CmoCh06G004550 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G004550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCopia protein
LocationCmo_Chr06 : 2170667 .. 2175838 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAATCAGCCAAATCTAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTATCAATCCTGGAGGAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCTAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCACTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGATCAACGCGAAGAAGNNNNNNNNNNTTAAATTTTTATTTTTAATAAAAGTAAAGTGTTAAGTAAAGAATTATAATTCAATTTGAATATATATTTTTAAAAATTATCTTTAAATATTTTAACCCTCTAATTTATAAGAGTTGTTCTAGTTTAAAAAATTTACGGCTCGAACATTTTCACTAAATCTAAAAACTATCTCAATCTGACTCGTTTCAATCCACGAACACTTTTAATTCAAACTTCAATTCCACGTGCTATTACAAAAAACTAGGAATAATTTAATGAAAAAGGGTATTCCTAAAAAGGCTAATTTTTAAATATGAACAAATTCAACTATATTGGGCACTTTTATTCATTCCAGATTTAGAAATATATTTTTTTGAAGAACAAATTATAATATTTTAAATAAACATAATATTAAAAAAAATATATATTCCGTATATATATATATATATTCCCTATCTTTATAGGCTCAATTTTGGGGGCAAATAATTTACTTTGTTGACACGTCACAGTCGTACTCTCCCGAGCTAAGAAGCTGAGAGTGAATAATGGAATGTCTGCCGAAGAAACGTAACACCAACCCCTCACCTTCCCTTGTCTTATAATTCTTCAAATTTACGCTCAAAACCATAATAAAAAGATTGTAATATATATATATAATTTAAATTTTAAAAACATATTAAACATATTTTAGGTTTCGGCACCTAAAAACCGATTAGATACAACTTTTAACGTATAGTTACTTAACATTCAATAATTGATCTTTTCTTGAAAGAGAAAGAACAAAGCATGCTAGAATGACTCATGTTGATCCATAAGAACAGTCTTCATTCTTAAGAAGCGAGAAGTAGTTGTGACCATATCGTAGGAAAATGTCGAGAGTCATCAAGTACTAATCTTGATTCAAATTCTAGGCATGGGTCGTTACAAATAACGTCAGAGTTTGGAACATGTCATATTACGATAATATGGACCATATTGCAGGAGAATGTCAAGGGTCATCAGGTACTTTATTTAGATTTCAAATCTCGATGCGAATTCTGGGCATGGGTCGTTACAAATACATGGTCTATAGTTAGACTCGTATTAAGAGGATATTTTGCCGTGATAATTAGTTAGAATATATCTTAGATATTTAGGAAGCTGTTAGTATAGATTTGATTAACCGTATATTTTATTTATTTACCAGATTTAATTAGATATATATTTTTCTATTTTTAGGTATTAGTTGATAGTTTGTATCCTATTTAAACGTGTAAACCTGAATGAAGATCATACTTTCGATCCCAATTCTATTTCTATTTCTCATTCTTAACATGGTATCAGAGCACCGATCTTGGTGTTCTTAAATATCAAAATTTCCTTTATGGCGGAATCAGCCAAATCTAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTATCAATCCTGGAGGAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCTAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCACTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCTCATGGGGCTCAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTTCGAACCTACTGAGAAAATCTCGATTGCATCAGCCGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAATTGTGTGAACACTGCAATAAAAGTGGTCATACAATTAATGAGTGTCGAATTCTTAAGTTTCACTGTAAGTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCNNNNNNNNNNGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATGTTTCTTCTGAGCAATTACGACAGATAGCACAAGTCTTATCTGCAATCAATTATCACCCTTCTGGTAATTCTGACAATCACATCAATGTTGCAGGTTTGTTTCCCATATCTACATTATCTATTAACTCTGCGAGTTCTAATTCATGGATTCTCGATAGTGGAGCTACGGATCATATAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTAAATTAAACAACGTTTTATGTGTGCCTTCATTCAATTTAAACCTAATGTCGATCAGCAAACTTACCAATAACTTGAAATGTTATGTCACCTTCTATCCTGATTCTTGTGTTATGCAGGACTTGACTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTCCAATCAAGTCTTCAGCTCATCAAGTATCTCAGTCATCTGATTTGTGGCATTTACGCCTAGGTCATCCTTCATTTTCTCGTTTTAAATTTCTAGCTGATCAATTGCATCTTAATAATGCGAGTTATTCTCATAATTGCAGTATCTGCCCGTTAGCAAAACAAACTAGGTTGTCTTTCCCAAGAAGTTCAATAACAACCCATTCTGCTTTTGATCTGATACATTGTGATGTTTGGGGACCATATAAAATTCCTACCCATTCTGGTTTGCGTTTTTTTCTCACTATTGTTGATGATTTTACTCGATGTACTTGGGTTTTTTTAATGCAACATAAGTCAGAAGTACATCATTTGTTGATGAACTTTGTTAAATTCGTTCAAACTCAATTTCATACTACTATCAAGATAGTTCGATCAGACAATGGGACTGAGTTCCTATCTTTGCAACCATTCTTTACTTCTTGTGGTATTGAATTTCAGCGCACTTGTGTCTATACTCCACAACAAAATGGAGTCGTAGAACGCAAGCATCGCCATATCCTAAATGTAGCTAGGTCTCTTCTTTTTCAGTCACAAGTTCCACTTAATTTTTGAGGAGAGTGCATTTTAACGGCTGTTTATCTTATAAATAGAACGCCATCACCATTATTATCTAACAAGACACAGGTCTTACAGGAGCACGTCCAGACAAATTTCCTATGGAGCAAAATCTGAAACTTTCTTTAACCGAAGGAGAGAAGTTGAATGATCCAAGTAAATACAGACGGTTGATTGGCAGATTAATATATTTGACCGTCACTAGGCCTGACATAGCTTATTCAGTTCGTATGCTTAGCCAATTTATGCATGAACCAAGAAAACCACATTGGGAGGCAGCTCTTCGAGTTCTGAGGTACATTAAAGGCACTCCTGGTCAAGGACTTCTACTGCCATCTGAAAACAATTTAAGATTACAGGCATATTGCGATTCTGACTGGGGTGGTTGTCGAACTTCCAGACGATCTATTTCTGGGTTCTGCATTTTCCTCGGAAATTCAATTATTTCTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTTTTACTAAATCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGGTGTGATCGACATACACTCTCCAACTTGAGGGGGAGTATTAAGAGGATATTTTGCCGTGATAATTAGTTAGAATATATCTTAGATATTTAGGAAGCTGTTAGTATAGATTTGNNNNNNNNNNACAGCACGTGTGTCACATACTGGCAATATTTCCCTTAGCCCTAACCTTAAATTAAACAACGTTTTATGTGTGCCTTCATTCAATTTAAACCTAATGTCGATCAGCAAACTTACCAATAACTTGAAATGTTATGTCACCTTCTATCCTGATTCTTGTGTTATGCAGGACTTGACTACGGGGAAGATGATTGGCTCGGGTAA

mRNA sequence

ATGGCGGAATCAGCCAAATCTAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTATCAATCCTGGAGGAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCTAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCACTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTCCAAATCTAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTATCAATCCTGGAGGAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCTAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCACTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCTCATGGGGCTCAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGACTTGACTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTCCAATCAAGTCTTCAGCTCATCAAGTATCTCAGTCATCTGATTTGTGGCATTTACGCCTAGGTCTTACAGGAGCACGTCCAGACAAATTTCCTATGGAGCAAAATCTGAAACTTTCTTTAACCGAAGGAGAGAAGTTGAATGATCCAAGTAAATACAGACGGTTGATTGGCAGATTAATATATTTGACCGTCACTAGGCCTGACATAGCTTATTCAGTTCGTATGCTTAGCCAATTTATGCATGAACCAAGAAAACCACATTGGGAGGCAGCTCTTCGAGTTCTGAGGTACATTAAAGGCACTCCTGGTCAAGGACTTCTACTGCCATCTGAAAACAATTTAAGATTACAGGCATATTGCGATTCTGACTGGGGTGGTTGTCGAACTTCCAGACGATCTATTTCTGGGTTCTGCATTTTCCTCGGAAATTCAATTATTTCTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGACTTGACTACGGGGAAGATGATTGGCTCGGGTAA

Coding sequence (CDS)

ATGGCGGAATCAGCCAAATCTAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTATCAATCCTGGAGGAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCTAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCACTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTCCAAATCTAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTATCAATCCTGGAGGAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCTAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCACTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCTCATGGGGCTCAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGACTTGACTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTCCAATCAAGTCTTCAGCTCATCAAGTATCTCAGTCATCTGATTTGTGGCATTTACGCCTAGGTCTTACAGGAGCACGTCCAGACAAATTTCCTATGGAGCAAAATCTGAAACTTTCTTTAACCGAAGGAGAGAAGTTGAATGATCCAAGTAAATACAGACGGTTGATTGGCAGATTAATATATTTGACCGTCACTAGGCCTGACATAGCTTATTCAGTTCGTATGCTTAGCCAATTTATGCATGAACCAAGAAAACCACATTGGGAGGCAGCTCTTCGAGTTCTGAGGTACATTAAAGGCACTCCTGGTCAAGGACTTCTACTGCCATCTGAAAACAATTTAAGATTACAGGCATATTGCGATTCTGACTGGGGTGGTTGTCGAACTTCCAGACGATCTATTTCTGGGTTCTGCATTTTCCTCGGAAATTCAATTATTTCTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGACTTGACTACGGGGAAGATGATTGGCTCGGGTAA
BLAST of CmoCh06G004550 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-38
Identity = 78/157 (49.68%), Postives = 105/157 (66.88%), Query Frame = 1

Query: 434 GLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFM 493
           G+   +P   P+   L  S++   K  DPS +R ++G L YLT+TRPDI+Y+V ++ Q M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTA-KYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 494 HEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIF 553
           HEP    ++   RVLRY+KGT   GL +   + L +QA+CDSDW GC ++RRS +GFC F
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTF 189

Query: 554 LGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTW 591
           LG +IISW +K+Q  VSRSS E EYRA+A T  ELTW
Sbjct: 190 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

BLAST of CmoCh06G004550 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.8e-29
Identity = 75/203 (36.95%), Postives = 117/203 (57.64%), Query Frame = 1

Query: 432  RLGLTGARPDKFPMEQNLKLSL----TEGEKLNDPSK--YRRLIGRLIYLTV-TRPDIAY 491
            R  +  A+P   P+  +LKLS     T  E+  + +K  Y   +G L+Y  V TRPDIA+
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAH 1131

Query: 492  SVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSR 551
            +V ++S+F+  P K HWEA   +LRY++GT G  L     + + L+ Y D+D  G   +R
Sbjct: 1132 AVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNR 1191

Query: 552  RSISGFCIFLGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSE 611
            +S +G+        ISW+SK Q  V+ S+ EAEY A   T  E+ WL+  LQ+L +   E
Sbjct: 1192 KSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKE 1251

Query: 612  PALLYCDNQAALHIAANPVFHER 628
              ++YCD+Q+A+ ++ N ++H R
Sbjct: 1252 -YVVYCDSQSAIDLSKNSMYHAR 1272

BLAST of CmoCh06G004550 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 3.8e-26
Identity = 71/190 (37.37%), Postives = 107/190 (56.32%), Query Frame = 1

Query: 444  PMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTV-TRPDIAYSVRMLSQFMHEPRKPHWE 503
            P + N +L L   E  N P   R LIG L+Y+ + TRPD+  +V +LS++  +     W+
Sbjct: 1163 PSKINYEL-LNSDEDCNTPC--RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQ 1222

Query: 504  AALRVLRYIKGTPGQGLL----LPSENNLRLQAYCDSDWGGCRTSRRSISGFCIFLGN-S 563
               RVLRY+KGT    L+    L  EN  ++  Y DSDW G    R+S +G+   + + +
Sbjct: 1223 NLKRVLRYLKGTIDMKLIFKKNLAFEN--KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFN 1282

Query: 564  IISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALH 623
            +I W +K+Q +V+ SS EAEY A+     E  WL+++L  +N+ L  P  +Y DNQ  + 
Sbjct: 1283 LICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCIS 1342

Query: 624  IAANPVFHER 628
            IA NP  H+R
Sbjct: 1343 IANNPSCHKR 1347

BLAST of CmoCh06G004550 vs. Swiss-Prot
Match: M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-17
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1

Query: 473 IYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAY 532
           +YLT+TRPD+ ++V  LSQF    R    +A  +VL Y+KGT GQGL   + ++L+L+A+
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 533 CDSDWGGCRTSRRSISGFC 552
            DSDW  C  +RRS++GFC
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

BLAST of CmoCh06G004550 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-16
Identity = 70/232 (30.17%), Postives = 114/232 (49.14%), Query Frame = 1

Query: 365 NILMMSPLPNVRQAYSLLVQEEMQRQDLTTGKMIGSGKQFGGL-YHISSS-----PIKSS 424
           ++L+ +P P +       V++E+ +  L + K +G   +F GL  H SS+      ++  
Sbjct: 90  DLLVAAPSPKIYDR----VKQELTK--LYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDY 149

Query: 425 AHQVSQSSDLWHLRLGLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVT 484
             + +  S++   +L  T       P+  +  L  T    L D + Y+ ++G+L++   T
Sbjct: 150 IAKAASESEINTFKLTQT-------PLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANT 209

Query: 485 -RPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDW 544
            RPDI+Y V +LS+F+ EPR  H E+A RVLRY+  T    L   S + L L  YCD+  
Sbjct: 210 GRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASH 269

Query: 545 GGCRTSRRSISGFCIFLGNSIISWKSKKQTNV-SRSSAEAEYRAMANTCLEL 589
           G       S  G+   L  + ++W SKK   V    S EAEY   + T +E+
Sbjct: 270 GAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVMEI 308

BLAST of CmoCh06G004550 vs. TrEMBL
Match: A5BNR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.4e-91
Identity = 162/201 (80.60%), Postives = 182/201 (90.55%), Query Frame = 1

Query: 434  GLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFM 493
            GLTG +P+KFPMEQNLKL+  +GE L+DPS+YRRL+GRLIYLTVTRPDI YSVR LSQFM
Sbjct: 1476 GLTGVKPEKFPMEQNLKLTNEDGELLHDPSRYRRLVGRLIYLTVTRPDIVYSVRTLSQFM 1535

Query: 494  HEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIF 553
            + PRKPHWEAALRVLRYIKG+PGQGL LPSENNL L A+CDSDWGGCR SRRS+SG+C+F
Sbjct: 1536 NTPRKPHWEAALRVLRYIKGSPGQGLFLPSENNLTLSAFCDSDWGGCRMSRRSVSGYCVF 1595

Query: 554  LGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQ 613
            LG+S+ISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYIL+DL V L +PA L+CDNQ
Sbjct: 1596 LGSSLISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILKDLKVELDKPAPLFCDNQ 1655

Query: 614  AALHIAANPVFHERLDYGEDD 635
            AAL+IAANPVFHER  + E D
Sbjct: 1656 AALYIAANPVFHERTKHIEID 1676

BLAST of CmoCh06G004550 vs. TrEMBL
Match: A5BLV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.9e-75
Identity = 143/237 (60.34%), Postives = 175/237 (73.84%), Query Frame = 1

Query: 402  KQFGGLYHISSSPIKSSAHQVSQSSDLWHLRL----GLTGARPDKFPMEQNLKLSLTEGE 461
            K  G L +     +  S   +S S   + L +    G  GA+P  FPMEQN KLS   GE
Sbjct: 991  KDLGDLKYFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNTKLS-DSGE 1050

Query: 462  KLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQ 521
             L DPS+YRRL+GRLIYLT+TRPDI YSV +LS+FMH PR+PH EAALRVLRY+K +PGQ
Sbjct: 1051 LLKDPSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQ 1110

Query: 522  GLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIFLGNSIISWKSKKQTNVSRSSAEAE 581
            GL  PS+N+L L+A+ DSDW GC  SRRS +G+C+FLG+S+ISW++K+Q  VS SSAEAE
Sbjct: 1111 GLFFPSQNDLSLRAFSDSDWAGCPISRRSTTGYCVFLGSSLISWRTKRQKTVSLSSAEAE 1170

Query: 582  YRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERLDYGEDD 635
            YRAMA TC EL+WLR +L+DL +   +PALLYCDN AALHIAANPVFHER  + E D
Sbjct: 1171 YRAMAGTCCELSWLRSLLKDLRILHPKPALLYCDNTAALHIAANPVFHERTRHIEMD 1226

BLAST of CmoCh06G004550 vs. TrEMBL
Match: A5AIJ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031733 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 140/237 (59.07%), Postives = 173/237 (73.00%), Query Frame = 1

Query: 402  KQFGGLYHISSSPIKSSAHQVSQSSDLWHLRL----GLTGARPDKFPMEQNLKLSLTEGE 461
            K  G L +     +  S   +S S   + L +    G  GA+P  FPMEQN+KLS    E
Sbjct: 1034 KDLGDLKYFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNIKLS-DSSE 1093

Query: 462  KLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQ 521
             L DPS+YRRL+GRLIYLT+TRPDI YSV +LS+FMH PR+PH EAALRVLRY+K +PGQ
Sbjct: 1094 LLKDPSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQ 1153

Query: 522  GLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIFLGNSIISWKSKKQTNVSRSSAEAE 581
            GL  PS+N+L L+A+ DSDW GC  SRRS +G+C+FLG+S+ISW++K+Q  VS SSAEAE
Sbjct: 1154 GLFFPSQNDLSLRAFSDSDWAGCPISRRSTTGYCVFLGSSLISWRTKRQKTVSLSSAEAE 1213

Query: 582  YRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERLDYGEDD 635
            YRAM  TC EL+WLR +L+DL +   +PALLYCDN  ALHIAANPVFHER  + E D
Sbjct: 1214 YRAMTGTCCELSWLRSLLKDLRILHPKPALLYCDNTTALHIAANPVFHERTRHIEMD 1269

BLAST of CmoCh06G004550 vs. TrEMBL
Match: A0A0B2QQ23_GLYSO (Copia protein (Fragment) OS=Glycine soja GN=glysoja_029824 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.4e-73
Identity = 132/168 (78.57%), Postives = 147/168 (87.50%), Query Frame = 1

Query: 467 RLIGRLIYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENN 526
           RL+GRLIYLTVTRPDI YSV+ LSQFMHEPRKPHW+AALRVLRYIKGTPGQGLL  S N+
Sbjct: 1   RLVGRLIYLTVTRPDIVYSVQTLSQFMHEPRKPHWDAALRVLRYIKGTPGQGLLFSSAND 60

Query: 527 LRLQAYCDSDWGGCRTSRRSISGFCIFLGNSIISWKSKKQTNVSRSSAEAEYRAMANTCL 586
           L L+A+CDSDWGGC  +R+S++GFC FLGNS+ISWKSKKQ  VSRSSAE+EYRAMANTCL
Sbjct: 61  LTLKAFCDSDWGGCHATRKSVTGFCFFLGNSLISWKSKKQVVVSRSSAESEYRAMANTCL 120

Query: 587 ELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERLDYGEDD 635
           ELTWLR+ILQDL VP   P  L+CDNQAALHIAANPVFHER  + E D
Sbjct: 121 ELTWLRFILQDLKVPQDAPTPLFCDNQAALHIAANPVFHERTKHIEID 168

BLAST of CmoCh06G004550 vs. TrEMBL
Match: A5ART6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028058 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.4e-72
Identity = 139/237 (58.65%), Postives = 171/237 (72.15%), Query Frame = 1

Query: 402  KQFGGLYHISSSPIKSSAHQVSQSSDLWHLRL----GLTGARPDKFPMEQNLKLSLTEGE 461
            K  G L +     +  S   +S S   + L +    G  GA+P  FPMEQN KLS   GE
Sbjct: 837  KDLGDLKYFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNTKLS-DSGE 896

Query: 462  KLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQ 521
             L  PS+YRRL+GRLIYLT+TRPDI YSV +LS+FMH PR+PH EAALRVLRY+K +PGQ
Sbjct: 897  LLKGPSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQ 956

Query: 522  GLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIFLGNSIISWKSKKQTNVSRSSAEAE 581
            GL  PS+N+L L+A+ D DW GC  SRRS +G+C+FLG+S+ISW++K+Q  VS SS EAE
Sbjct: 957  GLFFPSQNDLSLRAFSDXDWAGCPISRRSXTGYCVFLGSSLISWRTKRQKTVSLSSXEAE 1016

Query: 582  YRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERLDYGEDD 635
            YRAMA TC EL+WLR +L+DL +   +PALLYCDN AALHIA NPVFHER  + E D
Sbjct: 1017 YRAMAGTCCELSWLRSLLKDLRILHPKPALLYCDNTAALHIAVNPVFHERTRHIEMD 1072

BLAST of CmoCh06G004550 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-55
Identity = 101/201 (50.25%), Postives = 137/201 (68.16%), Query Frame = 1

Query: 434 GLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFM 493
           GL G +P   PM+ ++  S   G    D   YRRLIGRL+YL +TR DI+++V  LSQF 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 494 HEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIF 553
             PR  H +A +++L YIKGT GQGL   S+  ++LQ + D+ +  C+ +RRS +G+C+F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 554 LGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQ 613
           LG S+ISWKSKKQ  VS+SSAEAEYRA++    E+ WL    ++L +PLS+P LL+CDN 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 614 AALHIAANPVFHERLDYGEDD 635
           AA+HIA N VFHER  + E D
Sbjct: 527 AAIHIATNAVFHERTKHIESD 547

BLAST of CmoCh06G004550 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 162.5 bits (410), Expect = 8.3e-40
Identity = 78/157 (49.68%), Postives = 105/157 (66.88%), Query Frame = 1

Query: 434 GLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFM 493
           G+   +P   P+   L  S++   K  DPS +R ++G L YLT+TRPDI+Y+V ++ Q M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTA-KYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 494 HEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIF 553
           HEP    ++   RVLRY+KGT   GL +   + L +QA+CDSDW GC ++RRS +GFC F
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTF 189

Query: 554 LGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTW 591
           LG +IISW +K+Q  VSRSS E EYRA+A T  ELTW
Sbjct: 190 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

BLAST of CmoCh06G004550 vs. TAIR10
Match: AT1G21280.1 (AT1G21280.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 113.2 bits (282), Expect = 5.8e-25
Identity = 72/232 (31.03%), Postives = 114/232 (49.14%), Query Frame = 1

Query: 168 TSKSSFKISDVDLTHPYY----IHHSDQPGYSLVPIKLNGANYQSWRKSVMHALIAKKKI 227
           T KS    SD D   PYY    IHH     +S+  +  +  NY +W+      L   KK 
Sbjct: 4   TIKSVSPTSDPD--SPYYLPPDIHHPSD--FSIQKLSKDEDNYVAWKIRFRSFLRVTKKF 63

Query: 228 GFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHD 287
           GFIDGT+ +P  D  S  ++ W QCN+M++ WL +S+   + + +++A+TAH++W DL  
Sbjct: 64  GFIDGTLPKP--DPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRR 123

Query: 288 QFSQKNALAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRT-------PFTCXXX 347
            F     L I+Q++  +AT+ QG  ++  YF KL  +W EL  Y            C   
Sbjct: 124 VFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECT 183

Query: 348 XXXXXXXXXXXXXXLLMG--LNQSYKTVRSNILMMSPLPNVRQAYSLLVQEE 387
                          LMG  LNQ ++ V + I+   P P++ +A++++   E
Sbjct: 184 KRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229

BLAST of CmoCh06G004550 vs. TAIR10
Match: ATMG00240.1 (ATMG00240.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-18
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1

Query: 473 IYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAY 532
           +YLT+TRPD+ ++V  LSQF    R    +A  +VL Y+KGT GQGL   + ++L+L+A+
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 533 CDSDWGGCRTSRRSISGFC 552
            DSDW  C  +RRS++GFC
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

BLAST of CmoCh06G004550 vs. NCBI nr
Match: gi|147783627|emb|CAN68148.1| (hypothetical protein VITISV_035665 [Vitis vinifera])

HSP 1 Score: 345.5 bits (885), Expect = 2.0e-91
Identity = 162/201 (80.60%), Postives = 182/201 (90.55%), Query Frame = 1

Query: 434  GLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFM 493
            GLTG +P+KFPMEQNLKL+  +GE L+DPS+YRRL+GRLIYLTVTRPDI YSVR LSQFM
Sbjct: 1476 GLTGVKPEKFPMEQNLKLTNEDGELLHDPSRYRRLVGRLIYLTVTRPDIVYSVRTLSQFM 1535

Query: 494  HEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIF 553
            + PRKPHWEAALRVLRYIKG+PGQGL LPSENNL L A+CDSDWGGCR SRRS+SG+C+F
Sbjct: 1536 NTPRKPHWEAALRVLRYIKGSPGQGLFLPSENNLTLSAFCDSDWGGCRMSRRSVSGYCVF 1595

Query: 554  LGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQ 613
            LG+S+ISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYIL+DL V L +PA L+CDNQ
Sbjct: 1596 LGSSLISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILKDLKVELDKPAPLFCDNQ 1655

Query: 614  AALHIAANPVFHERLDYGEDD 635
            AAL+IAANPVFHER  + E D
Sbjct: 1656 AALYIAANPVFHERTKHIEID 1676

BLAST of CmoCh06G004550 vs. NCBI nr
Match: gi|971549811|ref|XP_015164069.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Solanum tuberosum])

HSP 1 Score: 329.3 bits (843), Expect = 1.5e-86
Identity = 153/194 (78.87%), Postives = 172/194 (88.66%), Query Frame = 1

Query: 434 GLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFM 493
           G+ GARP+ FPMEQNLKL+ T+G  LNDP+KYRRL+GRLIYLTVTRPDI YSVR LSQFM
Sbjct: 15  GILGARPELFPMEQNLKLTSTDGVVLNDPTKYRRLVGRLIYLTVTRPDIVYSVRTLSQFM 74

Query: 494 HEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIF 553
            EPRKPHW+AA+R+L+YIKGTPGQGLL PS NNL L+A+CDSDWG CR +RRS++G+CIF
Sbjct: 75  QEPRKPHWDAAVRILKYIKGTPGQGLLFPSTNNLILKAFCDSDWGSCRATRRSVTGYCIF 134

Query: 554 LGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQ 613
           LGNS+ISWKSKKQ  VSRSSAEAEYRAMANTCLELTWL YILQDL +    PA L+CDNQ
Sbjct: 135 LGNSLISWKSKKQLVVSRSSAEAEYRAMANTCLELTWLSYILQDLRISNVTPAKLFCDNQ 194

Query: 614 AALHIAANPVFHER 628
           AALHIAANPVFHER
Sbjct: 195 AALHIAANPVFHER 208

BLAST of CmoCh06G004550 vs. NCBI nr
Match: gi|731433688|ref|XP_010644745.1| (PREDICTED: uncharacterized protein LOC104877672 [Vitis vinifera])

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-84
Identity = 156/213 (73.24%), Postives = 173/213 (81.22%), Query Frame = 1

Query: 178 VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWRKSVMHALIAKKKIGFIDGTIEEPSQDA 237
           +D +HP YIHHSDQPG+ LVPIKLNG NYQSW KSV+HAL AKKKIGF+DGTIEEPSQ+ 
Sbjct: 15  IDPSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKSVIHALTAKKKIGFVDGTIEEPSQED 74

Query: 238 NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQ 297
               FE WNQCNSMI+SWLTH VE+DIA+GIIHAKTA +VWVDL DQFSQKNA A+FQIQ
Sbjct: 75  EPFMFEQWNQCNSMILSWLTHVVESDIAEGIIHAKTAREVWVDLRDQFSQKNAPAVFQIQ 134

Query: 298 NSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCXXXXXXXXXXXXXXXXXLLMGLNQ 357
            SIATMSQGTM ++ YFTK+KALWDELE YR+P TC                  LMGLN+
Sbjct: 135 KSIATMSQGTMTVAAYFTKIKALWDELETYRSPLTCNQRQAHLEQREEDRLMQFLMGLNE 194

Query: 358 SYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQ 391
           SYK VRSNILMMSPLPNVRQAYSL+VQEEMQRQ
Sbjct: 195 SYKAVRSNILMMSPLPNVRQAYSLIVQEEMQRQ 227

BLAST of CmoCh06G004550 vs. NCBI nr
Match: gi|731439152|ref|XP_010646703.1| (PREDICTED: uncharacterized protein LOC104878279 [Vitis vinifera])

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-83
Identity = 152/213 (71.36%), Postives = 174/213 (81.69%), Query Frame = 1

Query: 178 VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWRKSVMHALIAKKKIGFIDGTIEEPSQDA 237
           +D +HP YIHHSDQPG+ LVPIKLNG NYQSW K+V+HAL AKKKIGF++GT+EEPSQ+ 
Sbjct: 15  IDPSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKAVIHALTAKKKIGFVNGTVEEPSQED 74

Query: 238 NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQ 297
               FE WNQCNSMI+SWLTH+VE+DIA+GIIHAKTA +VWVDL DQFSQKNA A+FQIQ
Sbjct: 75  EPFMFEQWNQCNSMILSWLTHAVESDIAEGIIHAKTAREVWVDLRDQFSQKNAPAVFQIQ 134

Query: 298 NSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCXXXXXXXXXXXXXXXXXLLMGLNQ 357
            SIATMSQGTM ++ YFTK+KALWDELE YR+P TC                  LMGLN+
Sbjct: 135 KSIATMSQGTMTVAAYFTKIKALWDELETYRSPLTCNQRQAHLEQREEDRLMQFLMGLNE 194

Query: 358 SYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQ 391
           SYK VRSNILMMSPLPNVRQAYSL++QEEMQRQ
Sbjct: 195 SYKAVRSNILMMSPLPNVRQAYSLIIQEEMQRQ 227

BLAST of CmoCh06G004550 vs. NCBI nr
Match: gi|747105150|ref|XP_011100841.1| (PREDICTED: uncharacterized protein LOC105178952 [Sesamum indicum])

HSP 1 Score: 313.9 bits (803), Expect = 6.3e-82
Identity = 166/451 (36.81%), Postives = 256/451 (56.76%), Query Frame = 1

Query: 186 IHHSDQPGYSLVPIKLNGANYQSWRKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELW 245
           +H SD PG SLV   L+G+N+ SW +S+   L AK K+ FI    E P +  N+ EFE W
Sbjct: 10  LHPSDNPGLSLVTTILDGSNFLSWSRSIRLVLTAKTKMSFISKDAEIPEK--NTKEFEQW 69

Query: 246 NQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQNSIATMSQ 305
            + +SM+ SW+ +S+  DI +  ++ KT+ ++W +L +++ Q N    ++++  +A++SQ
Sbjct: 70  IKVDSMVTSWILNSITRDIVESFMYTKTSKELWTELENRYGQSNGPMEYRLKRELASLSQ 129

Query: 306 GTMALSTYFTKLKALWDELEAYRTPFTCXXXXXXXXXXXXXXXXXLLMGLNQSYKTVRSN 365
                    +      D+L  +                        LMGL  S   VRS 
Sbjct: 130 ARENADIKSS------DQLMQF------------------------LMGLKDSCDHVRSQ 189

Query: 366 ILMMSPLPNVRQAYSLLVQEEMQRQDLTTGKMIGSGKQFGGLYHISSSPIKSSAHQVSQS 425
           ILMM P PNV +A+S++++ E Q++                   +++ P   +   +SQ+
Sbjct: 190 ILMMEPYPNVSKAFSMVLRIEKQKE-------------------VNTEPQSKTGIVISQT 249

Query: 426 SDLWHL--RLGLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIA 485
             +  +   +GL+  +    P+   +KLS ++ E+L +P  +RRL+GRL+YL  TRPDI 
Sbjct: 250 KYIKDIIDDVGLSEVKATSTPLPMGIKLSSSQEEQLENPESFRRLLGRLLYLGFTRPDIC 309

Query: 486 YSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTS 545
           +  + LSQ+M  P K HW AAL ++RY+K T  +GL L ++++  L+A+CD DW  C+ S
Sbjct: 310 HGTQQLSQYMQFPCKAHWNAALHLVRYLKTTMNRGLQLNTDDSFELKAFCDVDWASCKDS 369

Query: 546 RRSISGFCIFLGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLS 605
           R+S++ +C+FLG S ISWK+KKQT VSRSS E EYR+M  T  E  W+  +LQD  +   
Sbjct: 370 RKSLTRYCVFLGGSFISWKTKKQTTVSRSSGEVEYRSMGTTTCEPIWIFNLLQDFKIIPP 409

Query: 606 EPALLYCDNQAALHIAANPVFHERLDYGEDD 635
            P   YCDNQAAL+I ANP+FHER  + E D
Sbjct: 430 TPIKFYCDNQAALYITANPIFHERTKHIEID 409

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M810_ARATH1.5e-3849.68Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
POLX_TOBAC4.8e-2936.95Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME3.8e-2637.37Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M240_ARATH5.5e-1748.10Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg0... [more]
YCH4_YEAST2.1e-1630.17Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A5BNR5_VITVI1.4e-9180.60Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1[more]
A5BLV0_VITVI8.9e-7560.34Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1[more]
A5AIJ8_VITVI1.7e-7359.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031733 PE=4 SV=1[more]
A0A0B2QQ23_GLYSO6.4e-7378.57Copia protein (Fragment) OS=Glycine soja GN=glysoja_029824 PE=4 SV=1[more]
A5ART6_VITVI2.4e-7258.65Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028058 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.11.4e-5550.25 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.18.3e-4049.68ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
AT1G21280.15.8e-2531.03 Retrotransposon gag protein (InterPro:IPR005162)[more]
ATMG00240.13.1e-1848.10ATMG00240.1 Gag-Pol-related retrotransposon family protein[more]
Match NameE-valueIdentityDescription
gi|147783627|emb|CAN68148.1|2.0e-9180.60hypothetical protein VITISV_035665 [Vitis vinifera][more]
gi|971549811|ref|XP_015164069.1|1.5e-8678.87PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Solanum tuberos... [more]
gi|731433688|ref|XP_010644745.1|1.8e-8473.24PREDICTED: uncharacterized protein LOC104877672 [Vitis vinifera][more]
gi|731439152|ref|XP_010646703.1|1.2e-8371.36PREDICTED: uncharacterized protein LOC104878279 [Vitis vinifera][more]
gi|747105150|ref|XP_011100841.1|6.3e-8236.81PREDICTED: uncharacterized protein LOC105178952 [Sesamum indicum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G004550.1CmoCh06G004550.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 90..162
score: 3.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 434..607
score: 4.4
NoneNo IPR availablePANTHERPTHR11439:SF191SUBFAMILY NOT NAMEDcoord: 434..607
score: 4.4
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 245..391
score: 9.
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 456..628
score: 2.22

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G004550Watermelon (97103) v2cmowmbB811
CmoCh06G004550Watermelon (97103) v2cmowmbB818
CmoCh06G004550Watermelon (97103) v2cmowmbB832
CmoCh06G004550Wax gourdcmowgoB0983
CmoCh06G004550Wax gourdcmowgoB1031
CmoCh06G004550Cucurbita moschata (Rifu)cmocmoB222
CmoCh06G004550Cucurbita moschata (Rifu)cmocmoB454
CmoCh06G004550Cucurbita moschata (Rifu)cmocmoB483
CmoCh06G004550Cucumber (Gy14) v1cgycmoB0149
CmoCh06G004550Cucumber (Gy14) v1cgycmoB1044
CmoCh06G004550Cucurbita maxima (Rimu)cmacmoB268
CmoCh06G004550Cucurbita maxima (Rimu)cmacmoB665
CmoCh06G004550Cucurbita maxima (Rimu)cmacmoB874
CmoCh06G004550Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G004550Wild cucumber (PI 183967)cmocpiB810
CmoCh06G004550Wild cucumber (PI 183967)cmocpiB815
CmoCh06G004550Wild cucumber (PI 183967)cmocpiB838
CmoCh06G004550Cucumber (Chinese Long) v2cmocuB807
CmoCh06G004550Cucumber (Chinese Long) v2cmocuB828
CmoCh06G004550Melon (DHL92) v3.5.1cmomeB747
CmoCh06G004550Melon (DHL92) v3.5.1cmomeB763
CmoCh06G004550Watermelon (Charleston Gray)cmowcgB729
CmoCh06G004550Watermelon (Charleston Gray)cmowcgB742
CmoCh06G004550Watermelon (97103) v1cmowmB782
CmoCh06G004550Watermelon (97103) v1cmowmB797
CmoCh06G004550Cucurbita pepo (Zucchini)cmocpeB761
CmoCh06G004550Cucurbita pepo (Zucchini)cmocpeB782
CmoCh06G004550Cucurbita pepo (Zucchini)cmocpeB783
CmoCh06G004550Cucurbita pepo (Zucchini)cmocpeB797
CmoCh06G004550Bottle gourd (USVL1VR-Ls)cmolsiB740
CmoCh06G004550Bottle gourd (USVL1VR-Ls)cmolsiB747
CmoCh06G004550Cucumber (Gy14) v2cgybcmoB130
CmoCh06G004550Cucumber (Gy14) v2cgybcmoB402
CmoCh06G004550Cucumber (Gy14) v2cgybcmoB833
CmoCh06G004550Melon (DHL92) v3.6.1cmomedB849
CmoCh06G004550Melon (DHL92) v3.6.1cmomedB867
CmoCh06G004550Silver-seed gourdcarcmoB0208
CmoCh06G004550Silver-seed gourdcarcmoB0337
CmoCh06G004550Silver-seed gourdcarcmoB0351
CmoCh06G004550Silver-seed gourdcarcmoB1098
CmoCh06G004550Silver-seed gourdcarcmoB1099
CmoCh06G004550Cucumber (Chinese Long) v3cmocucB0951
CmoCh06G004550Cucumber (Chinese Long) v3cmocucB0954
CmoCh06G004550Cucumber (Chinese Long) v3cmocucB0979