CmoCh06G003160 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G003160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCell division control 48-E-like protein
LocationCmo_Chr06 : 1545429 .. 1546336 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGAGATTACGACAAGCAACCACAATCAATGACGGTGATCATCATGAACATTTGGTTATGCCGTAGATAAATTAATTCGTCGATTTCAGGAAAATGAATTCAAATGTGCTCGAAGAGCGTATCCATACATTGAACCATTGGATCAGCGATCAACATTTAAAAAGGAGTTTGATATTTGAAGTAAAACGGAAAATCAGACCTACAGAAACCCTAACGATTATCATAACTCATCAGCATTTGCAATCAAAGAACAGTAATCTACCGAAGAAAAAAGTTGTTATTCATTAGAACTATTACTTCGATATACCTATGAGCAGCGAGATCCAAATCTACACAACAAATTACCGTAACTGGAACACGTAACCCTAATCCCAAAATTCACCGATTTCGAAACCTAAGAGCTCGTAAATTTGGTGACCGCCTTAGTTCCTTCAGATACAGCGTGCTTTGCTAACTCACCAGGCAACACCAATCGAACGGCGGTCTGGATCTCCCGAGAGGTGATCGTAGGTTTCTTGTTGTATCTCGCCAATTTCGAGGACTCTTGCGCAAGTTTCTCGAAGATGTCGTTGATGAAACTGTTCATAATCCCCATGGCCTTGCTGGAAATTCCAATGTCAGGATGAACCTGCTTCAACACCTTGAAGATGTAGATCTTGTAAGTCTCGGTGCTCTTTTTGATTTTCTTCTTCTTCTTATCGCCGCTGTCCTTGGCGATCTTCTTCTCGGCCTTTGGCTTCTTCTCCGCCGAGGTTGGGGTTTTCTCCGCCGGTTTCTTCTCTGCTGGCTTTTTCTCGGCTTTTGTTGGCGCCATTGTTGGAGAGAAGAAAATTTGCAGAAACTCAAAAGCGTAGAAACAGGGGAGGGATTGAACGATTTCATGAATCAGGGTGGAGGAGTCATTATA

mRNA sequence

CCCGAGATTACGACAAGCAACCACAATCAATGACGGAAAATGAATTCAAATGTGCTCGAAGAGCGTATCCATACATTGAACCATTGGATCAGCGATCAACATTTAAAAAGGAGCAACACCAATCGAACGGCGGTCTGGATCTCCCGAGAGGTGATCGTAGGTTTCTTGTTGTATCTCGCCAATTTCGAGGACTCTTGCGCAAGTTTCTCGAAGATGTCGTTGATGAAACTGTTCATAATCCCCATGGCCTTGCTGGAAATTCCAATGTCAGGATGAACCTGCTTCAACACCTTGAAGATGTAGATCTTGTAAGTCTCGGTGCTCTTTTTGATTTTCTTCTTCTTCTTATCGCCGCTGTCCTTGGCGATCTTCTTCTCGGCCTTTGGCTTCTTCTCCGCCGAGGTTGGGGTTTTCTCCGCCGGTTTCTTCTCTGCTGGCTTTTTCTCGGCTTTTGTTGGCGCCATTGTTGGAGAGAAGAAAATTTGCAGAAACTCAAAAGCGTAGAAACAGGGGAGGGATTGAACGATTTCATGAATCAGGGTGGAGGAGTCATTATA

Coding sequence (CDS)

ATGACGGAAAATGAATTCAAATGTGCTCGAAGAGCGTATCCATACATTGAACCATTGGATCAGCGATCAACATTTAAAAAGGAGCAACACCAATCGAACGGCGGTCTGGATCTCCCGAGAGGTGATCGTAGGTTTCTTGTTGTATCTCGCCAATTTCGAGGACTCTTGCGCAAGTTTCTCGAAGATGTCGTTGATGAAACTGTTCATAATCCCCATGGCCTTGCTGGAAATTCCAATGTCAGGATGAACCTGCTTCAACACCTTGAAGATGTAGATCTTGTAAGTCTCGGTGCTCTTTTTGATTTTCTTCTTCTTCTTATCGCCGCTGTCCTTGGCGATCTTCTTCTCGGCCTTTGGCTTCTTCTCCGCCGAGGTTGGGGTTTTCTCCGCCGGTTTCTTCTCTGCTGGCTTTTTCTCGGCTTTTGTTGGCGCCATTGTTGGAGAGAAGAAAATTTGCAGAAACTCAAAAGCGTAGAAACAGGGGAGGGATTGAACGATTTCATGAATCAGGGTGGAGGAGTCATTATA
Homology
[Close]
BLAST of CmoCh06G003160 vs. TrEMBL
Match: C6SW10_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 68/111 (61.26%), Postives = 79/111 (71.17%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           +H+++GGLDLPRGD   LVV+ Q R  L + LEDVVDE VH+ HGLAGN+NV +NLL+ L
Sbjct: 65  EHETHGGLDLPRGDGGLLVVASQTRRFLGELLEDVVDEAVHDAHGLAGNTNVGVNLLEDL 124

Query: 89  EDVDLVSLGALFDFLLLLIAAVLGDLLLGLWLLLR----RGWGFLRRFLLC 136
           EDVDLV L AL   LLLL  + L DLLL L LLLR    R W  LRR LLC
Sbjct: 125 EDVDLVGLHALLRALLLLAPSFLRDLLLRLRLLLRRCPLRRWLLLRRLLLC 175

[Close]
BLAST of CmoCh06G003160 vs. TrEMBL
Match: C6T045_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-18
Identity = 68/123 (55.28%), Postives = 79/123 (64.23%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           QHQ + GL+LP G+ R LVV  + R  LR+ LEDVVDE VH+PHGL  N++VR+ LLQHL
Sbjct: 56  QHQPDRGLNLPGGNSRLLVVPGETRRFLRELLEDVVDEAVHDPHGLTRNTDVRVYLLQHL 115

Query: 89  EDVDLVSLGALFDFLLLLIAAVLGDLLLGLWLLLRRGWGFLRRFLLCWLFLGFCWRHC-- 148
           ED+DLV L AL   LLLL  A L +L L L LLLR      RR L  WL L    RH   
Sbjct: 116 EDIDLVGLHALLRPLLLLATAFLRNLFLCLRLLLR------RRLLSRWLLLR-SLRHSQK 171

Query: 149 WRE 150
           WRE
Sbjct: 176 WRE 171

[Close]
BLAST of CmoCh06G003160 vs. TrEMBL
Match: C6SZN8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           ++++NGGLDL RGD R LVV+R+    L + LEDVVDE VH+PHG AG+ +VR++LLQHL
Sbjct: 47  ENKTNGGLDLARGDGRLLVVAREPGRFLSELLEDVVDEAVHDPHGFAGDPDVRVHLLQHL 106

Query: 89  EDVDLVSLGALFDFLLLLIAA---VLGDLLLGLWLLLR---RGWGFLRRFLL 135
           E VDLV L AL   LLLL+ A    L DLLLG   L R   RG   LRRFLL
Sbjct: 107 EYVDLVRLHALLVSLLLLLLARGGFLWDLLLGFCFLRRSLLRGL-LLRRFLL 157

[Close]
BLAST of CmoCh06G003160 vs. TrEMBL
Match: A0A096RL09_MAIZE (Uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-14
Identity = 66/131 (50.38%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           +H+++GGLDL   D   LVV+R+  GL  + LEDVVDE VH+ HGL  +++VR++LLQHL
Sbjct: 33  EHEAHGGLDLAGRDGGLLVVARELGGLAGQLLEDVVDEGVHDGHGLGRDADVRVHLLQHL 92

Query: 89  EDVDLVSLGALFDFLL--LLIAAVL------GDLLLGLWL-----LLRRGWGFLRRFLLC 147
           EDVDLV L AL   LL  L +AA+L      GD LL L L     LLRRG   LRR L  
Sbjct: 93  EDVDLVRLHALLALLLATLALAALLAGGLARGDPLLRLGLLPGGRLLRRGL-LLRRLLRR 152

[Close]
BLAST of CmoCh06G003160 vs. TrEMBL
Match: A0A118K4G1_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014179 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 29 QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
          +++S+ GL+LP  +RR L+V  + RGLL + LED+VD+ VHNPH LA +SNVRMNLLQ+L
Sbjct: 8  KYKSHSGLNLPGSNRRLLIVPSKPRGLLSQLLEDIVDKRVHNPHSLARDSNVRMNLLQNL 67

Query: 89 EDVDL 94
          EDVDL
Sbjct: 68 EDVDL 72

[Close]
BLAST of CmoCh06G003160 vs. NCBI nr
Match: gi|255626177|gb|ACU13433.1| (unknown [Glycine max])

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-22
Identity = 68/111 (61.26%), Postives = 79/111 (71.17%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           +H+++GGLDLPRGD   LVV+ Q R  L + LEDVVDE VH+ HGLAGN+NV +NLL+ L
Sbjct: 65  EHETHGGLDLPRGDGGLLVVASQTRRFLGELLEDVVDEAVHDAHGLAGNTNVGVNLLEDL 124

Query: 89  EDVDLVSLGALFDFLLLLIAAVLGDLLLGLWLLLR----RGWGFLRRFLLC 136
           EDVDLV L AL   LLLL  + L DLLL L LLLR    R W  LRR LLC
Sbjct: 125 EDVDLVGLHALLRALLLLAPSFLRDLLLRLRLLLRRCPLRRWLLLRRLLLC 175

[Close]
BLAST of CmoCh06G003160 vs. NCBI nr
Match: gi|255629047|gb|ACU14868.1| (unknown [Glycine max])

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 68/123 (55.28%), Postives = 79/123 (64.23%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           QHQ + GL+LP G+ R LVV  + R  LR+ LEDVVDE VH+PHGL  N++VR+ LLQHL
Sbjct: 56  QHQPDRGLNLPGGNSRLLVVPGETRRFLRELLEDVVDEAVHDPHGLTRNTDVRVYLLQHL 115

Query: 89  EDVDLVSLGALFDFLLLLIAAVLGDLLLGLWLLLRRGWGFLRRFLLCWLFLGFCWRHC-- 148
           ED+DLV L AL   LLLL  A L +L L L LLLR      RR L  WL L    RH   
Sbjct: 116 EDIDLVGLHALLRPLLLLATAFLRNLFLCLRLLLR------RRLLSRWLLLR-SLRHSQK 171

Query: 149 WRE 150
           WRE
Sbjct: 176 WRE 171

[Close]
BLAST of CmoCh06G003160 vs. NCBI nr
Match: gi|351724823|ref|NP_001236047.1| (uncharacterized protein LOC100306507 [Glycine max])

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-17
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           ++++NGGLDL RGD R LVV+R+    L + LEDVVDE VH+PHG AG+ +VR++LLQHL
Sbjct: 47  ENKTNGGLDLARGDGRLLVVAREPGRFLSELLEDVVDEAVHDPHGFAGDPDVRVHLLQHL 106

Query: 89  EDVDLVSLGALFDFLLLLIAA---VLGDLLLGLWLLLR---RGWGFLRRFLL 135
           E VDLV L AL   LLLL+ A    L DLLLG   L R   RG   LRRFLL
Sbjct: 107 EYVDLVRLHALLVSLLLLLLARGGFLWDLLLGFCFLRRSLLRGL-LLRRFLL 157

[Close]
BLAST of CmoCh06G003160 vs. NCBI nr
Match: gi|414870240|tpg|DAA48797.1| (TPA: hypothetical protein ZEAMMB73_266052 [Zea mays])

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-14
Identity = 66/131 (50.38%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 29  QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
           +H+++GGLDL   D   LVV+R+  GL  + LEDVVDE VH+ HGL  +++VR++LLQHL
Sbjct: 33  EHEAHGGLDLAGRDGGLLVVARELGGLAGQLLEDVVDEGVHDGHGLGRDADVRVHLLQHL 92

Query: 89  EDVDLVSLGALFDFLL--LLIAAVL------GDLLLGLWL-----LLRRGWGFLRRFLLC 147
           EDVDLV L AL   LL  L +AA+L      GD LL L L     LLRRG   LRR L  
Sbjct: 93  EDVDLVRLHALLALLLATLALAALLAGGLARGDPLLRLGLLPGGRLLRRGL-LLRRLLRR 152

[Close]
BLAST of CmoCh06G003160 vs. NCBI nr
Match: gi|976923136|gb|KVI07483.1| (hypothetical protein Ccrd_014179 [Cynara cardunculus var. scolymus])

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 29 QHQSNGGLDLPRGDRRFLVVSRQFRGLLRKFLEDVVDETVHNPHGLAGNSNVRMNLLQHL 88
          +++S+ GL+LP  +RR L+V  + RGLL + LED+VD+ VHNPH LA +SNVRMNLLQ+L
Sbjct: 8  KYKSHSGLNLPGSNRRLLIVPSKPRGLLSQLLEDIVDKRVHNPHSLARDSNVRMNLLQNL 67

Query: 89 EDVDL 94
          EDVDL
Sbjct: 68 EDVDL 72

The following BLAST results are available for this feature:
BLAST of CmoCh06G003160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh06G003160 vs. TrEMBL
Match NameE-valueIdentityDescription
C6SW10_SOYBN3.2e-2261.26Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1[more]
C6T045_SOYBN2.8e-1855.28Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1[more]
C6SZN8_SOYBN3.1e-1758.04Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A096RL09_MAIZE4.1e-1450.38Uncharacterized protein OS=Zea mays PE=4 SV=1[more]
A0A118K4G1_CYNCS9.2e-1461.54Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014179 PE=4 ... [more]
BLAST of CmoCh06G003160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh06G003160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|255626177|gb|ACU13433.1|4.5e-2261.26unknown [Glycine max][more]
gi|255629047|gb|ACU14868.1|4.0e-1855.28unknown [Glycine max][more]
gi|351724823|ref|NP_001236047.1|4.4e-1758.04uncharacterized protein LOC100306507 [Glycine max][more]
gi|414870240|tpg|DAA48797.1|5.9e-1450.38TPA: hypothetical protein ZEAMMB73_266052 [Zea mays][more]
gi|976923136|gb|KVI07483.1|1.3e-1361.54hypothetical protein Ccrd_014179 [Cynara cardunculus var. scolymus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G003160.1CmoCh06G003160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G003160Cucurbita maxima (Rimu)cmacmoB268
CmoCh06G003160Cucurbita maxima (Rimu)cmacmoB568
CmoCh06G003160Cucurbita maxima (Rimu)cmacmoB624
CmoCh06G003160Cucurbita maxima (Rimu)cmacmoB664
CmoCh06G003160Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G003160Cucurbita maxima (Rimu)cmacmoB873
CmoCh06G003160Wild cucumber (PI 183967)cmocpiB815
CmoCh06G003160Wild cucumber (PI 183967)cmocpiB834
CmoCh06G003160Cucumber (Chinese Long) v2cmocuB807
CmoCh06G003160Cucumber (Chinese Long) v2cmocuB825
CmoCh06G003160Melon (DHL92) v3.5.1cmomeB741
CmoCh06G003160Melon (DHL92) v3.5.1cmomeB747
CmoCh06G003160Melon (DHL92) v3.5.1cmomeB764
CmoCh06G003160Watermelon (Charleston Gray)cmowcgB729
CmoCh06G003160Watermelon (Charleston Gray)cmowcgB738
CmoCh06G003160Watermelon (Charleston Gray)cmowcgB742
CmoCh06G003160Watermelon (97103) v1cmowmB782
CmoCh06G003160Watermelon (97103) v1cmowmB797
CmoCh06G003160Watermelon (97103) v1cmowmB798
CmoCh06G003160Cucurbita pepo (Zucchini)cmocpeB763
CmoCh06G003160Cucurbita pepo (Zucchini)cmocpeB775
CmoCh06G003160Cucurbita pepo (Zucchini)cmocpeB782
CmoCh06G003160Cucurbita pepo (Zucchini)cmocpeB783
CmoCh06G003160Cucurbita pepo (Zucchini)cmocpeB793
CmoCh06G003160Cucurbita pepo (Zucchini)cmocpeB797
CmoCh06G003160Bottle gourd (USVL1VR-Ls)cmolsiB738
CmoCh06G003160Bottle gourd (USVL1VR-Ls)cmolsiB739
CmoCh06G003160Bottle gourd (USVL1VR-Ls)cmolsiB747
CmoCh06G003160Cucumber (Gy14) v2cgybcmoB402
CmoCh06G003160Cucumber (Gy14) v2cgybcmoB536
CmoCh06G003160Melon (DHL92) v3.6.1cmomedB849
CmoCh06G003160Melon (DHL92) v3.6.1cmomedB868
CmoCh06G003160Silver-seed gourdcarcmoB0227
CmoCh06G003160Silver-seed gourdcarcmoB0640
CmoCh06G003160Silver-seed gourdcarcmoB1248
CmoCh06G003160Silver-seed gourdcarcmoB1343
CmoCh06G003160Cucumber (Chinese Long) v3cmocucB0954
CmoCh06G003160Cucumber (Chinese Long) v3cmocucB0973
CmoCh06G003160Watermelon (97103) v2cmowmbB818
CmoCh06G003160Watermelon (97103) v2cmowmbB828
CmoCh06G003160Watermelon (97103) v2cmowmbB831
CmoCh06G003160Wax gourdcmowgoB0983
CmoCh06G003160Wax gourdcmowgoB1026
CmoCh06G003160Wax gourdcmowgoB1029
CmoCh06G003160Cucurbita moschata (Rifu)cmocmoB222
CmoCh06G003160Cucurbita moschata (Rifu)cmocmoB422
CmoCh06G003160Cucurbita moschata (Rifu)cmocmoB436
CmoCh06G003160Cucurbita moschata (Rifu)cmocmoB453
CmoCh06G003160Cucurbita moschata (Rifu)cmocmoB483
CmoCh06G003160Cucumber (Gy14) v1cgycmoB0101
CmoCh06G003160Cucumber (Gy14) v1cgycmoB0507