CmoCh06G003950 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G003950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMYB transcription factor
LocationCmo_Chr06 : 1928378 .. 1929379 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTCATTCAGCCCTTCAAACTGAGATACAGCGTAGAGGACCTTGGCTCGAACAGGAAGACAGGCAGCTCACCATGTTTGTAACTCGCATGGGAGAGAGAAAGTGGGACTCGATCGCCAAAGCTTCAGGTATGACTGTTAACTTTTTTCTATCGTAATAGTATGATATTGTCGATTTTGTAAAGTTCTATGTCAAGACTTGTTTATATGTTCGTATCTGAACATTGCAGGGCTTGAGAGAAGTGGGAAGAGCTGTAGATTCAGATGGCTTAACTATCTCCGCCCTAGTCTTAAACGTGATCGCATAAACAGTGAGGAAGAAGAAATCATTCTGAAACTTCATAAGAAATGGGGTAACAAGTATGAACTAAAATAACATCTGGGTGCTAGAAATTTTGCAACTTTATTGCTCTATGATCATCATTATTCAAATATATCTTGTTTTAGATGGTCGAGAATCGCACGATGGCTTCCAGGAAGAACTGATAACGAGATCAAGAACTACTGGAGAAGCCACTTGAGGAAAAAGTTCCCCATTCAACTAGAAGGTTCATGGAAAAATCTACGTTAGTTCTTGATATATTCAATTGCTTTAACCAGTTTCTTTTACAGACTGCAAAGTAAAACATGGGAAACCAGAGAAGCTCTCATTAAGGCATGACCAAAATGAAAGGGACGTTCCCTTATACAATCATTTCGAGTTGTCGAACCTCGAGATCACAAGTTCGCCATACGAAACTCGATTATCAAACTGGATATCGAATCCATTAATGAACGAGAAGCAGGAAGTGAATCATCATGAAGAGTGCAACAACTCAGAATTCTGTTTCTACTATCCAAATATGAACTATGCACGTAGAGATGATCAATCGGACCATTTCTGGGATTCACTCACTCCTCTTTGGGATATCGAGTAACAAATCAAATGTCGTCTAAAGTGCCACTGAAAATAAAATATTCCAAGTTGGAAACTTCAACAATCGACAAACTATAGAACG

mRNA sequence

ATGGCTACTCATTCAGCCCTTCAAACTGAGATACAGCGTAGAGGACCTTGGCTCGAACAGGAAGACAGGCAGCTCACCATGTTTGTAACTCGCATGGGAGAGAGAAAGTGGGACTCGATCGCCAAAGCTTCAGGGCTTGAGAGAAGTGGGAAGAGCTGTAGATTCAGATGGCTTAACTATCTCCGCCCTAGTCTTAAACGTGATCGCATAAACAGTGAGGAAGAAGAAATCATTCTGAAACTTCATAAGAAATGGGGTAACAAATGGTCGAGAATCGCACGATGGCTTCCAGGAAGAACTGATAACGAGATCAAGAACTACTGGAGAAGCCACTTGAGGAAAAAGTTCCCCATTCAACTAGAAGGTTCATGGAAAAATCTACACTGCAAAGTAAAACATGGGAAACCAGAGAAGCTCTCATTAAGGCATGACCAAAATGAAAGGGACGTTCCCTTATACAATCATTTCGAGTTGTCGAACCTCGAGATCACAAGTTCGCCATACGAAACTCGATTATCAAACTGGATATCGAATCCATTAATGAACGAGAAGCAGGAAGTGAATCATCATGAAGAGTGCAACAACTCAGAATTCTGTTTCTACTATCCAAATATGAACTATGCACGTAGAGATGATCAATCGGACCATTTCTGGGATTCACTCACTCCTCTTTGGGATATCGAGTAACAAATCAAATGTCGTCTAAAGTGCCACTGAAAATAAAATATTCCAAGTTGGAAACTTCAACAATCGACAAACTATAGAACG

Coding sequence (CDS)

ATGGCTACTCATTCAGCCCTTCAAACTGAGATACAGCGTAGAGGACCTTGGCTCGAACAGGAAGACAGGCAGCTCACCATGTTTGTAACTCGCATGGGAGAGAGAAAGTGGGACTCGATCGCCAAAGCTTCAGGGCTTGAGAGAAGTGGGAAGAGCTGTAGATTCAGATGGCTTAACTATCTCCGCCCTAGTCTTAAACGTGATCGCATAAACAGTGAGGAAGAAGAAATCATTCTGAAACTTCATAAGAAATGGGGTAACAAATGGTCGAGAATCGCACGATGGCTTCCAGGAAGAACTGATAACGAGATCAAGAACTACTGGAGAAGCCACTTGAGGAAAAAGTTCCCCATTCAACTAGAAGGTTCATGGAAAAATCTACACTGCAAAGTAAAACATGGGAAACCAGAGAAGCTCTCATTAAGGCATGACCAAAATGAAAGGGACGTTCCCTTATACAATCATTTCGAGTTGTCGAACCTCGAGATCACAAGTTCGCCATACGAAACTCGATTATCAAACTGGATATCGAATCCATTAATGAACGAGAAGCAGGAAGTGAATCATCATGAAGAGTGCAACAACTCAGAATTCTGTTTCTACTATCCAAATATGAACTATGCACGTAGAGATGATCAATCGGACCATTTCTGGGATTCACTCACTCCTCTTTGGGATATCGAGTAA
Homology
[Close]
BLAST of CmoCh06G003950 vs. Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-38
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1 

Query: 13  RRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDRINS 72
           R+GPW EQED QL   V   GER+WD IAK SGL R+GKSCR RW+NYL P LKR R++ 
Sbjct: 9   RKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSP 68

Query: 73  EEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKK 116
            EE +IL+LH +WGN+WSRIAR LPGRTDNEIKNYWR+H+RKK
Sbjct: 69  HEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111

[Close]
BLAST of CmoCh06G003950 vs. Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-38
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 7   LQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLK 66
           +Q E  R+GPW EQED  L  FV   G+R+WD IAK SGL R+GKSCR RW+NYL P LK
Sbjct: 2   MQEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLK 61

Query: 67  RDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKK 116
           R ++  +EE ++L+LH KWGN+WS+IAR LPGRTDNEIKNYWR+H+RKK
Sbjct: 62  RGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 110

[Close]
BLAST of CmoCh06G003950 vs. Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-37
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 10  EIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDR 69
           E  R+GPW EQED QL   V   G+R+WD +AK SGL R+GKSCR RW+NYL P LK  R
Sbjct: 6   EEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGR 65

Query: 70  INSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKK 116
           ++ +EE +I++LH +WGN+WSRIAR LPGRTDNEIKNYWR+H+RKK
Sbjct: 66  MSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111

[Close]
BLAST of CmoCh06G003950 vs. Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-37
Identity = 69/109 (63.30%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 7   LQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLK 66
           L  E  R+GPW EQED  L  FV   G+R+WD +AK SGL R+GKSCR RW+NYL P LK
Sbjct: 3   LVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLK 62

Query: 67  RDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKK 116
           R ++  +EE ++L+LH KWGN+WS+IAR LPGRTDNEIKNYWR+H+RKK
Sbjct: 63  RGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 111

[Close]
BLAST of CmoCh06G003950 vs. Swiss-Prot
Match: MY108_ARATH (Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.4e-33
Identity = 57/102 (55.88%), Postives = 83/102 (81.37%), Query Frame = 1 

Query: 13  RRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDRINS 72
           +RGPW  +ED +L  ++   GE +W+S+++ +GL+R+GKSCR RWLNYLRP ++R  I  
Sbjct: 20  KRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRGNITL 79

Query: 73  EEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRK 115
           EE+ +IL+LH +WGN+WS+IA++LPGRTDNEIKNYWR+ ++K
Sbjct: 80  EEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 121

[Close]
BLAST of CmoCh06G003950 vs. TrEMBL
Match: A0A0A0LB54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G742860 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.8e-69
Identity = 146/236 (61.86%), Postives = 167/236 (70.76%), Query Frame = 1 

Query: 1   MATHSALQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNY 60
           MA+ SALQTE  RRGPWLE+EDR+LT+FVTRMGERKWD IAKASGLERSGKSCRFRWLNY
Sbjct: 1   MASQSALQTERLRRGPWLEEEDRRLTIFVTRMGERKWDLIAKASGLERSGKSCRFRWLNY 60

Query: 61  LRPSLKRDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQL 120
           LRP+LKRDRINSEEEEIILKLHKKWGNK  +                     RK+  + L
Sbjct: 61  LRPNLKRDRINSEEEEIILKLHKKWGNKVEQ---------------------RKEDKVSL 120

Query: 121 EGSWKNLHCKVKHGKPEKLSLRHDQNER-DVP----LYNHFE--LSNLEITSSPYETRLS 180
           +       C +         +RHD NER D+P     YNHF+   SNL ITSSPYE R+S
Sbjct: 121 K------KCGLLVS-----PIRHDHNERKDIPSCNISYNHFDFGFSNLAITSSPYEIRVS 180

Query: 181 NWISNPLMNEKQEVN-HHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLWDIE 229
           NWIS+ L NEK EVN HHE+CN+ +FCF YPNMN+A RDD +DHFWDSL  LWD+E
Sbjct: 181 NWISHQLTNEKPEVNDHHEDCNSLDFCFCYPNMNFAERDDMTDHFWDSLASLWDME 204

[Close]
BLAST of CmoCh06G003950 vs. TrEMBL
Match: A0A141BT68_DIOKA (MYB6 OS=Diospyros kaki PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.4e-54
Identity = 120/236 (50.85%), Postives = 157/236 (66.53%), Query Frame = 1 

Query: 7   LQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLK 66
           +Q E  R+GPWLE+ED++L   V  +GER+WDS+AKASGL R+GKSCR RWLNYLRP+LK
Sbjct: 4   MQGEELRKGPWLEEEDKRLAASVALLGERRWDSLAKASGLRRTGKSCRLRWLNYLRPNLK 63

Query: 67  RDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQL--EGSW 126
           RDR+ +EEE IIL+LHK+WGNKWS+IAR LPGRTDNEIKNYWRSHLR+K   QL  +G++
Sbjct: 64  RDRLTAEEETIILQLHKQWGNKWSKIARSLPGRTDNEIKNYWRSHLRRK-AAQLGGQGNY 123

Query: 127 KNLHCKVKHG----KPEKLSLRHDQNE--------RDVPLYNHFELSNLEITSSPYETRL 186
           +++    K      + + +SLR    E            + + F LSN  I  SPYETR+
Sbjct: 124 QSIISNAKQDLLTPECDTVSLRSSNGECNKGDSLRTSDDICDMFGLSNFGIVGSPYETRM 183

Query: 187 SNWISNPLMNEKQEVNHHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLWDIE 229
           ++W+S+ L      V HH +C +SE CF +P+      +D     WDSL  LWD E
Sbjct: 184 TDWLSH-LSYGPGGVYHHGDCQSSELCFCFPS------EDSYGGSWDSLGFLWDTE 231

[Close]
BLAST of CmoCh06G003950 vs. TrEMBL
Match: A0A097HUK1_JATCU (MYB family protein OS=Jatropha curcas PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.5e-51
Identity = 114/232 (49.14%), Postives = 148/232 (63.79%), Query Frame = 1 

Query: 13  RRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDRINS 72
           R+GPWLE+ED QL  FVT  GERKWD IA ASGL+RSGKSCR RWLNYLRP+LKR  I++
Sbjct: 14  RKGPWLEEEDEQLVTFVTLFGERKWDFIATASGLKRSGKSCRLRWLNYLRPNLKRGHISA 73

Query: 73  EEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQLEGSWKNLHCKVK 132
           EEE+II++LH+ WGNKW++IAR LPGRTDNEIKNYWR+HLRKK   Q EG++    CK  
Sbjct: 74  EEEQIIIQLHELWGNKWAKIARKLPGRTDNEIKNYWRTHLRKKIQAQ-EGNF----CKEN 133

Query: 133 HGKPEKLSLRHDQNE----------------RDVPLYNHFELSNLEITSSPYETRLSNWI 192
           + K + L  + D +                     L  ++ELS+L   SSPYETRL +W+
Sbjct: 134 NAKQDFLYQKGDTSSWNCNMEEYKSVADNIGTQESLDQYYELSSLTYLSSPYETRLYDWM 193

Query: 193 SN-PLMNEKQEVNHHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLWDI 228
           S     +++ E+  H +C+    CF Y  + +   D   +   DSL  LWD+
Sbjct: 194 SEFSGDHDQSEMKIHGDCSGFCSCFCY--LQWKAEDGTDNSILDSLGSLWDM 238

[Close]
BLAST of CmoCh06G003950 vs. TrEMBL
Match: A0A067JZ69_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16571 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.5e-51
Identity = 114/232 (49.14%), Postives = 148/232 (63.79%), Query Frame = 1 

Query: 13  RRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDRINS 72
           R+GPWLE+ED QL  FVT  GERKWD IA ASGL+RSGKSCR RWLNYLRP+LKR  I++
Sbjct: 470 RKGPWLEEEDEQLVTFVTLFGERKWDFIATASGLKRSGKSCRLRWLNYLRPNLKRGHISA 529

Query: 73  EEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQLEGSWKNLHCKVK 132
           EEE+II++LH+ WGNKW++IAR LPGRTDNEIKNYWR+HLRKK   Q EG++    CK  
Sbjct: 530 EEEQIIIQLHELWGNKWAKIARKLPGRTDNEIKNYWRTHLRKKIQAQ-EGNF----CKEN 589

Query: 133 HGKPEKLSLRHDQNE----------------RDVPLYNHFELSNLEITSSPYETRLSNWI 192
           + K + L  + D +                     L  ++ELS+L   SSPYETRL +W+
Sbjct: 590 NAKQDFLYQKGDTSSWNCNMEEYKSVADNIGTQESLDQYYELSSLTYLSSPYETRLYDWM 649

Query: 193 SN-PLMNEKQEVNHHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLWDI 228
           S     +++ E+  H +C+    CF Y  + +   D   +   DSL  LWD+
Sbjct: 650 SEFSGDHDQSEMKIHGDCSGFCSCFCY--LQWKAEDGTDNSILDSLGSLWDM 694

[Close]
BLAST of CmoCh06G003950 vs. TrEMBL
Match: A5BED7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042419 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 112/231 (48.48%), Postives = 150/231 (64.94%), Query Frame = 1 

Query: 7   LQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLK 66
           +Q E  R+G WLE+ED +LT FV  +GER+WDSIA+ASGL+RSGKSCR RWLNYLRP LK
Sbjct: 1   MQGENLRKGSWLEEEDERLTAFVGLLGERRWDSIARASGLKRSGKSCRLRWLNYLRPDLK 60

Query: 67  RDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQLEGSWKN 126
           R +I++EEE+IIL+LHK+WGNKWS IAR LPGRTDNEIKNYWR+HLRK+  I+ + S+++
Sbjct: 61  RCQISAEEEQIILQLHKRWGNKWSWIARSLPGRTDNEIKNYWRTHLRKRTEIEEQDSFQS 120

Query: 127 LHCKVK-------HGKPEKLSLRHDQNERDV-----PLYNHFELSNLEITSSPYETRLSN 186
                K       +   +K +     +  DV       ++   LSN   TSSPYE R S+
Sbjct: 121 EIDNAKQDFLIQSNASTQKSNYEDCGSVEDVLGATDDSFDALALSNFAFTSSPYENRXSD 180

Query: 187 WISNPLMNEKQEVNHHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLW 226
           W+S  L ++  E+ +H E N+ +  F YP   +   +D+    WD    LW
Sbjct: 181 WMSG-LSSDLXEMKYHGEWNSLDSSFGYPAGIF---EDRDTSVWDGSGSLW 227

[Close]
BLAST of CmoCh06G003950 vs. TAIR10
Match: AT3G53200.1 (AT3G53200.1 myb domain protein 27)

HSP 1 Score: 162.2 bits (409), Expect = 3.9e-40
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1 

Query: 10  EIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDR 69
           E  RRGPWLE+ED +L   ++ +GER+WDS+A  SGL+RSGKSCR RW+NYL P+LKR  
Sbjct: 7   ETLRRGPWLEEEDERLVKVISLLGERRWDSLAIVSGLKRSGKSCRLRWMNYLNPTLKRGP 66

Query: 70  INSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQLEG 123
           ++ EEE II +LH  WGNKWS+IAR LPGRTDNEIKNYWR+H RKK   Q  G
Sbjct: 67  MSQEEERIIFQLHALWGNKWSKIARRLPGRTDNEIKNYWRTHYRKKQEAQNYG 119

[Close]
BLAST of CmoCh06G003950 vs. TAIR10
Match: AT3G46130.1 (AT3G46130.1 myb domain protein 48)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 7   LQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLK 66
           +Q E  R+GPW EQED  L  FV   G+R+WD IAK SGL R+GKSCR RW+NYL P LK
Sbjct: 2   MQEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLK 61

Query: 67  RDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKK 116
           R ++  +EE ++L+LH KWGN+WS+IAR LPGRTDNEIKNYWR+H+RKK
Sbjct: 62  RGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 110

[Close]
BLAST of CmoCh06G003950 vs. TAIR10
Match: AT5G59780.3 (AT5G59780.3 myb domain protein 59)

HSP 1 Score: 157.5 bits (397), Expect = 9.6e-39
Identity = 69/109 (63.30%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 7   LQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLK 66
           L  E  R+GPW EQED  L  FV   G+R+WD +AK SGL R+GKSCR RW+NYL P LK
Sbjct: 3   LVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLK 62

Query: 67  RDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKK 116
           R ++  +EE ++L+LH KWGN+WS+IAR LPGRTDNEIKNYWR+H+RKK
Sbjct: 63  RGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 111

[Close]
BLAST of CmoCh06G003950 vs. TAIR10
Match: AT3G30210.1 (AT3G30210.1 myb domain protein 121)

HSP 1 Score: 152.1 bits (383), Expect = 4.0e-37
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 13  RRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDRINS 72
           R+GPW  +ED+ L  +VT  GE +W ++AK +GL RSGKSCR RW+NYLRP LKR +I  
Sbjct: 28  RKGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLNRSGKSCRLRWVNYLRPGLKRGQITP 87

Query: 73  EEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRK 115
           +EE IIL+LH  WGNKWS IAR+LPGRTDNEIKNYWR+H +K
Sbjct: 88  QEEGIILELHSLWGNKWSTIARYLPGRTDNEIKNYWRTHYKK 129

[Close]
BLAST of CmoCh06G003950 vs. TAIR10
Match: AT3G24310.1 (AT3G24310.1 myb domain protein 305)

HSP 1 Score: 151.8 bits (382), Expect = 5.3e-37
Identity = 71/149 (47.65%), Postives = 99/149 (66.44%), Query Frame = 1 

Query: 13  RRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDRINS 72
           R+GPW  +EDR L  +V   GE +W+S+A+ +GL+R+GKSCR RW+NYLRP LKR +I  
Sbjct: 19  RKGPWTAEEDRLLIDYVQLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITP 78

Query: 73  EEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQLEGSWKNLHCKVK 132
            EE IIL+LH KWGN+WS IAR LPGRTDNEIKNYWR+H +KK       + K  +  +K
Sbjct: 79  HEETIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPTNSAEKTKNRILK 138

Query: 133 HGKPEKLSLRHDQNERDVPLYNHFELSNL 162
             + ++      Q E+ +  +N  ++  +
Sbjct: 139 RQQFQQQRQMELQQEQQLLQFNQIDMKKI 167

[Close]
BLAST of CmoCh06G003950 vs. NCBI nr
Match: gi|449440415|ref|XP_004137980.1| (PREDICTED: myb-related protein 340 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 1.0e-95
Identity = 181/246 (73.58%), Postives = 201/246 (81.71%), Query Frame = 1 

Query: 1   MATHSALQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNY 60
           MA+ SALQTE  RRGPWLE+EDR+LT+FVTRMGERKWD IAKASGLERSGKSCRFRWLNY
Sbjct: 1   MASQSALQTERLRRGPWLEEEDRRLTIFVTRMGERKWDLIAKASGLERSGKSCRFRWLNY 60

Query: 61  LRPSLKRDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQL 120
           LRP+LKRDRINSEEEEIILKLHKKWGNKWSRIA+WLPGRTDNEIKNYWRSHLRKKFPIQL
Sbjct: 61  LRPNLKRDRINSEEEEIILKLHKKWGNKWSRIAQWLPGRTDNEIKNYWRSHLRKKFPIQL 120

Query: 121 EGSWKNLHCKVKHGKPEKLSL----------RHDQNER-DVP----LYNHFE--LSNLEI 180
           EG+      KV+  K +K+SL          RHD NER D+P     YNHF+   SNL I
Sbjct: 121 EGN------KVEQRKEDKVSLKKCGLLVSPIRHDHNERKDIPSCNISYNHFDFGFSNLAI 180

Query: 181 TSSPYETRLSNWISNPLMNEKQEVN-HHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLT 229
           TSSPYE R+SNWIS+ L NEK EVN HHE+CN+ +FCF YPNMN+A RDD +DHFWDSL 
Sbjct: 181 TSSPYEIRVSNWISHQLTNEKPEVNDHHEDCNSLDFCFCYPNMNFAERDDMTDHFWDSLA 240

[Close]
BLAST of CmoCh06G003950 vs. NCBI nr
Match: gi|659084128|ref|XP_008442723.1| (PREDICTED: transcription factor MYB114-like [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.3e-95
Identity = 181/246 (73.58%), Postives = 199/246 (80.89%), Query Frame = 1 

Query: 1   MATHSALQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNY 60
           MA  SALQTE  RRGPWLE EDRQLT+FVTRMGERKWD IAKASGLERSGKSCRFRWLNY
Sbjct: 1   MANQSALQTERLRRGPWLEAEDRQLTIFVTRMGERKWDLIAKASGLERSGKSCRFRWLNY 60

Query: 61  LRPSLKRDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQL 120
           LRP+LKRDRINSEEEEIILKLHKKWGNKWSRIA+WLPGRTDNEIKNYWRSHLRKKFPIQL
Sbjct: 61  LRPNLKRDRINSEEEEIILKLHKKWGNKWSRIAQWLPGRTDNEIKNYWRSHLRKKFPIQL 120

Query: 121 EGSWKNLHCKVKHGKPEKLSL----------RHDQNER-DVPL----YNHFE--LSNLEI 180
           EG+      KV+HGK +K+SL          RHD NER D+P      NHF+   SN EI
Sbjct: 121 EGN------KVEHGKQDKVSLKKCGLLGSPNRHDHNERKDIPFCNISCNHFDFGFSNFEI 180

Query: 181 TSSPYETRLSNWISNPLMNEKQEV-NHHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLT 229
           TSSPYE R+SNWIS+ L N K EV +HHE+CN+ +FCF YPNMN+A RDD +DHFWDSL 
Sbjct: 181 TSSPYEIRVSNWISHQLTNGKPEVIDHHEDCNSLDFCFCYPNMNFAERDDLTDHFWDSLA 240

[Close]
BLAST of CmoCh06G003950 vs. NCBI nr
Match: gi|700203865|gb|KGN58998.1| (hypothetical protein Csa_3G742860 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 8.4e-69
Identity = 146/236 (61.86%), Postives = 167/236 (70.76%), Query Frame = 1 

Query: 1   MATHSALQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNY 60
           MA+ SALQTE  RRGPWLE+EDR+LT+FVTRMGERKWD IAKASGLERSGKSCRFRWLNY
Sbjct: 1   MASQSALQTERLRRGPWLEEEDRRLTIFVTRMGERKWDLIAKASGLERSGKSCRFRWLNY 60

Query: 61  LRPSLKRDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQL 120
           LRP+LKRDRINSEEEEIILKLHKKWGNK  +                     RK+  + L
Sbjct: 61  LRPNLKRDRINSEEEEIILKLHKKWGNKVEQ---------------------RKEDKVSL 120

Query: 121 EGSWKNLHCKVKHGKPEKLSLRHDQNER-DVP----LYNHFE--LSNLEITSSPYETRLS 180
           +       C +         +RHD NER D+P     YNHF+   SNL ITSSPYE R+S
Sbjct: 121 K------KCGLLVS-----PIRHDHNERKDIPSCNISYNHFDFGFSNLAITSSPYEIRVS 180

Query: 181 NWISNPLMNEKQEVN-HHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLWDIE 229
           NWIS+ L NEK EVN HHE+CN+ +FCF YPNMN+A RDD +DHFWDSL  LWD+E
Sbjct: 181 NWISHQLTNEKPEVNDHHEDCNSLDFCFCYPNMNFAERDDMTDHFWDSLASLWDME 204

[Close]
BLAST of CmoCh06G003950 vs. NCBI nr
Match: gi|868987220|gb|AKP06174.1| (MYB6 [Diospyros kaki])

HSP 1 Score: 221.1 bits (562), Expect = 2.0e-54
Identity = 120/236 (50.85%), Postives = 157/236 (66.53%), Query Frame = 1 

Query: 7   LQTEIQRRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLK 66
           +Q E  R+GPWLE+ED++L   V  +GER+WDS+AKASGL R+GKSCR RWLNYLRP+LK
Sbjct: 4   MQGEELRKGPWLEEEDKRLAASVALLGERRWDSLAKASGLRRTGKSCRLRWLNYLRPNLK 63

Query: 67  RDRINSEEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQL--EGSW 126
           RDR+ +EEE IIL+LHK+WGNKWS+IAR LPGRTDNEIKNYWRSHLR+K   QL  +G++
Sbjct: 64  RDRLTAEEETIILQLHKQWGNKWSKIARSLPGRTDNEIKNYWRSHLRRK-AAQLGGQGNY 123

Query: 127 KNLHCKVKHG----KPEKLSLRHDQNE--------RDVPLYNHFELSNLEITSSPYETRL 186
           +++    K      + + +SLR    E            + + F LSN  I  SPYETR+
Sbjct: 124 QSIISNAKQDLLTPECDTVSLRSSNGECNKGDSLRTSDDICDMFGLSNFGIVGSPYETRM 183

Query: 187 SNWISNPLMNEKQEVNHHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLWDIE 229
           ++W+S+ L      V HH +C +SE CF +P+      +D     WDSL  LWD E
Sbjct: 184 TDWLSH-LSYGPGGVYHHGDCQSSELCFCFPS------EDSYGGSWDSLGFLWDTE 231

[Close]
BLAST of CmoCh06G003950 vs. NCBI nr
Match: gi|643717739|gb|KDP29182.1| (hypothetical protein JCGZ_16571 [Jatropha curcas])

HSP 1 Score: 209.1 bits (531), Expect = 7.9e-51
Identity = 114/232 (49.14%), Postives = 148/232 (63.79%), Query Frame = 1 

Query: 13  RRGPWLEQEDRQLTMFVTRMGERKWDSIAKASGLERSGKSCRFRWLNYLRPSLKRDRINS 72
           R+GPWLE+ED QL  FVT  GERKWD IA ASGL+RSGKSCR RWLNYLRP+LKR  I++
Sbjct: 470 RKGPWLEEEDEQLVTFVTLFGERKWDFIATASGLKRSGKSCRLRWLNYLRPNLKRGHISA 529

Query: 73  EEEEIILKLHKKWGNKWSRIARWLPGRTDNEIKNYWRSHLRKKFPIQLEGSWKNLHCKVK 132
           EEE+II++LH+ WGNKW++IAR LPGRTDNEIKNYWR+HLRKK   Q EG++    CK  
Sbjct: 530 EEEQIIIQLHELWGNKWAKIARKLPGRTDNEIKNYWRTHLRKKIQAQ-EGNF----CKEN 589

Query: 133 HGKPEKLSLRHDQNE----------------RDVPLYNHFELSNLEITSSPYETRLSNWI 192
           + K + L  + D +                     L  ++ELS+L   SSPYETRL +W+
Sbjct: 590 NAKQDFLYQKGDTSSWNCNMEEYKSVADNIGTQESLDQYYELSSLTYLSSPYETRLYDWM 649

Query: 193 SN-PLMNEKQEVNHHEECNNSEFCFYYPNMNYARRDDQSDHFWDSLTPLWDI 228
           S     +++ E+  H +C+    CF Y  + +   D   +   DSL  LWD+
Sbjct: 650 SEFSGDHDQSEMKIHGDCSGFCSCFCY--LQWKAEDGTDNSILDSLGSLWDM 694

The following BLAST results are available for this feature:
BLAST of CmoCh06G003950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYBA2_ORYSJ2.0e-3868.93Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1[more]
MYB48_ARATH3.4e-3864.22Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1[more]
MYBA1_ORYSJ1.7e-3764.15Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1[more]
MYB59_ARATH1.7e-3763.30Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2[more]
MY108_ARATH7.4e-3355.88Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1[more]
BLAST of CmoCh06G003950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB54_CUCSA5.8e-6961.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G742860 PE=4 SV=1[more]
A0A141BT68_DIOKA1.4e-5450.85MYB6 OS=Diospyros kaki PE=2 SV=1[more]
A0A097HUK1_JATCU5.5e-5149.14MYB family protein OS=Jatropha curcas PE=4 SV=1[more]
A0A067JZ69_JATCU5.5e-5149.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16571 PE=4 SV=1[more]
A5BED7_VITVI1.0e-4948.48Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042419 PE=4 SV=1[more]
BLAST of CmoCh06G003950 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G53200.13.9e-4064.60 myb domain protein 27[more]
AT3G46130.11.9e-3964.22 myb domain protein 48[more]
AT5G59780.39.6e-3963.30 myb domain protein 59[more]
AT3G30210.14.0e-3764.71 myb domain protein 121[more]
AT3G24310.15.3e-3747.65 myb domain protein 305[more]
BLAST of CmoCh06G003950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440415|ref|XP_004137980.1|1.0e-9573.58PREDICTED: myb-related protein 340 [Cucumis sativus][more]
gi|659084128|ref|XP_008442723.1|2.3e-9573.58PREDICTED: transcription factor MYB114-like [Cucumis melo][more]
gi|700203865|gb|KGN58998.1|8.4e-6961.86hypothetical protein Csa_3G742860 [Cucumis sativus][more]
gi|868987220|gb|AKP06174.1|2.0e-5450.85MYB6 [Diospyros kaki][more]
gi|643717739|gb|KDP29182.1|7.9e-5149.14hypothetical protein JCGZ_16571 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017930Myb_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G003950.1CmoCh06G003950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..61
score: 5.0E-12coord: 72..112
score: 1.2
IPR001005SANT/Myb domainSMARTSM00717santcoord: 13..63
score: 1.1E-11coord: 66..114
score: 1.3
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 15..68
score: 3.5E-19coord: 69..115
score: 1.2
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 13..108
score: 4.87
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 9..61
score: 14.602coord: 62..116
score: 23
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 1..228
score: 1.1
NoneNo IPR availablePANTHERPTHR10641:SF636SUBFAMILY NOT NAMEDcoord: 1..228
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G003950Cucsa.306580Cucumber (Gy14) v1cgycmoB0844
CmoCh06G003950CmaCh06G004020Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G003950Cla017787Watermelon (97103) v1cmowmB782
CmoCh06G003950Csa3G742860Cucumber (Chinese Long) v2cmocuB807
CmoCh06G003950MELO3C009376Melon (DHL92) v3.5.1cmomeB747
CmoCh06G003950ClCG10G019950Watermelon (Charleston Gray)cmowcgB729
CmoCh06G003950CSPI03G33540Wild cucumber (PI 183967)cmocpiB815
CmoCh06G003950Lsi03G019930Bottle gourd (USVL1VR-Ls)cmolsiB747
CmoCh06G003950Cp4.1LG08g10750Cucurbita pepo (Zucchini)cmocpeB797
CmoCh06G003950MELO3C009376.2Melon (DHL92) v3.6.1cmomedB849
CmoCh06G003950CsaV3_3G036140Cucumber (Chinese Long) v3cmocucB0954
CmoCh06G003950Cla97C10G203110Watermelon (97103) v2cmowmbB818
CmoCh06G003950Bhi11G001750Wax gourdcmowgoB0983
CmoCh06G003950CsGy3G031300Cucumber (Gy14) v2cgybcmoB402
CmoCh06G003950Carg00960Silver-seed gourdcarcmoB0227
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G003950Cucumber (Chinese Long) v3cmocucB0979
CmoCh06G003950Cucumber (Chinese Long) v3cmocucB0981
CmoCh06G003950Watermelon (97103) v2cmowmbB826
CmoCh06G003950Watermelon (97103) v2cmowmbB845
CmoCh06G003950Wax gourdcmowgoB1024
CmoCh06G003950Wax gourdcmowgoB1027
CmoCh06G003950Wax gourdcmowgoB1031
CmoCh06G003950Cucurbita moschata (Rifu)cmocmoB222
CmoCh06G003950Cucurbita moschata (Rifu)cmocmoB422
CmoCh06G003950Cucurbita moschata (Rifu)cmocmoB441
CmoCh06G003950Cucurbita moschata (Rifu)cmocmoB454
CmoCh06G003950Cucurbita moschata (Rifu)cmocmoB483
CmoCh06G003950Cucumber (Gy14) v1cgycmoB0325
CmoCh06G003950Cucumber (Gy14) v1cgycmoB1070
CmoCh06G003950Cucurbita maxima (Rimu)cmacmoB268
CmoCh06G003950Cucurbita maxima (Rimu)cmacmoB569
CmoCh06G003950Cucurbita maxima (Rimu)cmacmoB627
CmoCh06G003950Wild cucumber (PI 183967)cmocpiB838
CmoCh06G003950Wild cucumber (PI 183967)cmocpiB840
CmoCh06G003950Cucumber (Chinese Long) v2cmocuB828
CmoCh06G003950Cucumber (Chinese Long) v2cmocuB830
CmoCh06G003950Melon (DHL92) v3.5.1cmomeB739
CmoCh06G003950Melon (DHL92) v3.5.1cmomeB763
CmoCh06G003950Watermelon (Charleston Gray)cmowcgB738
CmoCh06G003950Watermelon (Charleston Gray)cmowcgB742
CmoCh06G003950Watermelon (97103) v1cmowmB797
CmoCh06G003950Watermelon (97103) v1cmowmB798
CmoCh06G003950Cucurbita pepo (Zucchini)cmocpeB775
CmoCh06G003950Cucurbita pepo (Zucchini)cmocpeB782
CmoCh06G003950Cucurbita pepo (Zucchini)cmocpeB783
CmoCh06G003950Bottle gourd (USVL1VR-Ls)cmolsiB736
CmoCh06G003950Bottle gourd (USVL1VR-Ls)cmolsiB750
CmoCh06G003950Cucumber (Gy14) v2cgybcmoB678
CmoCh06G003950Cucumber (Gy14) v2cgybcmoB835
CmoCh06G003950Melon (DHL92) v3.6.1cmomedB837
CmoCh06G003950Melon (DHL92) v3.6.1cmomedB841
CmoCh06G003950Silver-seed gourdcarcmoB0351
CmoCh06G003950Silver-seed gourdcarcmoB1241