CmoCh06G008410 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCCTTCTCTTCCCATTTTTCGAAAGCATCGCCTAAAATCCGCAGCGGCGTCGGCGCCGACCGTCATTTTTCTCGGCAATCGGCTAAAATCTGCAACAGTTCGAAAGAGGAGATTTGGTGCTATCAATCAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACATTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGTGAGCTTTGATATCTGTTGTTTTCTTGTTGAAGCTTTTATCATCCACTGTTTGTTGTTCTTGTTAGCTGGATTGTATCTGTAAATCTCATGATCACTGTATTAACTGAGAATTGGATGCCTTTAATTAGCTTGTTCGCGTGTTCTTGGATTGTTTCAAAGGTGATAAAAGTGGCTTTGGTTAATTTAGTTGAAGTTCCAAGTAAACCTTTGTACTTAAGAACTGCAAATCATTGAAATGGTGGCTGTATTTGCTCATGGTTAATGATGTAGAACCAGTTTGCTTGATAAAAATTAAGCTTATAAACACTACTTTCATTCATGAATTTTGTTTTTGTTTTTTTATCCAGTATCTACCAATATTTTCGTAATTCAAGCTTAGTTTTATGAGATCCCACATTGGTTGGAGAGGAGAACAAAACATTCTTTATAAGAGTGTGGAAGGTGGAAACCTCTCCCTAGCATGCGTGTTTTAGAAACCTTGAAGGGAAGCCTGAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGTGGTGGGCTTGGGCCATAACAAATGATTTAGAGCTAGACACCGGGCAATATCCAACGAGGAGGCTGAGCTCCAAAGGGGTGGACATGGGTGGTGTGCCAGCAAGGACGCTGGCCTCGAAGGGGGGTGGATTGGGGGGTCCCACATTGATTGGAGAAGGGAATGAGTGCCAACAAAGACGTGCCATGAAGGGTGGTGGATTGTGAGATCTCACATCGGTTGGAGATGAGAACGAAACATTCTTTATGAGGGTATGGAAACCTCTCCCTAGGAGACGCGTTTTAAAAATCTTGAGGAGAAATCCCAAAGAGAACAATATCTGTTAGCGGTAAGCTTGGGCTGTTACAAGTTTTGTGAGCTAAAAAGAACGTTTTCTTTATGAAAAAAAAAAGGATTTTGATGAAGAATTCCATTAGAGTAAGAAATTATTAGAAAACGAGCATAAATTTCAAAAACGAAATCATTAACTGGATAATAGCTTTGAGCTTTTGATATTGGAATGAAAGAAATATCATGTGATTTTGTGATTTCTTTTCTTATGAAGACGTAGGTGAGTTTATTCAGTTTCAGGCTTCTGTATGTTAACTCTATCTGATGCTTTCCAAAAGAGCAGTGACCCTAATAAGTCCTCTTAGTTATTACTTACTGCACATATTTCTGATAAATTGTTCATAACTCAAGGGAATCATTATCTATTCTCTTAATACGAATGGGTCGTCCGACGTTACTACCTCTAGTTGCCAAGATAACTCGTCGGATATTATTATAGGTAGATGGTCTCCATAGCTTAAACTACGAACCACAAACCTCCCATCTATGTAGTGAGTTCTTCCTTCATGATTGTTGTCACCTCAAATGAAGCTTCTGATCTTTTAGCTTCAGTCATCTAGCCACCTTATTGGGGACCTCAACAATAGAAAAGAAGGTTGGAATGCTTGAGAAGATTACTCGGACTAGGTTAATCGATCTCCCTTAAGCGGTTGTAGTTATGCTATGATATTGATTTTATTTCCGGGTCGAAAAATATGCTTACAAGCCTGCATGATTTAAATGTTAATCCATCCCCTGAATATTGACTCCTGACCTTATGATCCTTGTATATAACTTGATGGCTATTAGACCCAACTAGCTGAATATGACTTGATGACTCAGTTGGAACTATCAAAAGTCGAAGTCGATACCCAAACTCTGTTGTGTGTCATGAACACAATATCGTAGGAGTTCTAAACTAGAGCTTGTATTCATCTGATGTATTGTCAAGTTTCGTGACGCTTTTGTGGGATCGACGAAAAAAATTTGATCTATTTATTTGTAGTGGATGTCAGAATCAATCAATGACATTGTTATTCTTTCTTGTATGGTAAAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAGGAGTTACATTACCTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACACAAAATATGGCCTGGAATTCCTTAGCGAAGACGATGGAAAGAATGAACTTAACAAATTTCCTCGATTTAAAATGATTGGTGATGACGACGCAGATGAAGAAGATGACGACGACGACGATGATGACGAAGAATACGACGTGGAGCAAGAAGAGAGGACAACTGAGTGAATTTTGGTTGTGTCTATTATGATAGCCCAAGTATGAACTTAGTGAAGGGACCTCTGGTACCGTTCTTGTGATATTGTAGGCAGACAAATAAAGAGATGGGTGGTTTCTTTAGTTTGTCCATATCATCTGATTCTCTGAAACAAAGATCCATAAATGCCTTTTGCCTGTTTGTGGGATGTTTTTGTTGAGATGTCAGGTCTTGGGTTCGAGCCTCTAGATGAAAAGTTTATGTAATGAATATCTCATCGTCTTTTAAAACTTTGCTTTTTCGTTGAAGTTTTATATCTTAACCCGTTGAGTTAAAGCTAATGTAGTGTAATATTGCTTCTATTAGCATAGAATGGAATGAATCTCGAGCAGTTATGACATTGTTGGAAAAGATCTTTTTGAGATCATCCAAGACAATTTTATTTTAAGTAATATCAATTCAAATATAGTTCCGTGGTGTGTAATATTGTCCGTTGTGTG CGCCTTCTCTTCCCATTTTTCGAAAGCATCGCCTAAAATCCGCAGCGGCGTCGGCGCCGACCGTCATTTTTCTCGGCAATCGGCTAAAATCTGCAACAGTTCGAAAGAGGAGATTTGGTGCTATCAATCAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACATTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGAATCATTATCTATTCTCTTAATACGAATGGGTCGTCCGACGTTACTACCTCTAGTTGCCAAGATAACTCGTCGGATATTATTATAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAGGAGTTACATTACCTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACACAAAATATGGCCTGGAATTCCTTAGCGAAGACGATGGAAAGAATGAACTTAACAAATTTCCTCGATTTAAAATGATTGGTGATGACGACGCAGATGAAGAAGATGACGACGACGACGATGATGACGAAGAATACGACGTGGAGCAAGAAGAGAGGACAACTGAGTGAATTTTGGTTGTGTCTATTATGATAGCCCAAGTATGAACTTAGTGAAGGGACCTCTGGTACCGTTCTTGTGATATTGTAGGCAGACAAATAAAGAGATGGGTGGTTTCTTTAGTTTGTCCATATCATCTGATTCTCTGAAACAAAGATCCATAAATGCCTTTTGCCTGTTTGTGGGATGTTTTTGTTGAGATGTCAGGTCTTGGGTTCGAGCCTCTAGATGAAAAGTTTATGTAATGAATATCTCATCGTCTTTTAAAACTTTGCTTTTTCGTTGAAGTTTTATATCTTAACCCGTTGAGTTAAAGCTAATGTAGTGTAATATTGCTTCTATTAGCATAGAATGGAATGAATCTCGAGCAGTTATGACATTGTTGGAAAAGATCTTTTTGAGATCATCCAAGACAATTTTATTTTAAGTAATATCAATTCAAATATAGTTCCGTGGTGTGTAATATTGTCCGTTGTGTG ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACATTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGAATCATTATCTATTCTCTTAATACGAATGGGTCGTCCGACGTTACTACCTCTAGTTGCCAAGATAACTCGTCGGATATTATTATAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAGGAGTTACATTACCTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGA
BLAST of CmoCh06G008410 vs. TrEMBL
Match: I3NMK1_HEVBR (30S ribosomal protein S6B OS=Hevea brasiliensis GN=RPS6B PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24 Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1
BLAST of CmoCh06G008410 vs. TrEMBL
Match: A0A0A0L2X6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073850 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 3.2e-24 Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1
BLAST of CmoCh06G008410 vs. TrEMBL
Match: I3NMK0_HEVBR (30S ribosomal protein S6A OS=Hevea brasiliensis GN=RPS6A PE=2 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 3.2e-24 Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1
BLAST of CmoCh06G008410 vs. TrEMBL
Match: M5WAU7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012847mg PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 5.4e-24 Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1
BLAST of CmoCh06G008410 vs. TrEMBL
Match: A0A0V0HGA4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 7.0e-24 Identity = 52/62 (83.87%), Postives = 61/62 (98.39%), Query Frame = 1
BLAST of CmoCh06G008410 vs. TAIR10
Match: AT3G18760.1 (AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein) HSP 1 Score: 105.1 bits (261), Expect = 3.1e-23 Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 1
BLAST of CmoCh06G008410 vs. NCBI nr
Match: gi|659096505|ref|XP_008449133.1| (PREDICTED: 37S ribosomal protein MRP17, mitochondrial [Cucumis melo]) HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24 Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1
BLAST of CmoCh06G008410 vs. NCBI nr
Match: gi|313586455|gb|ADR71238.1| (30S ribosomal protein S6B [Hevea brasiliensis]) HSP 1 Score: 119.8 bits (299), Expect = 3.5e-24 Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1
BLAST of CmoCh06G008410 vs. NCBI nr
Match: gi|778676012|ref|XP_011650517.1| (PREDICTED: uncharacterized protein LOC101218568 [Cucumis sativus]) HSP 1 Score: 119.4 bits (298), Expect = 4.5e-24 Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1
BLAST of CmoCh06G008410 vs. NCBI nr
Match: gi|313586453|gb|ADR71237.1| (30S ribosomal protein S6A [Hevea brasiliensis]) HSP 1 Score: 119.4 bits (298), Expect = 4.5e-24 Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1
BLAST of CmoCh06G008410 vs. NCBI nr
Match: gi|645244093|ref|XP_008228280.1| (PREDICTED: uncharacterized protein LOC103327696 [Prunus mume]) HSP 1 Score: 118.6 bits (296), Expect = 7.7e-24 Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |