CmoCh06G001220 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G001220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SCF ubiquitin ligase, SKP1 component
Location	Cmo_Chr06 : 683231 .. 684465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAATCTATAAAAGCGGCGCGAGAACTCCACAGTCTCAAACTTCTCTTCTTCATCCTCTTCACAAAAATCACAATCAATCGATCTTCGTTCTCTCAGCAAAACCATGTCCTCTTCCAAGAAGATCGTTCTCAAGAGCTCCGATGGCGACACTTTTGAAATCGACGAGGCGGCCGCCCTCCAGTCACAGGCCATCCGCCACATGATCGAGGACGATTGTGCCGATAACGTCATCCCTCTTCCAAATGTCACCAGCAAGATCCTCGCCAAGGTTATCGAGTACTGCCGCAAGCACGTCGATGCTTCCTCCTCCGATCCTCCGCTCTCTGAACAAGATCTAAATGCCTGGGACCGGGACTTCGCTGATGTTGATCAGGCCACACTTTTCGATCTCCTTCTGGTAACTTTTCTTTCCTCCCGCTTTTAGATCCATCAACTCGGTTGTTTACGGTTTTGATTCTTCGTTGATTTTCTAGGGTTTACCTGTTTGGTATGATTTTGTTTTCAAGAATCAACTCTGAATCTTGAATTGAGCAAACCACTTGCGTTGATCTTCCTTGTCGCTGGTTACCGTTCTTTATCTGACGTATCTGTATTGACGCCTGTGCAGTTGTGCTAATAGGATAGTCATGGCCTTTATCGTTACCTTGTCGTCTTGATTTCATTTTCAGCGGTCTTATTTTTCTGGTGTTATCTAGGCGTCATTATCAAATGATTGTTGCTTAGGTTAATGCGTAAAAGTCATAGATAGACATGATTTCTTTTATGGTTCTGTATGTTAACAGCTTTAATTTATCGAGTTCTACATTCACCCATCGTTTATGTTCTTGATGCAAAGAATTTCAGCTGCCAGGGGATTTGACCATTATCGTCATTCATTTTTATCCTACCCTGCAGGCTGCAAATTATCTGAGCATCAATAGCCTGTTAGACCTGACATGCCGAACAGTAGCTAACATGTTCAGGGGAAAGACTCCAGAGGAGGTCAGAAAGACCTTCAACATCAAGAATGACTTCACACCGGAGGAAGAGGCGGAAATTCGTAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCCCATAAGAGTGCCCAAGGATCTTGATCAATATGATGGTTGTTCTGTACATGGTTCTGTATAAACATTTCTTTTTGGTTCTTTTGGGGTGTATTCAATCACTCCGTTGGTATTCACATTGTTTGAACCTCATCATAATTGTACAAACTTTTTTTTT

mRNA sequence

CAAGAATCTATAAAAGCGGCGCGAGAACTCCACAGTCTCAAACTTCTCTTCTTCATCCTCTTCACAAAAATCACAATCAATCGATCTTCGTTCTCTCAGCAAAACCATGTCCTCTTCCAAGAAGATCGTTCTCAAGAGCTCCGATGGCGACACTTTTGAAATCGACGAGGCGGCCGCCCTCCAGTCACAGGCCATCCGCCACATGATCGAGGACGATTGTGCCGATAACGTCATCCCTCTTCCAAATGTCACCAGCAAGATCCTCGCCAAGGTTATCGAGTACTGCCGCAAGCACGTCGATGCTTCCTCCTCCGATCCTCCGCTCTCTGAACAAGATCTAAATGCCTGGGACCGGGACTTCGCTGATGTTGATCAGGCCACACTTTTCGATCTCCTTCTGGCTGCAAATTATCTGAGCATCAATAGCCTGTTAGACCTGACATGCCGAACAGTAGCTAACATGTTCAGGGGAAAGACTCCAGAGGAGGTCAGAAAGACCTTCAACATCAAGAATGACTTCACACCGGAGGAAGAGGCGGAAATTCGTAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCCCATAAGAGTGCCCAAGGATCTTGATCAATATGATGGTTGTTCTGTACATGGTTCTGTATAAACATTTCTTTTTGGTTCTTTTGGGGTGTATTCAATCACTCCGTTGGTATTCACATTGTTTGAACCTCATCATAATTGTACAAACTTTTTTTTT

Coding sequence (CDS)

ATGTCCTCTTCCAAGAAGATCGTTCTCAAGAGCTCCGATGGCGACACTTTTGAAATCGACGAGGCGGCCGCCCTCCAGTCACAGGCCATCCGCCACATGATCGAGGACGATTGTGCCGATAACGTCATCCCTCTTCCAAATGTCACCAGCAAGATCCTCGCCAAGGTTATCGAGTACTGCCGCAAGCACGTCGATGCTTCCTCCTCCGATCCTCCGCTCTCTGAACAAGATCTAAATGCCTGGGACCGGGACTTCGCTGATGTTGATCAGGCCACACTTTTCGATCTCCTTCTGGCTGCAAATTATCTGAGCATCAATAGCCTGTTAGACCTGACATGCCGAACAGTAGCTAACATGTTCAGGGGAAAGACTCCAGAGGAGGTCAGAAAGACCTTCAACATCAAGAATGACTTCACACCGGAGGAAGAGGCGGAAATTCGTAGGGAGAATCAGTGGGCTTTTGAATGA

Homology

[Close]

BLAST of CmoCh06G001220 vs. Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.8e-59
Identity = 111/159 (69.81%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           S+KKIVLKSSDG++FE++EA AL+SQ I HM+EDDC DN +PLPNVTSKILAKVIEYC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSSDPPL------SEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTV 122
           HV+A++S          S+ DL AWD DF  +DQATLF+L+LAANYL+I +LLDLTC+TV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           A+M +GKTPEE+R TFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmoCh06G001220 vs. Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-58
Identity = 112/171 (65.50%), Postives = 132/171 (77.19%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MS+ +KI LKSSDG+ FEIDEA AL+SQ I+HMIEDDC DN IPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDASSSDPPL----------------SEQDLNAWDRDFADVDQATLFDLLLAANYLS 120
           ++HV+A+                      S++DL  WD +F  VDQ TLFDL+LAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 INSLLDLTCRTVANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           I  LLDLTC+TVA+M +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmoCh06G001220 vs. Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-53
Identity = 103/154 (66.88%), Postives = 128/154 (83.12%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  H-VDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
           H VD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SLLDLTC+TVA+M +
Sbjct: 62  HHVDEAN---PISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmoCh06G001220 vs. Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.3e-53
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
            HVD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SL DLTC+TVA+M +
Sbjct: 62  YHVDEAN---PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmoCh06G001220 vs. Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.8e-52
Identity = 101/160 (63.12%), Postives = 124/160 (77.50%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           + K I+LKSSDG++FEI+EA A++SQ I+HMIEDDCADN IPLPNVT  ILAKVIEYC+K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDASSSDP-------PLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRT 122
           HV+A++               +L  WD +F  VDQ TLFDL+LAANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           VA+  RGKTPE++R  FNIKND+TPEEEAE+R EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CmoCh06G001220 vs. TrEMBL
Match: A0A0L9TCJ7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan499s004000 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.5e-63
Identity = 121/155 (78.06%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS++KI LKSSDG+ FE+DEA AL+SQ I+HMIEDDCAD+ IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSARKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           +KHVDA++ D   SE+DL AWD DF  VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  KKHVDAANPDDKPSEEDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh06G001220 vs. TrEMBL
Match: M5VRC8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012752mg PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.5e-63
Identity = 121/154 (78.57%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 2   SSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCR 61
           SSSKKI LKSSDG++FE++EA AL+SQ I+HMIEDDCADN IPLPNVTSKILAKVIEYC+
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 121
           KHVDA+  D  +SE DL AWD+DF  VDQATLFDL+LAANYL+I  LLDLTC+TVA+M +
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKLLLDLTCQTVADMIK 122

Query: 122 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CmoCh06G001220 vs. TrEMBL
Match: T2DMS9_PHAVU (SKP1-like protein OS=Phaseolus vulgaris GN=PHAVU_002G106100g PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.5e-63
Identity = 121/155 (78.06%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS++KI LKSSDG+ FE+DEA AL+SQ I+HMIEDDCAD+ IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSARKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           +KHVDA++ D   SE+DL AWD DF  VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  KKHVDAANPDDKPSEEDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh06G001220 vs. TrEMBL
Match: A0A0S3T440_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G149400 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.5e-63
Identity = 121/155 (78.06%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS++KI LKSSDG+ FE+DEA AL+SQ I+HMIEDDCAD+ IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSARKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           +KHVDA++ D   SE+DL AWD DF  VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  KKHVDAANPDDKPSEEDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh06G001220 vs. TrEMBL
Match: A0A151THT0_CAJCA (SKP1-like protein 1B OS=Cajanus cajan GN=KK1_012913 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.9e-63
Identity = 121/155 (78.06%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS+KKI LKSSDG+ FE++EA AL+SQ I+HMIEDDCAD+ IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSAKKITLKSSDGEAFEVEEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           +KHVDA++ D   SE+DL AWD DF  VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  KKHVDAANPDDKPSEEDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh06G001220 vs. TAIR10
Match: AT1G75950.1 (AT1G75950.1 S phase kinase-associated protein 1)

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-60
Identity = 111/159 (69.81%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           S+KKIVLKSSDG++FE++EA AL+SQ I HM+EDDC DN +PLPNVTSKILAKVIEYC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSSDPPL------SEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTV 122
           HV+A++S          S+ DL AWD DF  +DQATLF+L+LAANYL+I +LLDLTC+TV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           A+M +GKTPEE+R TFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmoCh06G001220 vs. TAIR10
Match: AT5G42190.1 (AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 225.3 bits (573), Expect = 2.5e-59
Identity = 112/171 (65.50%), Postives = 132/171 (77.19%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MS+ +KI LKSSDG+ FEIDEA AL+SQ I+HMIEDDC DN IPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDASSSDPPL----------------SEQDLNAWDRDFADVDQATLFDLLLAANYLS 120
           ++HV+A+                      S++DL  WD +F  VDQ TLFDL+LAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 INSLLDLTCRTVANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           I  LLDLTC+TVA+M +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmoCh06G001220 vs. TAIR10
Match: AT4G34210.1 (AT4G34210.1 SKP1-like 11)

HSP 1 Score: 210.3 bits (534), Expect = 8.5e-55
Identity = 103/154 (66.88%), Postives = 128/154 (83.12%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  H-VDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
           H VD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SLLDLTC+TVA+M +
Sbjct: 62  HHVDEAN---PISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmoCh06G001220 vs. TAIR10
Match: AT4G34470.1 (AT4G34470.1 SKP1-like 12)

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-54
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
            HVD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SL DLTC+TVA+M +
Sbjct: 62  YHVDEAN---PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmoCh06G001220 vs. TAIR10
Match: AT1G20140.1 (AT1G20140.1 SKP1-like 4)

HSP 1 Score: 205.3 bits (521), Expect = 2.7e-53
Identity = 101/160 (63.12%), Postives = 124/160 (77.50%), Query Frame = 1


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           + K I+LKSSDG++FEI+EA A++SQ I+HMIEDDCADN IPLPNVT  ILAKVIEYC+K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDASSSDP-------PLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRT 122
           HV+A++               +L  WD +F  VDQ TLFDL+LAANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           VA+  RGKTPE++R  FNIKND+TPEEEAE+R EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CmoCh06G001220 vs. NCBI nr
Match: gi|659095328|ref|XP_008448523.1| (PREDICTED: SKP1-like protein 1B [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 4.2e-64
Identity = 126/155 (81.29%), Postives = 135/155 (87.10%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKI LKSSDGD FE+D A ALQSQ IRHMIED CADN IPLPNV SKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHV+ASS DP  S  DL  WDRDF +VDQATLFDL+LAANYL I SLLDLTC+TVA+M 
Sbjct: 61  RKHVNASSLDPAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh06G001220 vs. NCBI nr
Match: gi|502161436|ref|XP_004512164.1| (PREDICTED: SKP1-like protein 1A [Cicer arietinum])

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-63
Identity = 122/155 (78.71%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS+KKI LKSSDG+ FE+DEA AL+SQ I+HMIEDDCAD+ IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSTKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           +KHV+A+SSD   +E DL AWD DF  VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  KKHVEAASSDDKPTEDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh06G001220 vs. NCBI nr
Match: gi|595808032|ref|XP_007202708.1| (hypothetical protein PRUPE_ppa012752mg [Prunus persica])

HSP 1 Score: 250.4 bits (638), Expect = 2.1e-63
Identity = 121/154 (78.57%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 2   SSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCR 61
           SSSKKI LKSSDG++FE++EA AL+SQ I+HMIEDDCADN IPLPNVTSKILAKVIEYC+
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 121
           KHVDA+  D  +SE DL AWD+DF  VDQATLFDL+LAANYL+I  LLDLTC+TVA+M +
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKLLLDLTCQTVADMIK 122

Query: 122 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CmoCh06G001220 vs. NCBI nr
Match: gi|593789690|ref|XP_007157884.1| (hypothetical protein PHAVU_002G106100g [Phaseolus vulgaris])

HSP 1 Score: 250.4 bits (638), Expect = 2.1e-63
Identity = 121/155 (78.06%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS++KI LKSSDG+ FE+DEA AL+SQ I+HMIEDDCAD+ IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSARKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           +KHVDA++ D   SE+DL AWD DF  VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  KKHVDAANPDDKPSEEDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh06G001220 vs. NCBI nr
Match: gi|1012355428|gb|KYP66615.1| (SKP1-like protein 1B [Cajanus cajan])

HSP 1 Score: 250.0 bits (637), Expect = 2.7e-63
Identity = 121/155 (78.06%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS+KKI LKSSDG+ FE++EA AL+SQ I+HMIEDDCAD+ IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSAKKITLKSSDGEAFEVEEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           +KHVDA++ D   SE+DL AWD DF  VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  KKHVDAANPDDKPSEEDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

The following BLAST results are available for this feature:

BLAST of CmoCh06G001220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKP1A_ARATH	1.8e-59	69.81	SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1	[more]
SKP1B_ARATH	4.5e-58	65.50	SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1	[more]
ASK11_ARATH	1.5e-53	66.88	SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1	[more]
ASK12_ARATH	3.3e-53	66.23	SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1	[more]
ASK4_ARATH	4.8e-52	63.13	SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1	[more]

BLAST of CmoCh06G001220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9TCJ7_PHAAN	1.5e-63	78.06	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan499s004000 PE=3 SV=1	[more]
M5VRC8_PRUPE	1.5e-63	78.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012752mg PE=3 SV=1	[more]
T2DMS9_PHAVU	1.5e-63	78.06	SKP1-like protein OS=Phaseolus vulgaris GN=PHAVU_002G106100g PE=2 SV=1	[more]
A0A0S3T440_PHAAN	1.5e-63	78.06	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G149400 PE=...	[more]
A0A151THT0_CAJCA	1.9e-63	78.06	SKP1-like protein 1B OS=Cajanus cajan GN=KK1_012913 PE=3 SV=1	[more]

BLAST of CmoCh06G001220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75950.1	1.0e-60	69.81	S phase kinase-associated protein 1	[more]
AT5G42190.1	2.5e-59	65.50	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	8.5e-55	66.88	SKP1-like 11	[more]
AT4G34470.1	1.9e-54	66.23	SKP1-like 12	[more]
AT1G20140.1	2.7e-53	63.13	SKP1-like 4	[more]

BLAST of CmoCh06G001220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095328\|ref\|XP_008448523.1\|	4.2e-64	81.29	PREDICTED: SKP1-like protein 1B [Cucumis melo]	[more]
gi\|502161436\|ref\|XP_004512164.1\|	1.2e-63	78.71	PREDICTED: SKP1-like protein 1A [Cicer arietinum]	[more]
gi\|595808032\|ref\|XP_007202708.1\|	2.1e-63	78.57	hypothetical protein PRUPE_ppa012752mg [Prunus persica]	[more]
gi\|593789690\|ref\|XP_007157884.1\|	2.1e-63	78.06	hypothetical protein PHAVU_002G106100g [Phaseolus vulgaris]	[more]
gi\|1012355428\|gb\|KYP66615.1\|	2.7e-63	78.06	SKP1-like protein 1B [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001232	SKP1-like
IPR011333	SKP1/BTB/POZ_sf
IPR016072	Skp1_comp_dimer
IPR016073	Skp1_comp_POZ
IPR016897	SKP1

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G001220.1	CmoCh06G001220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 score: 2.5
IPR011333	SKP1/BTB/POZ domain	unknown	SSF54695	POZ domain	coord: 6..66 score: 4.19
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 score: 4.4
IPR016072	SKP1 component, dimerisation	unknown	SSF81382	Skp1 dimerisation domain-like	coord: 78..153 score: 3.4
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 score: 2.4
IPR016897	S-phase kinase-associated protein 1	PIR	PIRSF028729	SCF_Skp	coord: 1..155 score: 6.1
None	No IPR available	GENE3D	G3DSA:3.30.710.10		coord: 2..155 score: 1.6
None	No IPR available	PANTHER	PTHR11165	SKP1	coord: 1..155 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G001220	Cucsa.322790	Cucumber (Gy14) v1	cgycmoB0894
CmoCh06G001220	CmaCh16G012490	Cucurbita maxima (Rimu)	cmacmoB342
CmoCh06G001220	CmaCh06G001290	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G001220	Cla008915	Watermelon (97103) v1	cmowmB775
CmoCh06G001220	Csa3G002630	Cucumber (Chinese Long) v2	cmocuB817
CmoCh06G001220	MELO3C013750	Melon (DHL92) v3.5.1	cmomeB757
CmoCh06G001220	ClCG10G000540	Watermelon (Charleston Gray)	cmowcgB731
CmoCh06G001220	CSPI03G00580	Wild cucumber (PI 183967)	cmocpiB825
CmoCh06G001220	Lsi07G010860	Bottle gourd (USVL1VR-Ls)	cmolsiB767
CmoCh06G001220	Cp4.1LG14g10300	Cucurbita pepo (Zucchini)	cmocpeB769
CmoCh06G001220	Cp4.1LG08g13040	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G001220	MELO3C013750.2	Melon (DHL92) v3.6.1	cmomedB862
CmoCh06G001220	CsaV3_3G000620	Cucumber (Chinese Long) v3	cmocucB0963
CmoCh06G001220	Cla97C10G185110	Watermelon (97103) v2	cmowmbB820
CmoCh06G001220	CsGy3G000540	Cucumber (Gy14) v2	cgybcmoB411
CmoCh06G001220	Carg19462	Silver-seed gourd	carcmoB0583
CmoCh06G001220	Carg01202	Silver-seed gourd	carcmoB0227

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G001220	CmoCh16G012970	Cucurbita moschata (Rifu)	cmocmoB292

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G001220	Wax gourd	cmowgoB0987