CmoCh06G001170 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGAAAGTAAAGGAAGGAATGGGGGAGGCGTTTTCGAACGAAAGGGAGTCGAAGAAATTGAAGAGGAGAAGGCGGGCGAAGGGCTCTTCTGGGAAGTATTTGAAGCCTGGTGCTCTGTCGAAGCTGCGGTGCAGCAAGGGCTCGGTTGGTAAATCTTGTACTTATCTTGGAAGGAAGAGGGTGGCTGTGTTGGATGCTGGGAAGACTAAGAGGAATAATGCGGGGCTTGAGGACAAGGTTTCTGATAGAAGTCCTTTGATGTTGTCGCCTGTCAAGTTGGTGATGCATATAAATCATATTAGTACCCCAAGAACTCCTCGAGTTGAAAGCTGCGAATCAGAGTCACGGCTGGAATCTCTGCCTATGGATCTATTGGTATTGTTAATATTCATCTAATTCTTTTCTGATTCCTAGAACATAACGTGTTCATCTCAAAATTAAATCAAATGCATAAAACCCAACTTATTCCGTTTTCTTTACCGATTGTATGATCTTCTTTTGCTTGCATTCTTTTTAAGCTATGATCTGTGACTAGAAATATTTGTTCCTTTAATGGATCATGGATTTTCAATGGGGTTTTAGTGTCAAAACCAATGTTTTATGATTCATTTCACTTTGCGAAGATAATGTAATGACCAACTTTTAGTAAAAAGGCCAAAGCCTTTCTAGCTGTTACTTTCTAAATTATCAACTTAGAAAACCCAAGTTCTTTTGATCTTGAAGAACATGTTTGATCACGCATATAGATTTGAGTAATCATGTTGATCTGATCTAGATATGCGCTCAGATTTTGAATTGTTGATGGGTATTAATTTTATGATCTTGTGTCTTAAATTTGTAACTTGAAGGTGAAAGTACTTTGCCATTTGCACCACGACCAACTGAGGGCTGTATTCCATGTCTCTCAACGGATCAGAAAAGCTGTAAGTCTTTGTTTCTGTCTGCCTAAAACGCATCACATTTGTTTGAGATTGATGATCATGACCCTCTATTGAACAGGTTTTGATGGCGAGGCAGTTCCACTTTAATTACACAACCCCAGATCGATCCAGGCAGGAGATGTTGAGAACAACCACCCCTCGACCCACTGAACACTGGCCCTTTGTAAGGTTGGTATTCATTGTTCATGTTTATTTGGACTGGTGAAGGCATATGCTGTTGCTGAACTGGAAATAAATTTTATATTGGGCAGCAAGGGAGATGGAAAAGGCTTTTCATTGCCAAGCCCCCACACTCCGAAAGCGCCAAGACACGGTCCTCGACCGCCATCTCGTCTGAAAGTTTCAGAGATGAGACAGGTTGCTGCTGTTCTGTTTCAAGAAACAGGTTTTCCTTCAAGATGCATGGTTCCCTCTGTTATACCTAAGCCACTCTGCAAATCCCTGGCTTCGAACCGGGTTCTGTTCTACGAGGAGGAGTTGTGCCAAGCTGTTGCTCAAAATAAACTTCGTTGATTGATGTAGTTGGCAATTTCTCGTTGTCTGTTGTTTTTGTGTATATAGGATTTGTGTTGTTGCCTGTAGCAGGTTGGTTTGTTGAGCCAATATAGGAATTCTACAAATTTTGTAGCTGCGTTTGATGCAGATTAGGGGTATCATGGAAGTTCTTGTTCTGTTGGAATGAGGGTTTTAATGATTGATTCAGACTGTAGCTGTGGGAATAATCTATTCCAAACTGGTTACTTGTATAGTTCTATATATATATCTTCTAAAGAGTGGTTTTCTGCTACTTCTCTTTTTATGGTTTATGCAACTATTATGTCCTCCAATTGCTTCAAATCAATG ATGGGGAAAGTAAAGGAAGGAATGGGGGAGGCGTTTTCGAACGAAAGGGAGTCGAAGAAATTGAAGAGGAGAAGGCGGGCGAAGGGCTCTTCTGGGAAGTATTTGAAGCCTGGTGCTCTGTCGAAGCTGCGGTGCAGCAAGGGCTCGGTTGGTAAATCTTGTACTTATCTTGGAAGGAAGAGGGTGGCTGTGTTGGATGCTGGGAAGACTAAGAGGAATAATGCGGGGCTTGAGGACAAGGTTTCTGATAGAAGTCCTTTGATGTTGTCGCCTGTCAAGTTGGTGATGCATATAAATCATATTAGTACCCCAAGAACTCCTCGAGTTGAAAGCTGCGAATCAGAGTCACGGCTGGAATCTCTGCCTATGGATCTATTGGTGAAAGTACTTTGCCATTTGCACCACGACCAACTGAGGGCTGTATTCCATGTCTCTCAACGGATCAGAAAAGCTGTTTTGATGGCGAGGCAGTTCCACTTTAATTACACAACCCCAGATCGATCCAGGCAGGAGATGTTGAGAACAACCACCCCTCGACCCACTGAACACTGGCCCTTTGTAAGCAAGGGAGATGGAAAAGGCTTTTCATTGCCAAGCCCCCACACTCCGAAAGCGCCAAGACACGGTCCTCGACCGCCATCTCGTCTGAAAGTTTCAGAGATGAGACAGGTTGCTGCTGTTCTGTTTCAAGAAACAGGTTTTCCTTCAAGATGCATGGTTCCCTCTGTTATACCTAAGCCACTCTGCAAATCCCTGGCTTCGAACCGGGTTCTGTTCTACGAGGAGGAGTTGTGCCAAGCTGTTGCTCAAAATAAACTTCGTTGATTGATGTAGTTGGCAATTTCTCGTTGTCTGTTGTTTTTGTGTATATAGGATTTGTGTTGTTGCCTGTAGCAGGTTGGTTTGTTGAGCCAATATAGGAATTCTACAAATTTTGTAGCTGCGTTTGATGCAGATTAGGGGTATCATGGAAGTTCTTGTTCTGTTGGAATGAGGGTTTTAATGATTGATTCAGACTGTAGCTGTGGGAATAATCTATTCCAAACTGGTTACTTGTATAGTTCTATATATATATCTTCTAAAGAGTGGTTTTCTGCTACTTCTCTTTTTATGGTTTATGCAACTATTATGTCCTCCAATTGCTTCAAATCAATG ATGGGGAAAGTAAAGGAAGGAATGGGGGAGGCGTTTTCGAACGAAAGGGAGTCGAAGAAATTGAAGAGGAGAAGGCGGGCGAAGGGCTCTTCTGGGAAGTATTTGAAGCCTGGTGCTCTGTCGAAGCTGCGGTGCAGCAAGGGCTCGGTTGGTAAATCTTGTACTTATCTTGGAAGGAAGAGGGTGGCTGTGTTGGATGCTGGGAAGACTAAGAGGAATAATGCGGGGCTTGAGGACAAGGTTTCTGATAGAAGTCCTTTGATGTTGTCGCCTGTCAAGTTGGTGATGCATATAAATCATATTAGTACCCCAAGAACTCCTCGAGTTGAAAGCTGCGAATCAGAGTCACGGCTGGAATCTCTGCCTATGGATCTATTGGTGAAAGTACTTTGCCATTTGCACCACGACCAACTGAGGGCTGTATTCCATGTCTCTCAACGGATCAGAAAAGCTGTTTTGATGGCGAGGCAGTTCCACTTTAATTACACAACCCCAGATCGATCCAGGCAGGAGATGTTGAGAACAACCACCCCTCGACCCACTGAACACTGGCCCTTTGTAAGCAAGGGAGATGGAAAAGGCTTTTCATTGCCAAGCCCCCACACTCCGAAAGCGCCAAGACACGGTCCTCGACCGCCATCTCGTCTGAAAGTTTCAGAGATGAGACAGGTTGCTGCTGTTCTGTTTCAAGAAACAGGTTTTCCTTCAAGATGCATGGTTCCCTCTGTTATACCTAAGCCACTCTGCAAATCCCTGGCTTCGAACCGGGTTCTGTTCTACGAGGAGGAGTTGTGCCAAGCTGTTGCTCAAAATAAACTTCGTTGA
BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 3.2e-67 Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 1
BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2) HSP 1 Score: 65.9 bits (159), Expect = 8.1e-10 Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 1
BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 8.9e-09 Identity = 27/57 (47.37%), Postives = 45/57 (78.95%), Query Frame = 1
BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 7.6e-08 Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A0A0L111_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002650 PE=4 SV=1) HSP 1 Score: 480.7 bits (1236), Expect = 1.2e-132 Identity = 242/267 (90.64%), Postives = 253/267 (94.76%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A061DGH5_THECC (F-box family protein OS=Theobroma cacao GN=TCM_000159 PE=4 SV=1) HSP 1 Score: 396.0 bits (1016), Expect = 3.8e-107 Identity = 200/267 (74.91%), Postives = 225/267 (84.27%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TrEMBL
Match: M5WA31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010075mg PE=4 SV=1) HSP 1 Score: 394.4 bits (1012), Expect = 1.1e-106 Identity = 202/266 (75.94%), Postives = 227/266 (85.34%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A067JJ36_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25374 PE=4 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 4.6e-105 Identity = 191/267 (71.54%), Postives = 225/267 (84.27%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A059AIG9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02473 PE=4 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 8.8e-104 Identity = 193/267 (72.28%), Postives = 231/267 (86.52%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TAIR10
Match: AT4G35930.1 (AT4G35930.1 F-box family protein) HSP 1 Score: 256.5 bits (654), Expect = 1.8e-68 Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TAIR10
Match: AT4G21510.1 (AT4G21510.1 F-box family protein) HSP 1 Score: 65.9 bits (159), Expect = 4.6e-11 Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TAIR10
Match: AT4G05010.1 (AT4G05010.1 F-box family protein) HSP 1 Score: 59.3 bits (142), Expect = 4.3e-09 Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
BLAST of CmoCh06G001170 vs. TAIR10
Match: AT1G61340.2 (AT1G61340.2 F-box family protein) HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06 Identity = 18/44 (40.91%), Postives = 35/44 (79.55%), Query Frame = 1
BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|449456835|ref|XP_004146154.1| (PREDICTED: F-box protein At4g35930 [Cucumis sativus]) HSP 1 Score: 480.7 bits (1236), Expect = 1.7e-132 Identity = 242/267 (90.64%), Postives = 253/267 (94.76%), Query Frame = 1
BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|659095332|ref|XP_008448525.1| (PREDICTED: F-box protein At4g35930 [Cucumis melo]) HSP 1 Score: 478.4 bits (1230), Expect = 8.4e-132 Identity = 240/267 (89.89%), Postives = 252/267 (94.38%), Query Frame = 1
BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|590702447|ref|XP_007046629.1| (F-box family protein [Theobroma cacao]) HSP 1 Score: 396.0 bits (1016), Expect = 5.5e-107 Identity = 200/267 (74.91%), Postives = 225/267 (84.27%), Query Frame = 1
BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|645273787|ref|XP_008242043.1| (PREDICTED: F-box protein At4g35930 [Prunus mume]) HSP 1 Score: 395.6 bits (1015), Expect = 7.1e-107 Identity = 203/266 (76.32%), Postives = 227/266 (85.34%), Query Frame = 1
BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|1009144351|ref|XP_015889751.1| (PREDICTED: F-box protein At4g35930 [Ziziphus jujuba]) HSP 1 Score: 395.6 bits (1015), Expect = 7.1e-107 Identity = 204/267 (76.40%), Postives = 225/267 (84.27%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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