CmoCh06G002940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G002940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMyb-like DNA-binding domain containing protein, expressed
LocationCmo_Chr06 : 1463039 .. 1463671 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTTCCAATGGAGGCTTTCTTCAAACTGATTCATCAACGCCACCACCATCTCTTCCTCCATGGCTTTCAAACTCCAACAGCAGCTCATCGCTCCGACCGCCTTCCCCGTCCGTCACCTTAACACTCTCATCCCCCACAGTTCCAGCCTACTCTCCAATCCCCTGGCTGCAGCAGCCAGAGAGAATCCCAGAAACCATGCCTCTTGTGTTGGGCAACATAGCACCTCAAATGACCATGCCATCGTGTGGCGGAAGCCTCTTTGCTTCAGAGCTCGTCGAATGCTGCCGAGAGCTCGATGAGGGCCACCGTGCTTGGGCATCACACAAGAAGGAAACGGCATGGAGGTTAAGGAGACAGGAGCTGCAATTGGAATCAGAGAAGGCGTCCCGAATTCGACAAAAGATGGAGGAGGTCGAAGGGAAAGTGAAGGCTGTTAGAGAAGAAGAGAAGATTGCTTTGGAGAGGATTGAAGCTGAGTATAAGGAGCAATTGGCTGGGTTGAGGAAAGATGCAGAGGCCAAAGAACAGAAGTTAGCTGAGCAATGGGCTGCAAAACACTTGAGCCTCACCAAGTTTCTTGAACACATGGGTTGCAGAACTAAAATTTCAGAGTCCAGTGGGAGGTGA

mRNA sequence

ATGGCCACTTCCAATGGAGGCTTTCTTCAAACTGATTCATCAACGCCACCACCATCTCTTCCTCCATGGCTTTCAAACTCCAACAGCAGCTCATCGCTCCGACCGCCTTCCCCGTCCGTCACCTTAACACTCTCATCCCCCACAGTTCCAGCCTACTCTCCAATCCCCTGGCTGCAGCAGCCAGAGAGAATCCCAGAAACCATGCCTCTTGTGTTGGGCAACATAGCACCTCAAATGACCATGCCATCGTGTGGCGGAAGCCTCTTTGCTTCAGAGCTCGTCGAATGCTGCCGAGAGCTCGATGAGGGCCACCGTGCTTGGGCATCACACAAGAAGGAAACGGCATGGAGGTTAAGGAGACAGGAGCTGCAATTGGAATCAGAGAAGGCGTCCCGAATTCGACAAAAGATGGAGGAGGTCGAAGGGAAAGTGAAGGCTGTTAGAGAAGAAGAGAAGATTGCTTTGGAGAGGATTGAAGCTGAGTATAAGGAGCAATTGGCTGGGTTGAGGAAAGATGCAGAGGCCAAAGAACAGAAGTTAGCTGAGCAATGGGCTGCAAAACACTTGAGCCTCACCAAGTTTCTTGAACACATGGGTTGCAGAACTAAAATTTCAGAGTCCAGTGGGAGGTGA

Coding sequence (CDS)

ATGGCCACTTCCAATGGAGGCTTTCTTCAAACTGATTCATCAACGCCACCACCATCTCTTCCTCCATGGCTTTCAAACTCCAACAGCAGCTCATCGCTCCGACCGCCTTCCCCGTCCGTCACCTTAACACTCTCATCCCCCACAGTTCCAGCCTACTCTCCAATCCCCTGGCTGCAGCAGCCAGAGAGAATCCCAGAAACCATGCCTCTTGTGTTGGGCAACATAGCACCTCAAATGACCATGCCATCGTGTGGCGGAAGCCTCTTTGCTTCAGAGCTCGTCGAATGCTGCCGAGAGCTCGATGAGGGCCACCGTGCTTGGGCATCACACAAGAAGGAAACGGCATGGAGGTTAAGGAGACAGGAGCTGCAATTGGAATCAGAGAAGGCGTCCCGAATTCGACAAAAGATGGAGGAGGTCGAAGGGAAAGTGAAGGCTGTTAGAGAAGAAGAGAAGATTGCTTTGGAGAGGATTGAAGCTGAGTATAAGGAGCAATTGGCTGGGTTGAGGAAAGATGCAGAGGCCAAAGAACAGAAGTTAGCTGAGCAATGGGCTGCAAAACACTTGAGCCTCACCAAGTTTCTTGAACACATGGGTTGCAGAACTAAAATTTCAGAGTCCAGTGGGAGGTGA
Homology
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BLAST of CmoCh06G002940 vs. Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-56
Identity = 133/214 (62.15%), Postives = 161/214 (75.23%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPS--LPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSP---I 60
           MA SNGGFL ++    PP+  +PPWL+ SN+ +++    PSVTLTLS  TV A +P   I
Sbjct: 156 MANSNGGFLHSEQQVQPPNPVIPPWLATSNNGNNVVARPPSVTLTLSPSTVAAAAPQPPI 215

Query: 61  PWLQQ--PERIPETMP--LVLGNIAPQMTMPSCGGS---LFASELVECCRELDEGHRAWA 120
           PWLQQ  PER  E  P  LVLG++     MPSC GS   +F SELVECCREL+EGHRAWA
Sbjct: 216 PWLQQQQPERA-ENGPGGLVLGSM-----MPSCSGSSESVFLSELVECCRELEEGHRAWA 275

Query: 121 SHKKETAWRLRRQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAG 180
            HKKE AWRLRR ELQLESEK  R R+KMEE+E K+KA+REE+K A+E+IE EY+EQL G
Sbjct: 276 DHKKEAAWRLRRLELQLESEKTCRQREKMEEIEAKMKALREEQKNAMEKIEGEYREQLVG 335

Query: 181 LRKDAEAKEQKLAEQWAAKHLSLTKFLE-HMGCR 202
           LR+DAEAK+QKLA+QW ++H+ LTKFLE  MGCR
Sbjct: 336 LRRDAEAKDQKLADQWTSRHIRLTKFLEQQMGCR 363

[Close]
BLAST of CmoCh06G002940 vs. Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-38
Identity = 97/188 (51.60%), Postives = 127/188 (67.55%), Query Frame = 1 

Query: 18  PSLPPWLSNSNSSSSLRPPSPSVTLTLSSPTV---PAYSPIPWLQQPERIPETMPLVLGN 77
           P LPPW+S+S SSSS    SPSVTL+L+S  V   PA  P  W               G 
Sbjct: 163 PILPPWMSSSPSSSS----SPSVTLSLASAAVAPAPAAPPPTW---------------GG 222

Query: 78  IAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRRQELQLESEKASRIR 137
                     GG +  +EL+ECCRE++EG RAWA+H+KE AWR++R E+QLE+E+A R R
Sbjct: 223 --------GGGGEVVVAELMECCREMEEGQRAWAAHRKEAAWRMKRVEMQLETERACRRR 282

Query: 138 QKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKLAEQWAAKHLSLTKF 197
           +  EE E K++A+REE+  A+ER+EAEY+E++AGLR+DAEAKEQK+AEQWAAKH  L KF
Sbjct: 283 EATEEFEAKMRALREEQAAAVERVEAEYREKMAGLRRDAEAKEQKMAEQWAAKHARLAKF 323

Query: 198 LEHM-GCR 202
           L+ +  CR
Sbjct: 343 LDQVAACR 323

[Close]
BLAST of CmoCh06G002940 vs. Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 89/199 (44.72%), Postives = 121/199 (60.80%), Query Frame = 1 

Query: 18  PSLPPWLSNSNSSSSL----------RPPSPSVTLTLSSPTVPAYSPIPWLQQPERIPET 77
           P LPPWLS++   ++           RPPSPSVTL+L+S  V    P P    P+R    
Sbjct: 160 PVLPPWLSSNAGPAAAAAAAVAHPPPRPPSPSVTLSLASAAVAPGPPAPAPWMPDRAAAD 219

Query: 78  M-------PLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRR 137
                   P   G  AP       G +L  +EL ECCREL+EG RAWA+H++E AWRL+R
Sbjct: 220 AAPYGFPSPSQHGGAAPPGMAVVDGQAL--AELAECCRELEEGRRAWAAHRREAAWRLKR 279

Query: 138 QELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKL 197
            E QLE E+  R R+  EE E K++ +R E+  A ER+E +++E++A LR+DA+ KE+K+
Sbjct: 280 VEQQLEMEREMRRREVWEEFEAKMRTMRLEQAAAAERVERDHREKVAELRRDAQVKEEKM 339

Query: 198 AEQWAAKHLSLTKFLEHMG 200
           AEQWAAKH  + KF+E MG
Sbjct: 340 AEQWAAKHARVAKFVEQMG 356

[Close]
BLAST of CmoCh06G002940 vs. TrEMBL
Match: A0A0A0LAJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G734210 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 1.8e-101
Identity = 194/210 (92.38%), Postives = 204/210 (97.14%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQQ 60
           MATSNGGFLQTDSST PPSLPPWLSNSN  SSLRPPSPSVTLTLSSPTVPAY+PIPWLQQ
Sbjct: 1   MATSNGGFLQTDSSTSPPSLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQQ 60

Query: 61  PERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRR 120
           P+R+PE MPLVLGN+APQM+MPSCGGSLFASELVECCRELDEGHRAWA+HKKETAWRLRR
Sbjct: 61  PDRMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLRR 120

Query: 121 QELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKL 180
           QELQLESEKASRIR KMEEVEGKVKA+REEEKIALERIEAEYKEQLAG RKDAEAKEQKL
Sbjct: 121 QELQLESEKASRIRLKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQKL 180

Query: 181 AEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           AEQWAAKH+SLTKFLEHMGCRT+I+ESSGR
Sbjct: 181 AEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

[Close]
BLAST of CmoCh06G002940 vs. TrEMBL
Match: D1LXI9_9ROSI (Myb family transcription factor OS=Castanea mollissima PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 147/211 (69.67%), Postives = 176/211 (83.41%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSL-PPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFL +D   P P+L PPWLSNSN +S++RPPSPSVTL+LS  TV A  PIPWLQ
Sbjct: 148 MATSNGGFLHSDPPGPAPALLPPWLSNSNGTSTVRPPSPSVTLSLSPSTVAAPPPIPWLQ 207

Query: 61  QPERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLR 120
            P+R P+  PLV GN+ PQ ++P CG S+  SELVECCR+L+EGH AWA+HKKE AWRL+
Sbjct: 208 -PDRGPDNNPLVFGNLQPQGSVPGCGESMLISELVECCRDLEEGHHAWAAHKKEAAWRLK 267

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           R ELQLESEKA R R+KMEE+E KVKA+REE+K+AL+RIEAEY+EQL GLR+DAEAKEQK
Sbjct: 268 RVELQLESEKACRRREKMEEIEAKVKALREEQKVALDRIEAEYREQLVGLRRDAEAKEQK 327

Query: 181 LAEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           LAEQW +KHL L+KFLE MGCR ++SE +GR
Sbjct: 328 LAEQWTSKHLRLSKFLEQMGCRPRLSEPNGR 357

[Close]
BLAST of CmoCh06G002940 vs. TrEMBL
Match: A0A061ER46_THECC (Myb-like HTH transcriptional regulator family protein isoform 1 OS=Theobroma cacao GN=TCM_021932 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.0e-71
Identity = 148/211 (70.14%), Postives = 174/211 (82.46%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPS-LPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFL TD  +P P+ LPPWLSNS+++ ++RPPSPSVTLTLS  TV A  PIPWL 
Sbjct: 148 MATSNGGFLHTDPPSPAPTLLPPWLSNSSTAPAVRPPSPSVTLTLSPSTVTAAPPIPWL- 207

Query: 61  QPERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLR 120
           QPER+ E  P+VLGN+ P  ++P CG +   SELVECCREL+EG RAW +HKKE AWRLR
Sbjct: 208 QPERMSENTPVVLGNMVPYGSIPPCGENPLVSELVECCRELEEGQRAWVAHKKEAAWRLR 267

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           R ELQLESEKA R R+KMEE+E KVKA+REE+K  L+RIEAEY+EQL GLR+DAEAKEQK
Sbjct: 268 RVELQLESEKACRRREKMEEIESKVKALREEQKATLDRIEAEYREQLEGLRRDAEAKEQK 327

Query: 181 LAEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           LAEQWAAKHL LTKFLE MGCR +++E +GR
Sbjct: 328 LAEQWAAKHLRLTKFLEQMGCRPRLTEPNGR 357

[Close]
BLAST of CmoCh06G002940 vs. TrEMBL
Match: V4STM5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012089mg PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 5.7e-71
Identity = 149/210 (70.95%), Postives = 176/210 (83.81%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQQ 60
           MATSNGGFL TD +TPP  LPPWLSNS  SS++RPPSPSVTL+LS  TV A  PIPWLQ 
Sbjct: 145 MATSNGGFLHTDPATPPNLLPPWLSNS--SSNIRPPSPSVTLSLSPSTVAAAPPIPWLQ- 204

Query: 61  PERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRR 120
           PER  +   LVLGN+ P  ++P CG +L  SEL+ECCREL+EGHRAWA+HKKE AWRLRR
Sbjct: 205 PERGSDNT-LVLGNMPPHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRR 264

Query: 121 QELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKL 180
            ELQLESEKA R R+KMEE+E K+KA+R+E++  L+RIEAEY+EQ+AGLR+DAEAKEQKL
Sbjct: 265 VELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKL 324

Query: 181 AEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           AEQW+AKHL LTKFLE MGCR ++SES+GR
Sbjct: 325 AEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350

[Close]
BLAST of CmoCh06G002940 vs. TrEMBL
Match: A0A067EJR4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018768mg PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.9e-70
Identity = 148/210 (70.48%), Postives = 175/210 (83.33%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQQ 60
           MATSNGGFL TD +TPP  LPPWLSNS  SS++RPPSPSVTL+LS  TV A  PIPWLQ 
Sbjct: 145 MATSNGGFLHTDPATPPNLLPPWLSNS--SSNIRPPSPSVTLSLSPSTVAAAPPIPWLQ- 204

Query: 61  PERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRR 120
           PER  +   LVLGN+    ++P CG +L  SEL+ECCREL+EGHRAWA+HKKE AWRLRR
Sbjct: 205 PERGSDNT-LVLGNMPTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRR 264

Query: 121 QELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKL 180
            ELQLESEKA R R+KMEE+E K+KA+R+E++  L+RIEAEY+EQ+AGLR+DAEAKEQKL
Sbjct: 265 VELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKL 324

Query: 181 AEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           AEQW+AKHL LTKFLE MGCR ++SES+GR
Sbjct: 325 AEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350

[Close]
BLAST of CmoCh06G002940 vs. TAIR10
Match: AT2G37630.1 (AT2G37630.1 myb-like HTH transcriptional regulator family protein)

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-58
Identity = 133/214 (62.15%), Postives = 161/214 (75.23%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPS--LPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSP---I 60
           MA SNGGFL ++    PP+  +PPWL+ SN+ +++    PSVTLTLS  TV A +P   I
Sbjct: 156 MANSNGGFLHSEQQVQPPNPVIPPWLATSNNGNNVVARPPSVTLTLSPSTVAAAAPQPPI 215

Query: 61  PWLQQ--PERIPETMP--LVLGNIAPQMTMPSCGGS---LFASELVECCRELDEGHRAWA 120
           PWLQQ  PER  E  P  LVLG++     MPSC GS   +F SELVECCREL+EGHRAWA
Sbjct: 216 PWLQQQQPERA-ENGPGGLVLGSM-----MPSCSGSSESVFLSELVECCRELEEGHRAWA 275

Query: 121 SHKKETAWRLRRQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAG 180
            HKKE AWRLRR ELQLESEK  R R+KMEE+E K+KA+REE+K A+E+IE EY+EQL G
Sbjct: 276 DHKKEAAWRLRRLELQLESEKTCRQREKMEEIEAKMKALREEQKNAMEKIEGEYREQLVG 335

Query: 181 LRKDAEAKEQKLAEQWAAKHLSLTKFLE-HMGCR 202
           LR+DAEAK+QKLA+QW ++H+ LTKFLE  MGCR
Sbjct: 336 LRRDAEAKDQKLADQWTSRHIRLTKFLEQQMGCR 363

[Close]
BLAST of CmoCh06G002940 vs. NCBI nr
Match: gi|659083792|ref|XP_008442545.1| (PREDICTED: transcription factor AS1 [Cucumis melo])

HSP 1 Score: 380.9 bits (977), Expect = 1.4e-102
Identity = 195/210 (92.86%), Postives = 206/210 (98.10%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQQ 60
           MATSNGGFLQTDSSTPPPSLPPWLSNSN  SSLRPPSPSVTLTLSSPTVPAY+PIPWLQQ
Sbjct: 1   MATSNGGFLQTDSSTPPPSLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQQ 60

Query: 61  PERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRR 120
           P+R+PE +PLVLGN+APQM+MPSCGGSLFASELVECCRELDEGHRAWA+HKKETAWRLRR
Sbjct: 61  PDRMPENIPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLRR 120

Query: 121 QELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKL 180
           QELQLESEKASRIRQKMEEVEGKVKA+REEEKIALERIEAEYKEQLAG RKDAEAKEQKL
Sbjct: 121 QELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQKL 180

Query: 181 AEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           AEQWAAKH+SLTKFLEHMGCRT+I+ESSGR
Sbjct: 181 AEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

[Close]
BLAST of CmoCh06G002940 vs. NCBI nr
Match: gi|449440030|ref|XP_004137788.1| (PREDICTED: transcription factor AS1 [Cucumis sativus])

HSP 1 Score: 376.7 bits (966), Expect = 2.6e-101
Identity = 194/210 (92.38%), Postives = 204/210 (97.14%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQQ 60
           MATSNGGFLQTDSST PPSLPPWLSNSN  SSLRPPSPSVTLTLSSPTVPAY+PIPWLQQ
Sbjct: 1   MATSNGGFLQTDSSTSPPSLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQQ 60

Query: 61  PERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRR 120
           P+R+PE MPLVLGN+APQM+MPSCGGSLFASELVECCRELDEGHRAWA+HKKETAWRLRR
Sbjct: 61  PDRMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLRR 120

Query: 121 QELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKL 180
           QELQLESEKASRIR KMEEVEGKVKA+REEEKIALERIEAEYKEQLAG RKDAEAKEQKL
Sbjct: 121 QELQLESEKASRIRLKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQKL 180

Query: 181 AEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           AEQWAAKH+SLTKFLEHMGCRT+I+ESSGR
Sbjct: 181 AEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

[Close]
BLAST of CmoCh06G002940 vs. NCBI nr
Match: gi|262410511|gb|ACY66803.1| (myb family transcription factor [Castanea mollissima])

HSP 1 Score: 280.0 bits (715), Expect = 3.3e-72
Identity = 147/211 (69.67%), Postives = 176/211 (83.41%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSL-PPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFL +D   P P+L PPWLSNSN +S++RPPSPSVTL+LS  TV A  PIPWLQ
Sbjct: 148 MATSNGGFLHSDPPGPAPALLPPWLSNSNGTSTVRPPSPSVTLSLSPSTVAAPPPIPWLQ 207

Query: 61  QPERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLR 120
            P+R P+  PLV GN+ PQ ++P CG S+  SELVECCR+L+EGH AWA+HKKE AWRL+
Sbjct: 208 -PDRGPDNNPLVFGNLQPQGSVPGCGESMLISELVECCRDLEEGHHAWAAHKKEAAWRLK 267

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           R ELQLESEKA R R+KMEE+E KVKA+REE+K+AL+RIEAEY+EQL GLR+DAEAKEQK
Sbjct: 268 RVELQLESEKACRRREKMEEIEAKVKALREEQKVALDRIEAEYREQLVGLRRDAEAKEQK 327

Query: 181 LAEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           LAEQW +KHL L+KFLE MGCR ++SE +GR
Sbjct: 328 LAEQWTSKHLRLSKFLEQMGCRPRLSEPNGR 357

[Close]
BLAST of CmoCh06G002940 vs. NCBI nr
Match: gi|590629535|ref|XP_007027017.1| (Myb-like HTH transcriptional regulator family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 276.9 bits (707), Expect = 2.8e-71
Identity = 148/211 (70.14%), Postives = 174/211 (82.46%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPS-LPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFL TD  +P P+ LPPWLSNS+++ ++RPPSPSVTLTLS  TV A  PIPWL 
Sbjct: 148 MATSNGGFLHTDPPSPAPTLLPPWLSNSSTAPAVRPPSPSVTLTLSPSTVTAAPPIPWL- 207

Query: 61  QPERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLR 120
           QPER+ E  P+VLGN+ P  ++P CG +   SELVECCREL+EG RAW +HKKE AWRLR
Sbjct: 208 QPERMSENTPVVLGNMVPYGSIPPCGENPLVSELVECCRELEEGQRAWVAHKKEAAWRLR 267

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           R ELQLESEKA R R+KMEE+E KVKA+REE+K  L+RIEAEY+EQL GLR+DAEAKEQK
Sbjct: 268 RVELQLESEKACRRREKMEEIESKVKALREEQKATLDRIEAEYREQLEGLRRDAEAKEQK 327

Query: 181 LAEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           LAEQWAAKHL LTKFLE MGCR +++E +GR
Sbjct: 328 LAEQWAAKHLRLTKFLEQMGCRPRLTEPNGR 357

[Close]
BLAST of CmoCh06G002940 vs. NCBI nr
Match: gi|567873001|ref|XP_006429090.1| (hypothetical protein CICLE_v10012089mg [Citrus clementina])

HSP 1 Score: 275.4 bits (703), Expect = 8.2e-71
Identity = 149/210 (70.95%), Postives = 176/210 (83.81%), Query Frame = 1 

Query: 1   MATSNGGFLQTDSSTPPPSLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQQ 60
           MATSNGGFL TD +TPP  LPPWLSNS  SS++RPPSPSVTL+LS  TV A  PIPWLQ 
Sbjct: 145 MATSNGGFLHTDPATPPNLLPPWLSNS--SSNIRPPSPSVTLSLSPSTVAAAPPIPWLQ- 204

Query: 61  PERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLRR 120
           PER  +   LVLGN+ P  ++P CG +L  SEL+ECCREL+EGHRAWA+HKKE AWRLRR
Sbjct: 205 PERGSDNT-LVLGNMPPHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRR 264

Query: 121 QELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQKL 180
            ELQLESEKA R R+KMEE+E K+KA+R+E++  L+RIEAEY+EQ+AGLR+DAEAKEQKL
Sbjct: 265 VELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKL 324

Query: 181 AEQWAAKHLSLTKFLEHMGCRTKISESSGR 211
           AEQW+AKHL LTKFLE MGCR ++SES+GR
Sbjct: 325 AEQWSAKHLRLTKFLEQMGCRPRLSESNGR 350

The following BLAST results are available for this feature:
BLAST of CmoCh06G002940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AS1_ARATH1.2e-5662.15Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1[more]
RS2_ORYSJ3.2e-3851.60Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1[more]
RS2_MAIZE3.4e-3244.72Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1[more]
BLAST of CmoCh06G002940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAJ9_CUCSA1.8e-10192.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G734210 PE=4 SV=1[more]
D1LXI9_9ROSI2.3e-7269.67Myb family transcription factor OS=Castanea mollissima PE=2 SV=1[more]
A0A061ER46_THECC2.0e-7170.14Myb-like HTH transcriptional regulator family protein isoform 1 OS=Theobroma cac... [more]
V4STM5_9ROSI5.7e-7170.95Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012089mg PE=4 SV=1[more]
A0A067EJR4_CITSI4.9e-7070.48Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018768mg PE=4 SV=1[more]
BLAST of CmoCh06G002940 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37630.16.5e-5862.15 myb-like HTH transcriptional regulator family protein[more]
BLAST of CmoCh06G002940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083792|ref|XP_008442545.1|1.4e-10292.86PREDICTED: transcription factor AS1 [Cucumis melo][more]
gi|449440030|ref|XP_004137788.1|2.6e-10192.38PREDICTED: transcription factor AS1 [Cucumis sativus][more]
gi|262410511|gb|ACY66803.1|3.3e-7269.67myb family transcription factor [Castanea mollissima][more]
gi|590629535|ref|XP_007027017.1|2.8e-7170.14Myb-like HTH transcriptional regulator family protein isoform 1 [Theobroma cacao... [more]
gi|567873001|ref|XP_006429090.1|8.2e-7170.95hypothetical protein CICLE_v10012089mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0010338leaf formation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008356 asymmetric cell division
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0010338 leaf formation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0045088 regulation of innate immune response
biological_process GO:0009615 response to virus
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000793 condensed chromosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G002940.1CmoCh06G002940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 159..183
score: -coord: 120..157
scor
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 1..162
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G002940Cucsa.175480Cucumber (Gy14) v1cgycmoB0507
CmoCh06G002940CmaCh14G001450Cucurbita maxima (Rimu)cmacmoB268
CmoCh06G002940CmaCh06G002950Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G002940Cla017900Watermelon (97103) v1cmowmB782
CmoCh06G002940Csa3G734210Cucumber (Chinese Long) v2cmocuB807
CmoCh06G002940MELO3C009255Melon (DHL92) v3.5.1cmomeB747
CmoCh06G002940ClCG10G021170Watermelon (Charleston Gray)cmowcgB729
CmoCh06G002940CSPI03G32290Wild cucumber (PI 183967)cmocpiB815
CmoCh06G002940Lsi03G021130Bottle gourd (USVL1VR-Ls)cmolsiB747
CmoCh06G002940Cp4.1LG03g02590Cucurbita pepo (Zucchini)cmocpeB783
CmoCh06G002940Cp4.1LG08g11720Cucurbita pepo (Zucchini)cmocpeB797
CmoCh06G002940MELO3C030739.2Melon (DHL92) v3.6.1cmomedB849
CmoCh06G002940CsaV3_3G034870Cucumber (Chinese Long) v3cmocucB0954
CmoCh06G002940Cla97C10G204380Watermelon (97103) v2cmowmbB818
CmoCh06G002940Bhi11G001876Wax gourdcmowgoB0983
CmoCh06G002940CsGy3G030120Cucumber (Gy14) v2cgybcmoB402
CmoCh06G002940Carg12545Silver-seed gourdcarcmoB1343
CmoCh06G002940Carg01052Silver-seed gourdcarcmoB0227
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G002940Cucurbita maxima (Rimu)cmacmoB568
CmoCh06G002940Cucurbita maxima (Rimu)cmacmoB624
CmoCh06G002940Cucurbita maxima (Rimu)cmacmoB664
CmoCh06G002940Cucurbita maxima (Rimu)cmacmoB873
CmoCh06G002940Wild cucumber (PI 183967)cmocpiB811
CmoCh06G002940Wild cucumber (PI 183967)cmocpiB834
CmoCh06G002940Wild cucumber (PI 183967)cmocpiB841
CmoCh06G002940Cucumber (Chinese Long) v2cmocuB804
CmoCh06G002940Cucumber (Chinese Long) v2cmocuB825
CmoCh06G002940Cucumber (Chinese Long) v2cmocuB831
CmoCh06G002940Melon (DHL92) v3.5.1cmomeB741
CmoCh06G002940Melon (DHL92) v3.5.1cmomeB764
CmoCh06G002940Watermelon (Charleston Gray)cmowcgB738
CmoCh06G002940Watermelon (Charleston Gray)cmowcgB742
CmoCh06G002940Watermelon (97103) v1cmowmB797
CmoCh06G002940Watermelon (97103) v1cmowmB798
CmoCh06G002940Cucurbita pepo (Zucchini)cmocpeB763
CmoCh06G002940Cucurbita pepo (Zucchini)cmocpeB775
CmoCh06G002940Cucurbita pepo (Zucchini)cmocpeB782
CmoCh06G002940Cucurbita pepo (Zucchini)cmocpeB793
CmoCh06G002940Bottle gourd (USVL1VR-Ls)cmolsiB738
CmoCh06G002940Bottle gourd (USVL1VR-Ls)cmolsiB739
CmoCh06G002940Bottle gourd (USVL1VR-Ls)cmolsiB743
CmoCh06G002940Bottle gourd (USVL1VR-Ls)cmolsiB751
CmoCh06G002940Cucumber (Gy14) v2cgybcmoB536
CmoCh06G002940Cucumber (Gy14) v2cgybcmoB677
CmoCh06G002940Cucumber (Gy14) v2cgybcmoB838
CmoCh06G002940Melon (DHL92) v3.6.1cmomedB843
CmoCh06G002940Melon (DHL92) v3.6.1cmomedB868
CmoCh06G002940Silver-seed gourdcarcmoB1248
CmoCh06G002940Cucumber (Chinese Long) v3cmocucB0973
CmoCh06G002940Cucumber (Chinese Long) v3cmocucB0977
CmoCh06G002940Cucumber (Chinese Long) v3cmocucB0983
CmoCh06G002940Watermelon (97103) v2cmowmbB828
CmoCh06G002940Watermelon (97103) v2cmowmbB831
CmoCh06G002940Watermelon (97103) v2cmowmbB843
CmoCh06G002940Wax gourdcmowgoB1026
CmoCh06G002940Cucurbita moschata (Rifu)cmocmoB189
CmoCh06G002940Cucurbita moschata (Rifu)cmocmoB222
CmoCh06G002940Cucurbita moschata (Rifu)cmocmoB375
CmoCh06G002940Cucurbita moschata (Rifu)cmocmoB422
CmoCh06G002940Cucurbita moschata (Rifu)cmocmoB436
CmoCh06G002940Cucurbita moschata (Rifu)cmocmoB453
CmoCh06G002940Cucurbita moschata (Rifu)cmocmoB483
CmoCh06G002940Cucumber (Gy14) v1cgycmoB0101