CmoCh06G006830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G006830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nuclear transcription factor Y subunit B-9-like protein
Location	Cmo_Chr06 : 3472988 .. 3474614 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGGTATTTTCATCTCCAAAATTCCCCTTTTACCCTTCGCTTGCACGTTCTATCTCTACATATATTACGTTTTGGTTTCCATTTGTGACATGCATCAAGATCTCTTCATCTTCATCATTTTTGGTTAGTTTCTATTGATTTAGATTTGCATGTATCAAAAAGCTTCAATTTGCCTTCTCTTTCTAATATCTTAATATTTTCGTACAAAGCTCAACTCGGACTTGAATTTCAATGAAAGAGAGCCATTAGCATGGTACACAGGACCAAAATTGAAACCCTAATTTGAAAACACTGGTCGGTTGATTGAACGTTTGAAAAAAAACTAAGTCACGGTGGATAATTTTTAGACTATTGTGTTGTGTTACATGCCATGGCTCCGTGGAGCCAGAAATTTTTTGTAAATAAATTTAAATTTATAGTTTTTTTTGGTACACGTCTTTAATATAATTTTTTTGTCAGATGTGTGAGTTGGCAGTATTGGTGCGTGGCTAATTAACAAATAAAAAAAGGAAAAAATAATAATAAATAAAGGTTAATATCTATGGTCTTTCTGCCCATACAAATAGTAGAAAACTTCTTGCCCTAATTCAGTCTTTTATTCTCCATAACCAAATAATTAACTTACTTCCTTTTTTTACTCCACTTACTTTTTTCAAGCGTTGGGGCCTGATTGATTATTGGTAGTTAATGTAATGAATATATATTTTAATATTTATTATATGAAAATGAAATAATTATAAAAGATTAAAACATTAAGAATTGAATTAAAACTTTGTAATTATTGAGATTATTTATTTAATTTCGTTTTAATTGGTTCTGTCAATTAAAATCTTAAATTATGCTAAATTGATTTATGAAAATTTAAGCTTTTTAATATTTGTTTGATGAATCTGTATAAAGCATTTGGTTTCAGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA

mRNA sequence

ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA

Coding sequence (CDS)

ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA

Homology

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BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 4.5e-49
Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 1


Query: 59  SPVTGSIPASIAATNN-----EQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAK 118
           +P+T S+  + A   N     +Q   C+ REQDQYMPIANVIRIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 119 ETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRE 178
           ETIQECVSEYISF+TGEANERCQREQRKT+TAED+LWAM KLGFD+Y++PLTVF+NRYRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 179 SESDR---MRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGG--YYDGG 237
            E+DR   +R EP   R    G  +G   P       G    GM D    MGG  YY  G
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNG 208

[Close]

BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-45
Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 1


Query: 10  RDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASI 69
           R GFH YR+     T+     L  N   +  +       Q N                  
Sbjct: 3   RGGFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNK----------------- 62

Query: 70  AATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITG 129
             T+N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITG
Sbjct: 63  --TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 122

Query: 130 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 179
           EANERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 123 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.0e-34
Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 83  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 142
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 143 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRT 182
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]

BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33
Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 1


Query: 82  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 141
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 142 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRT 182
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D   T
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLT 135

[Close]

BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33
Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 1


Query: 82  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 141
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 142 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRT 182
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D   T
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLT 128

[Close]

BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.8e-82
Identity = 161/214 (75.23%), Postives = 177/214 (82.71%), Query Frame = 1


Query: 25  SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84
           S LN +LT N  +S N+  N+N   SN      NS  T  +  +  A NNEQ+QQC+VRE
Sbjct: 28  SGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVRE 87

Query: 85  QDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144
           QDQYMP+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVT
Sbjct: 88  QDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVT 147

Query: 145 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQT 204
           AEDVLWAMGKLGFDDYIEPLTVFLNRYRESES  +RTEP+LRRNVDYG QVGM++PYGQ 
Sbjct: 148 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQA 207

Query: 205 FQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           FQIG VP GMFDAMGGYY GGG+GG S+GN SQL
Sbjct: 208 FQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]

BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 6.5e-63
Identity = 135/214 (63.08%), Postives = 152/214 (71.03%), Query Frame = 1


Query: 25  SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84
           S LN++LT N  +S NN  N+NH  S+      NS  T  +  +  A NNEQ+QQC+VRE
Sbjct: 39  SELNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVRE 98

Query: 85  QDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144
           QDQYMP+AN                             YISFIT EANERCQREQRKTVT
Sbjct: 99  QDQYMPMAN-----------------------------YISFITSEANERCQREQRKTVT 158

Query: 145 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQT 204
           AEDVLWAMGKLGFD+YIEPLTVFLNRYRESES  +RTEP+LRRNVDYGPQVGM++PYGQ 
Sbjct: 159 AEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQA 218

Query: 205 FQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           FQIGHVP GMFDAMGGYY GGG+ G S+GN SQL
Sbjct: 219 FQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]

BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0E3N6S2_GOSBA (Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.0e-60
Identity = 129/179 (72.07%), Postives = 148/179 (82.68%), Query Frame = 1


Query: 62  TGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVS 121
           T +I  + AA +N     C+VREQDQYMPIANVIRIMRRILP+HAKISDDAKETIQECVS
Sbjct: 17  TNTIINNNAANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVS 76

Query: 122 EYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--M 181
           EYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +
Sbjct: 77  EYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSL 136

Query: 182 RTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGGYY-DG--GGNGGSSS 233
           R+EP+L+R +DYGP + M+ PYG  F +GH   G+FD   AMGGY  DG  GG GG SS
Sbjct: 137 RSEPMLKRGIDYGPSM-MMAPYGAGFHVGHQQ-GIFDGATAMGGYMRDGSSGGGGGPSS 193

[Close]

BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.0e-60
Identity = 138/230 (60.00%), Postives = 168/230 (73.04%), Query Frame = 1


Query: 11  DGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIA 70
           DGF+ + +   K +S L+++   + +S+ N     N+  +N+ N               A
Sbjct: 5   DGFNRFYKHA-KSSSGLSIMHGDSSNSNTNTNTIINNNAANNGN---------------A 64

Query: 71  ATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGE 130
           A +N     C+VREQDQYMPIANVIRIMRRILP+HAKISDDAKETIQECVSEYISFITGE
Sbjct: 65  ANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITGE 124

Query: 131 ANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--MRTEPILRRN 190
           ANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +R+EP+L+R 
Sbjct: 125 ANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKRG 184

Query: 191 VDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGGYY-DG--GGNGGSSS 233
           +DYGP + M+ PYG  F +GH   G+FD   AMGGY  DG  GG GG SS
Sbjct: 185 IDYGPSM-MMAPYGAGFHVGHQQ-GIFDGATAMGGYMRDGSSGGGGGPSS 216

[Close]

BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A061FC04_THECC (Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM_030636 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.5e-59
Identity = 140/235 (59.57%), Postives = 161/235 (68.51%), Query Frame = 1


Query: 11  DGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIA 70
           DGF+ + +   K +S L+V+     SS+ NN  N+                         
Sbjct: 5   DGFNRFHKHA-KSSSGLSVI-QPGDSSNTNNGRNT------------------------- 64

Query: 71  ATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGE 130
           A +N     C+VREQDQYMPIANVIRIMRRILP+HAKISDDAKETIQECVSEYISFITGE
Sbjct: 65  ANSNTMPPPCMVREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITGE 124

Query: 131 ANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--MRTEPILRRN 190
           ANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFL RYRESES+R  +R EPIL+R 
Sbjct: 125 ANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLGRYRESESERTSLRGEPILKRG 184

Query: 191 VDYGPQVGMVTPYGQTFQIGHVPIGMFD------AMGGYY-DGGGNGGSSSGNGS 237
           +DYGP + M  PYG  F +GH   G+FD      AMGG+Y DG G  GSSS   S
Sbjct: 185 IDYGPMM-MAPPYGPGFHMGHHHQGIFDAAAAAAAMGGFYRDGSGAAGSSSSQAS 211

[Close]

BLAST of CmoCh06G006830 vs. TAIR10
Match: AT1G21970.1 (AT1G21970.1 Histone superfamily protein)

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-50
Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 1


Query: 59  SPVTGSIPASIAATNN-----EQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAK 118
           +P+T S+  + A   N     +Q   C+ REQDQYMPIANVIRIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 119 ETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRE 178
           ETIQECVSEYISF+TGEANERCQREQRKT+TAED+LWAM KLGFD+Y++PLTVF+NRYRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 179 SESDR---MRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGG--YYDGG 237
            E+DR   +R EP   R    G  +G   P       G    GM D    MGG  YY  G
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNG 208

[Close]

BLAST of CmoCh06G006830 vs. TAIR10
Match: AT5G47670.1 (AT5G47670.1 nuclear factor Y, subunit B6)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46
Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 1


Query: 10  RDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASI 69
           R GFH YR+     T+     L  N   +  +       Q N                  
Sbjct: 3   RGGFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNK----------------- 62

Query: 70  AATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITG 129
             T+N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITG
Sbjct: 63  --TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 122

Query: 130 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 179
           EANERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 123 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh06G006830 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-35
Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 83  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 142
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 143 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRT 182
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]

BLAST of CmoCh06G006830 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-33
Identity = 69/139 (49.64%), Postives = 99/139 (71.22%), Query Frame = 1


Query: 72  TNNEQSQQCI-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGE 131
           +  +QS + + VREQD+++PIAN+ RIM+R LP++ KI+ DAKE +QECVSE+ISF+T E
Sbjct: 17  SGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSE 76

Query: 132 ANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVD 191
           A+++CQRE+RKT+  +D+LWAM  LGF+DY+EPL V+L RYRE E D   T+   +    
Sbjct: 77  ASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD---TKGSAKGGDP 136

Query: 192 YGPQVGMVTPYGQTFQIGH 210
              + G  +  GQ  Q+ H
Sbjct: 137 NAKKDGQSSQNGQFSQLAH 152

[Close]

BLAST of CmoCh06G006830 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 138.7 bits (348), Expect = 4.8e-33
Identity = 84/186 (45.16%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 73  NNEQSQQCIV-REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 132
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 133 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDY 192
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R      L R    
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG----LGR---- 134

Query: 193 GPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGG---------------------NGGS 237
            PQ G      Q   +G          GG+Y GGG                      GGS
Sbjct: 135 -PQTGGEVGEHQRDAVGD--------GGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGS 183

[Close]

BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 3.6e-91
Identity = 172/210 (81.90%), Postives = 185/210 (88.10%), Query Frame = 1


Query: 29  VLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQY 88
           +++T NK++S NNT NSNH  SN      NS  T  +  +  A NNEQ+QQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 89  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 148
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 149 LWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIG 208
           LWAMGKLGFDDYIEPLTVFLNRYRESESDR+RTEPILRRNVDYGPQVGM++PYGQ FQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 209 HVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           HVP GMFDAMGGYY GGG GG S+GNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 6.9e-82
Identity = 161/214 (75.23%), Postives = 177/214 (82.71%), Query Frame = 1


Query: 25  SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84
           S LN +LT N  +S N+  N+N   SN      NS  T  +  +  A NNEQ+QQC+VRE
Sbjct: 28  SGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVRE 87

Query: 85  QDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144
           QDQYMP+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVT
Sbjct: 88  QDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVT 147

Query: 145 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQT 204
           AEDVLWAMGKLGFDDYIEPLTVFLNRYRESES  +RTEP+LRRNVDYG QVGM++PYGQ 
Sbjct: 148 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQA 207

Query: 205 FQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           FQIG VP GMFDAMGGYY GGG+GG S+GN SQL
Sbjct: 208 FQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]

BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 9.4e-63
Identity = 135/214 (63.08%), Postives = 152/214 (71.03%), Query Frame = 1


Query: 25  SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84
           S LN++LT N  +S NN  N+NH  S+      NS  T  +  +  A NNEQ+QQC+VRE
Sbjct: 39  SELNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVRE 98

Query: 85  QDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144
           QDQYMP+AN                             YISFIT EANERCQREQRKTVT
Sbjct: 99  QDQYMPMAN-----------------------------YISFITSEANERCQREQRKTVT 158

Query: 145 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQT 204
           AEDVLWAMGKLGFD+YIEPLTVFLNRYRESES  +RTEP+LRRNVDYGPQVGM++PYGQ 
Sbjct: 159 AEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQA 218

Query: 205 FQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           FQIGHVP GMFDAMGGYY GGG+ G S+GN SQL
Sbjct: 219 FQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]

BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|805305825|gb|AKB11452.1| (leafy cotyledon 1A [Gossypium barbadense])

HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60
Identity = 129/179 (72.07%), Postives = 148/179 (82.68%), Query Frame = 1


Query: 62  TGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVS 121
           T +I  + AA +N     C+VREQDQYMPIANVIRIMRRILP+HAKISDDAKETIQECVS
Sbjct: 17  TNTIINNNAANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVS 76

Query: 122 EYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--M 181
           EYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +
Sbjct: 77  EYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSL 136

Query: 182 RTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGGYY-DG--GGNGGSSS 233
           R+EP+L+R +DYGP + M+ PYG  F +GH   G+FD   AMGGY  DG  GG GG SS
Sbjct: 137 RSEPMLKRGIDYGPSM-MMAPYGAGFHVGHQQ-GIFDGATAMGGYMRDGSSGGGGGPSS 193

[Close]

BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|728844156|gb|KHG23599.1| (Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum])

HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60
Identity = 138/230 (60.00%), Postives = 168/230 (73.04%), Query Frame = 1


Query: 11  DGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIA 70
           DGF+ + +   K +S L+++   + +S+ N     N+  +N+ N               A
Sbjct: 5   DGFNRFYKHA-KSSSGLSIMHGDSSNSNTNTNTIINNNAANNGN---------------A 64

Query: 71  ATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGE 130
           A +N     C+VREQDQYMPIANVIRIMRRILP+HAKISDDAKETIQECVSEYISFITGE
Sbjct: 65  ANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITGE 124

Query: 131 ANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--MRTEPILRRN 190
           ANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +R+EP+L+R 
Sbjct: 125 ANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKRG 184

Query: 191 VDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGGYY-DG--GGNGGSSS 233
           +DYGP + M+ PYG  F +GH   G+FD   AMGGY  DG  GG GG SS
Sbjct: 185 IDYGPSM-MMAPYGAGFHVGHQQ-GIFDGATAMGGYMRDGSSGGGGGPSS 216

The following BLAST results are available for this feature:

BLAST of CmoCh06G006830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB9_ARATH	4.5e-49	59.07	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1...	[more]
NFYB6_ARATH	2.3e-45	58.58	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1...	[more]
NFYB3_ARATH	7.0e-34	64.65	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]
NFYB3_ORYSJ	5.9e-33	62.00	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB_MAIZE	5.9e-33	62.00	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]

BLAST of CmoCh06G006830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U1_CUCSA	4.8e-82	75.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1	[more]
A0A0A0L4W1_CUCSA	6.5e-63	63.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1	[more]
A0A0E3N6S2_GOSBA	3.0e-60	72.07	Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1	[more]
A0A0B0PGM2_GOSAR	4.0e-60	60.00	Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN...	[more]
A0A061FC04_THECC	1.5e-59	59.57	Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM...	[more]

BLAST of CmoCh06G006830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21970.1	2.5e-50	59.07	Histone superfamily protein	[more]
AT5G47670.1	1.3e-46	58.58	nuclear factor Y, subunit B6	[more]
AT4G14540.1	3.9e-35	64.65	nuclear factor Y, subunit B3	[more]
AT2G37060.1	1.7e-33	49.64	nuclear factor Y, subunit B8	[more]
AT5G47640.1	4.8e-33	45.16	nuclear factor Y, subunit B2	[more]

BLAST of CmoCh06G006830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096616\|ref\|XP_008449191.1\|	3.6e-91	81.90	PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]	[more]
gi\|700200905\|gb\|KGN56038.1\|	6.9e-82	75.23	hypothetical protein Csa_3G049440 [Cucumis sativus]	[more]
gi\|700200906\|gb\|KGN56039.1\|	9.4e-63	63.08	hypothetical protein Csa_3G055940 [Cucumis sativus]	[more]
gi\|805305825\|gb\|AKB11452.1\|	4.3e-60	72.07	leafy cotyledon 1A [Gossypium barbadense]	[more]
gi\|728844156\|gb\|KHG23599.1\|	5.7e-60	60.00	Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0033613	activating transcription factor binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G006830.1	CmoCh06G006830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 119..135 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 88..152 score: 1.7
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 76..180 score: 1.3
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 85..178 score: 5.64
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 116..134 score: 1.8E-15coord: 135..153 score: 1.8E-15coord: 154..172 score: 1.8
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 68..221 score: 7.3
None	No IPR available	PANTHER	PTHR11064:SF20	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATED	coord: 68..221 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G006830	Cucumber (Gy14) v1	cgycmoB0030
CmoCh06G006830	Cucurbita maxima (Rimu)	cmacmoB341
CmoCh06G006830	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G006830	Wild cucumber (PI 183967)	cmocpiB823
CmoCh06G006830	Cucumber (Chinese Long) v2	cmocuB815
CmoCh06G006830	Melon (DHL92) v3.5.1	cmomeB756
CmoCh06G006830	Watermelon (Charleston Gray)	cmowcgB730
CmoCh06G006830	Watermelon (Charleston Gray)	cmowcgB733
CmoCh06G006830	Watermelon (97103) v1	cmowmB776
CmoCh06G006830	Cucurbita pepo (Zucchini)	cmocpeB768
CmoCh06G006830	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G006830	Bottle gourd (USVL1VR-Ls)	cmolsiB760
CmoCh06G006830	Cucumber (Gy14) v2	cgybcmoB409
CmoCh06G006830	Melon (DHL92) v3.6.1	cmomedB861
CmoCh06G006830	Melon (DHL92) v3.6.1	cmomedB864
CmoCh06G006830	Silver-seed gourd	carcmoB0013
CmoCh06G006830	Silver-seed gourd	carcmoB0798
CmoCh06G006830	Cucumber (Chinese Long) v3	cmocucB0961
CmoCh06G006830	Watermelon (97103) v2	cmowmbB819
CmoCh06G006830	Watermelon (97103) v2	cmowmbB824
CmoCh06G006830	Wax gourd	cmowgoB0985
CmoCh06G006830	Wax gourd	cmowgoB0993
CmoCh06G006830	Cucurbita moschata (Rifu)	cmocmoB291