  KPSAGEILWNGHDVTESGVFHQYKLQLNWLSLKDAIKDKFTVLDNVQWFEVLEGKQGRSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADI 229
           IAEHRKKGGIVIVATH+PIKI+DAMILRLPPRFPRRMTLVDMLDR  +
Sbjct: 181 IAEHRKKGGIVIVATHLPIKIDDAMILRLPPRFPRRMTLVDMLDRGGL 228

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BLAST of CmoCh06G008420 vs. TrEMBL
Match: A0A0A0L2C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073860 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.2e-114
Identity = 208/229 (90.83%), Postives = 223/229 (97.38%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPP PRLLL+QVSCMRNAQQILRNVNVSIHDGSALVL+G+NGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPPPRLLLDQVSCMRNAQQILRNVNVSIHDGSALVLSGSNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS G ILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFT+IDNVQWFE+LEGK GKS+
Sbjct: 61  RPSAGRILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTIIDNVQWFELLEGKHGKSM 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+++LMGLG+LAKEKA+MLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PAIELMGLGRLAKEKAKMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHR+KGGIVIVATHIPI IED+MILRLPPRFPRR+TLVDMLDR DIS
Sbjct: 181 IAEHRRKGGIVIVATHIPIDIEDSMILRLPPRFPRRITLVDMLDRCDIS 229

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BLAST of CmoCh06G008420 vs. TrEMBL
Match: A0A0G4AN81_9ROSI (AT1G63270-like protein OS=Melianthus villosus PE=2 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.3e-113
Identity = 205/229 (89.52%), Postives = 222/229 (96.94%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPP PRLL++ VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGK+TFLRMLAGFS
Sbjct: 1   MSLRKPPHPRLLIDNVSCMRNAQQILRHVNVSVHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS G+ILWNGHDIT+SGVFHQYKLQLNWLSL+DAIKE FTV+DNVQWFEVLEGKQGKSL
Sbjct: 61  KPSAGQILWNGHDITQSGVFHQYKLQLNWLSLRDAIKETFTVLDNVQWFEVLEGKQGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEK RMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GVKLLEYI
Sbjct: 121 PALELMGLGRLAKEKTRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATH+PIKI+DAM LRLPPRFPRRMTLVDMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIKIDDAMFLRLPPRFPRRMTLVDMLDRADIS 229

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BLAST of CmoCh06G008420 vs. TrEMBL
Match: A0A061GR36_THECC (Non-intrinsic ABC protein 10 OS=Theobroma cacao GN=TCM_037087 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.7e-113
Identity = 203/229 (88.65%), Postives = 222/229 (96.94%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPPLPR+LLN VSCMRNAQQILR+VNVS+HDG ALVLTG+NGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPLPRILLNDVSCMRNAQQILRHVNVSVHDGGALVLTGSNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS G+ILWNGHDIT+SG+FHQYKLQLNWLSLKDA+KE FTV+DNVQWFE+LEGK GKSL
Sbjct: 61  RPSAGQILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEILEGKHGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GV+LLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATH+PI IEDAM LRLPPRFPRRMTLVDMLDR+DI+
Sbjct: 181 IAEHRKKGGIVIVATHLPIHIEDAMNLRLPPRFPRRMTLVDMLDRSDIA 229

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BLAST of CmoCh06G008420 vs. TrEMBL
Match: V4UW12_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009382mg PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 3.9e-113
Identity = 205/229 (89.52%), Postives = 221/229 (96.51%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           M+LRKPPLPRLLL  VSCMRNAQQILR+VN+SIHDG ALVLTGTNGSGK+TFLRMLAGFS
Sbjct: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHDIT+SG+FHQYKLQLNWLSLKDA+KE FTV+DNVQWFEVLEGKQG SL
Sbjct: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALD DGV+LLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATH+PI+IEDAM LRLPPRFPRRMTLVDMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229

[Close]

BLAST of CmoCh06G008420 vs. TAIR10
Match: AT1G63270.1 (AT1G63270.1 non-intrinsic ABC protein 10)

HSP 1 Score: 398.7 bits (1023), Expect = 2.5e-111
Identity = 194/229 (84.72%), Postives = 217/229 (94.76%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MS+R+P +PRLLL  VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGK+TFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHDIT+SG+F QYKLQLNW+SLKDAIKE FTV+DNVQWFE+LE K GK+ 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+L KEK+RMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GV+LLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATH+PI IEDAMILRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIDIEDAMILRLPPRFPRKMTLIDMLDRADIS 229

[Close]

BLAST of CmoCh06G008420 vs. TAIR10
Match: AT1G67940.1 (AT1G67940.1 non-intrinsic ABC protein 3)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-15
Identity = 60/184 (32.61%), Postives = 94/184 (51.09%), Query Frame = 1


Query: 21  NAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGVF 80
           +  +IL+ V + I  G  + + G +GSGK+TFLR L     P    +  +G DIT   V 
Sbjct: 40  DGSRILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVI 99

Query: 81  HQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSLPSLQLMGLGKL----AKEKA 140
              + ++  L     + +  TV DNV++   L G++       +L+ L  L    AK+  
Sbjct: 100 -ALRRRVGMLFQLPVLFQG-TVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTG 159

Query: 141 RMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKKGGIVIVATH 200
             LS+GQ +R+ LAR LA +  + LLDEP+ ALD    + +E +I + +K+ GI  V   
Sbjct: 160 AELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVS 219

[Close]

BLAST of CmoCh06G008420 vs. TAIR10
Match: AT2G41700.1 (AT2G41700.1 ATP-binding cassette A1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-12
Identity = 49/176 (27.84%), Postives = 92/176 (52.27%), Query Frame = 1


Query: 26  LRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGVFHQYKL 85
           + ++ +++++   L L G NG+GK+T + ML G   P++G+ L  G+ I  +    + + 
Sbjct: 568 VNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITN--MDEIRK 627

Query: 86  QLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSLPS-----LQLMGLGKLAKEKARMLS 145
           +L      D +    TV ++++ F VL+G +  SL S      + +GL        R LS
Sbjct: 628 ELGVCPQHDILFPELTVREHLEMFAVLKGVEEGSLKSTVVDMAEEVGLSDKINTLVRALS 687

Query: 146 MGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKKGGIVIVATH 197
            G +++L L   L  +  + +LDEP+  +D   ++L   +I +  KKG I+++ TH
Sbjct: 688 GGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLI-KKIKKGRIILLTTH 740

[Close]

BLAST of CmoCh06G008420 vs. TAIR10
Match: AT1G27940.1 (AT1G27940.1 P-glycoprotein 13)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-12
Identity = 55/199 (27.64%), Postives = 99/199 (49.75%), Query Frame = 1


Query: 25  ILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGVFHQYK 84
           +  N++ +I  G      G +GSGK+T + M+  F  P++GEIL +G+DI +S     ++
Sbjct: 388 VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDI-KSLKLKWFR 447

Query: 85  LQLNWLSLKDA-----IKENFTV-IDNVQWFEVLEGKQG-------KSLPSLQLMGLGKL 144
            QL  +S + A     I  N  +  +N    +++E  +        KSLP+    G    
Sbjct: 448 EQLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPN----GYNTQ 507

Query: 145 AKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKKGGIV 204
             E    LS GQ++R+ +AR +  +  I LLDE + ALD +  K+++  +    +K   +
Sbjct: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTI 567

Query: 205 IVATHIPI--KIEDAMILR 209
           +VA  +     ++  ++LR
Sbjct: 568 VVAHRLSTIRNVDKIVVLR 581

[Close]

BLAST of CmoCh06G008420 vs. TAIR10
Match: AT1G28010.1 (AT1G28010.1 P-glycoprotein 14)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-11
Identity = 53/206 (25.73%), Postives = 95/206 (46.12%), Query Frame = 1


Query: 25  ILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGVFHQYK 84
           +  N++ +IH G      G +GSGK+T + M+  F  P +GEIL +G+DI          
Sbjct: 389 VFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIK--------N 448

Query: 85  LQLNWLSLKDAIKEN------FTVIDNV-------QWFEVLEGKQG-------KSLPSLQ 144
           L+L WL  +  +          T+  N+          +++E  +        KSLP+  
Sbjct: 449 LKLKWLREQMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPN-- 508

Query: 145 LMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEH 204
             G      E    LS GQ++R+ +AR +  +  I LLDE + ALD +  K+++  +   
Sbjct: 509 --GYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNV 568

Query: 205 RKKGGIVIVATHIPI--KIEDAMILR 209
            +K   +++A  +     ++  ++LR
Sbjct: 569 MEKRTTIVIAHRLSTIRNVDKIVVLR 582

[Close]

BLAST of CmoCh06G008420 vs. NCBI nr
Match: gi|659096503|ref|XP_008449132.1| (PREDICTED: ABC transporter I family member 1 [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 3.5e-115
Identity = 210/229 (91.70%), Postives = 222/229 (96.94%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR PPLPRLLL+QVSCMRNAQQILRNVNVSIHDGSALVL+GTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRGPPLPRLLLDQVSCMRNAQQILRNVNVSIHDGSALVLSGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS G ILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFT+IDNVQWFEVLEGK G+S+
Sbjct: 61  RPSAGRILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTIIDNVQWFEVLEGKHGRSM 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+++LMGLG+LAKEKA+MLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PAIELMGLGRLAKEKAKMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATHIPI IEDAMILRLPPRFPRR+TL DMLDR DIS
Sbjct: 181 IAEHRKKGGIVIVATHIPIDIEDAMILRLPPRFPRRITLADMLDRCDIS 229

[Close]

BLAST of CmoCh06G008420 vs. NCBI nr
Match: gi|661886285|emb|CDP10207.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 421.4 bits (1082), Expect = 1.0e-114
Identity = 207/228 (90.79%), Postives = 222/228 (97.37%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+PPLPRLLLN VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPPLPRLLLNNVSCMRNAQQILRHVNVSVHDGGALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHD+TESGVFHQYKLQLNWLSLKDAIK+ FTV+DNVQWFEVLEGKQG+SL
Sbjct: 61  KPSAGEILWNGHDVTESGVFHQYKLQLNWLSLKDAIKDKFTVLDNVQWFEVLEGKQGRSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADI 229
           IAEHRKKGGIVIVATH+PIKI+DAMILRLPPRFPRRMTLVDMLDR  +
Sbjct: 181 IAEHRKKGGIVIVATHLPIKIDDAMILRLPPRFPRRMTLVDMLDRGGL 228

[Close]

BLAST of CmoCh06G008420 vs. NCBI nr
Match: gi|449463240|ref|XP_004149342.1| (PREDICTED: ABC transporter I family member 1 [Cucumis sativus])

HSP 1 Score: 420.6 bits (1080), Expect = 1.7e-114
Identity = 208/229 (90.83%), Postives = 223/229 (97.38%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPP PRLLL+QVSCMRNAQQILRNVNVSIHDGSALVL+G+NGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPPPRLLLDQVSCMRNAQQILRNVNVSIHDGSALVLSGSNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS G ILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFT+IDNVQWFE+LEGK GKS+
Sbjct: 61  RPSAGRILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTIIDNVQWFELLEGKHGKSM 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+++LMGLG+LAKEKA+MLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PAIELMGLGRLAKEKAKMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHR+KGGIVIVATHIPI IED+MILRLPPRFPRR+TLVDMLDR DIS
Sbjct: 181 IAEHRRKGGIVIVATHIPIDIEDSMILRLPPRFPRRITLVDMLDRCDIS 229

[Close]

BLAST of CmoCh06G008420 vs. NCBI nr
Match: gi|836712855|gb|AKM76517.1| (AT1G63270-like protein [Melianthus villosus])

HSP 1 Score: 417.2 bits (1071), Expect = 1.9e-113
Identity = 205/229 (89.52%), Postives = 222/229 (96.94%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPP PRLL++ VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGK+TFLRMLAGFS
Sbjct: 1   MSLRKPPHPRLLIDNVSCMRNAQQILRHVNVSVHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS G+ILWNGHDIT+SGVFHQYKLQLNWLSL+DAIKE FTV+DNVQWFEVLEGKQGKSL
Sbjct: 61  KPSAGQILWNGHDITQSGVFHQYKLQLNWLSLRDAIKETFTVLDNVQWFEVLEGKQGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEK RMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GVKLLEYI
Sbjct: 121 PALELMGLGRLAKEKTRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATH+PIKI+DAM LRLPPRFPRRMTLVDMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIKIDDAMFLRLPPRFPRRMTLVDMLDRADIS 229

[Close]

BLAST of CmoCh06G008420 vs. NCBI nr
Match: gi|590572890|ref|XP_007011970.1| (Non-intrinsic ABC protein 10 [Theobroma cacao])

HSP 1 Score: 416.8 bits (1070), Expect = 2.5e-113
Identity = 203/229 (88.65%), Postives = 222/229 (96.94%), Query Frame = 1


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPPLPR+LLN VSCMRNAQQILR+VNVS+HDG ALVLTG+NGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPLPRILLNDVSCMRNAQQILRHVNVSVHDGGALVLTGSNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS G+ILWNGHDIT+SG+FHQYKLQLNWLSLKDA+KE FTV+DNVQWFE+LEGK GKSL
Sbjct: 61  RPSAGQILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEILEGKHGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GV+LLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHIPIKIEDAMILRLPPRFPRRMTLVDMLDRADIS 230
           IAEHRKKGGIVIVATH+PI IEDAM LRLPPRFPRRMTLVDMLDR+DI+
Sbjct: 181 IAEHRKKGGIVIVATHLPIHIEDAMNLRLPPRFPRRMTLVDMLDRSDIA 229

The following BLAST results are available for this feature:

BLAST of CmoCh06G008420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB1I_ARATH	4.4e-110	84.72	ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1	[more]
CCMA_MAGSA	3.7e-32	38.69	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Magnetospirillum magn...	[more]
CCMA_NITMU	1.3e-29	37.56	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Nitrosospira multifor...	[more]
CCMA_ECO57	8.5e-29	34.17	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Escherichia coli O157...	[more]
CCMA_SHIBS	1.1e-28	34.36	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Shigella boydii serot...	[more]

BLAST of CmoCh06G008420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068UPK8_COFCA	7.1e-115	90.79	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030858001 PE=4 SV=1	[more]
A0A0A0L2C2_CUCSA	1.2e-114	90.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073860 PE=4 SV=1	[more]
A0A0G4AN81_9ROSI	1.3e-113	89.52	protein OS=Melianthus villosus PE=2 SV=1	[more]
A0A061GR36_THECC	1.7e-113	88.65	Non-intrinsic ABC protein 10 OS=Theobroma cacao GN=TCM_037087 PE=4 SV=1	[more]
V4UW12_9ROSI	3.9e-113	89.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009382mg PE=4 SV=1	[more]

BLAST of CmoCh06G008420 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63270.1	2.5e-111	84.72	non-intrinsic ABC protein 10	[more]
AT1G67940.1	2.6e-15	32.61	non-intrinsic ABC protein 3	[more]
AT2G41700.1	1.5e-12	27.84	ATP-binding cassette A1	[more]
AT1G27940.1	3.4e-12	27.64	P-glycoprotein 13	[more]
AT1G28010.1	1.3e-11	25.73	P-glycoprotein 14	[more]

BLAST of CmoCh06G008420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096503\|ref\|XP_008449132.1\|	3.5e-115	91.70	PREDICTED: ABC transporter I family member 1 [Cucumis melo]	[more]
gi\|661886285\|emb\|CDP10207.1\|	1.0e-114	90.79	unnamed protein product [Coffea canephora]	[more]
gi\|449463240\|ref\|XP_004149342.1\|	1.7e-114	90.83	PREDICTED: ABC transporter I family member 1 [Cucumis sativus]	[more]
gi\|836712855\|gb\|AKM76517.1\|	1.9e-113	89.52	protein [Melianthus villosus]	[more]
gi\|590572890\|ref\|XP_007011970.1\|	2.5e-113	88.65	Non-intrinsic ABC protein 10 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003439	ABC_transporter-like
IPR003593	AAA+_ATPase
IPR005895	ABC_transptr_haem_export_CcmA
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0016887	ATPase activity
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0017004	cytochrome complex assembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0030288	outer membrane-bounded periplasmic space

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006810	transport
cellular_component	GO:0030288	outer membrane-bounded periplasmic space
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0015439	heme-transporting ATPase activity
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0005215	transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G008420.1	CmoCh06G008420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 26..166 score: 6.9
IPR003439	ABC transporter-like	PROFILE	PS50893	ABC_TRANSPORTER_2	coord: 11..228 score: 15
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 35..223 score: 3.9
IPR005895	ABC transporter, haem export, CcmA	TIGRFAMs	TIGR01189	TIGR01189	coord: 13..209 score: 7.3
IPR005895	ABC transporter, haem export, CcmA	PROFILE	PS51243	CCMA	coord: 11..209 score: 63
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 14..202 score: 6.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 10..197 score: 2.33
None	No IPR available	PANTHER	PTHR24220	FAMILY NOT NAMED	coord: 12..228 score: 7.9E
None	No IPR available	PANTHER	PTHR24220:SF508	ABC TRANSPORTER I FAMILY MEMBER 1	coord: 12..228 score: 7.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G008420	Cp4.1LG08g06900	Cucurbita pepo (Zucchini)	cmocpeB795
CmoCh06G008420	Carg12052	Silver-seed gourd	carcmoB0770

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G008420	Watermelon (97103) v2	cmowmbB819
CmoCh06G008420	Watermelon (97103) v2	cmowmbB848
CmoCh06G008420	Wax gourd	cmowgoB0973
CmoCh06G008420	Cucurbita moschata (Rifu)	cmocmoB294
CmoCh06G008420	Cucurbita moschata (Rifu)	cmocmoB438
CmoCh06G008420	Cucumber (Gy14) v1	cgycmoB0875
CmoCh06G008420	Cucumber (Gy14) v1	cgycmoB0893
CmoCh06G008420	Cucurbita maxima (Rimu)	cmacmoB343
CmoCh06G008420	Cucurbita maxima (Rimu)	cmacmoB533
CmoCh06G008420	Cucurbita maxima (Rimu)	cmacmoB623
CmoCh06G008420	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G008420	Wild cucumber (PI 183967)	cmocpiB828
CmoCh06G008420	Wild cucumber (PI 183967)	cmocpiB823
CmoCh06G008420	Cucumber (Chinese Long) v2	cmocuB815
CmoCh06G008420	Cucumber (Chinese Long) v2	cmocuB820
CmoCh06G008420	Melon (DHL92) v3.5.1	cmomeB746
CmoCh06G008420	Melon (DHL92) v3.5.1	cmomeB756
CmoCh06G008420	Watermelon (Charleston Gray)	cmowcgB730
CmoCh06G008420	Watermelon (Charleston Gray)	cmowcgB722
CmoCh06G008420	Watermelon (97103) v1	cmowmB773
CmoCh06G008420	Watermelon (97103) v1	cmowmB777
CmoCh06G008420	Cucurbita pepo (Zucchini)	cmocpeB770
CmoCh06G008420	Cucurbita pepo (Zucchini)	cmocpeB792
CmoCh06G008420	Bottle gourd (USVL1VR-Ls)	cmolsiB755
CmoCh06G008420	Bottle gourd (USVL1VR-Ls)	cmolsiB766
CmoCh06G008420	Cucumber (Gy14) v2	cgybcmoB414
CmoCh06G008420	Cucumber (Gy14) v2	cgybcmoB409
CmoCh06G008420	Melon (DHL92) v3.6.1	cmomedB848
CmoCh06G008420	Melon (DHL92) v3.6.1	cmomedB861
CmoCh06G008420	Silver-seed gourd	carcmoB0963
CmoCh06G008420	Silver-seed gourd	carcmoB1059
CmoCh06G008420	Cucumber (Chinese Long) v3	cmocucB0961
CmoCh06G008420	Cucumber (Chinese Long) v3	cmocucB0966