CmoCh06G001170 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G001170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionF-box family protein
LocationCmo_Chr06 : 672468 .. 674254 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAAGTAAAGGAAGGAATGGGGGAGGCGTTTTCGAACGAAAGGGAGTCGAAGAAATTGAAGAGGAGAAGGCGGGCGAAGGGCTCTTCTGGGAAGTATTTGAAGCCTGGTGCTCTGTCGAAGCTGCGGTGCAGCAAGGGCTCGGTTGGTAAATCTTGTACTTATCTTGGAAGGAAGAGGGTGGCTGTGTTGGATGCTGGGAAGACTAAGAGGAATAATGCGGGGCTTGAGGACAAGGTTTCTGATAGAAGTCCTTTGATGTTGTCGCCTGTCAAGTTGGTGATGCATATAAATCATATTAGTACCCCAAGAACTCCTCGAGTTGAAAGCTGCGAATCAGAGTCACGGCTGGAATCTCTGCCTATGGATCTATTGGTATTGTTAATATTCATCTAATTCTTTTCTGATTCCTAGAACATAACGTGTTCATCTCAAAATTAAATCAAATGCATAAAACCCAACTTATTCCGTTTTCTTTACCGATTGTATGATCTTCTTTTGCTTGCATTCTTTTTAAGCTATGATCTGTGACTAGAAATATTTGTTCCTTTAATGGATCATGGATTTTCAATGGGGTTTTAGTGTCAAAACCAATGTTTTATGATTCATTTCACTTTGCGAAGATAATGTAATGACCAACTTTTAGTAAAAAGGCCAAAGCCTTTCTAGCTGTTACTTTCTAAATTATCAACTTAGAAAACCCAAGTTCTTTTGATCTTGAAGAACATGTTTGATCACGCATATAGATTTGAGTAATCATGTTGATCTGATCTAGATATGCGCTCAGATTTTGAATTGTTGATGGGTATTAATTTTATGATCTTGTGTCTTAAATTTGTAACTTGAAGGTGAAAGTACTTTGCCATTTGCACCACGACCAACTGAGGGCTGTATTCCATGTCTCTCAACGGATCAGAAAAGCTGTAAGTCTTTGTTTCTGTCTGCCTAAAACGCATCACATTTGTTTGAGATTGATGATCATGACCCTCTATTGAACAGGTTTTGATGGCGAGGCAGTTCCACTTTAATTACACAACCCCAGATCGATCCAGGCAGGAGATGTTGAGAACAACCACCCCTCGACCCACTGAACACTGGCCCTTTGTAAGGTTGGTATTCATTGTTCATGTTTATTTGGACTGGTGAAGGCATATGCTGTTGCTGAACTGGAAATAAATTTTATATTGGGCAGCAAGGGAGATGGAAAAGGCTTTTCATTGCCAAGCCCCCACACTCCGAAAGCGCCAAGACACGGTCCTCGACCGCCATCTCGTCTGAAAGTTTCAGAGATGAGACAGGTTGCTGCTGTTCTGTTTCAAGAAACAGGTTTTCCTTCAAGATGCATGGTTCCCTCTGTTATACCTAAGCCACTCTGCAAATCCCTGGCTTCGAACCGGGTTCTGTTCTACGAGGAGGAGTTGTGCCAAGCTGTTGCTCAAAATAAACTTCGTTGATTGATGTAGTTGGCAATTTCTCGTTGTCTGTTGTTTTTGTGTATATAGGATTTGTGTTGTTGCCTGTAGCAGGTTGGTTTGTTGAGCCAATATAGGAATTCTACAAATTTTGTAGCTGCGTTTGATGCAGATTAGGGGTATCATGGAAGTTCTTGTTCTGTTGGAATGAGGGTTTTAATGATTGATTCAGACTGTAGCTGTGGGAATAATCTATTCCAAACTGGTTACTTGTATAGTTCTATATATATATCTTCTAAAGAGTGGTTTTCTGCTACTTCTCTTTTTATGGTTTATGCAACTATTATGTCCTCCAATTGCTTCAAATCAATG

mRNA sequence

ATGGGGAAAGTAAAGGAAGGAATGGGGGAGGCGTTTTCGAACGAAAGGGAGTCGAAGAAATTGAAGAGGAGAAGGCGGGCGAAGGGCTCTTCTGGGAAGTATTTGAAGCCTGGTGCTCTGTCGAAGCTGCGGTGCAGCAAGGGCTCGGTTGGTAAATCTTGTACTTATCTTGGAAGGAAGAGGGTGGCTGTGTTGGATGCTGGGAAGACTAAGAGGAATAATGCGGGGCTTGAGGACAAGGTTTCTGATAGAAGTCCTTTGATGTTGTCGCCTGTCAAGTTGGTGATGCATATAAATCATATTAGTACCCCAAGAACTCCTCGAGTTGAAAGCTGCGAATCAGAGTCACGGCTGGAATCTCTGCCTATGGATCTATTGGTGAAAGTACTTTGCCATTTGCACCACGACCAACTGAGGGCTGTATTCCATGTCTCTCAACGGATCAGAAAAGCTGTTTTGATGGCGAGGCAGTTCCACTTTAATTACACAACCCCAGATCGATCCAGGCAGGAGATGTTGAGAACAACCACCCCTCGACCCACTGAACACTGGCCCTTTGTAAGCAAGGGAGATGGAAAAGGCTTTTCATTGCCAAGCCCCCACACTCCGAAAGCGCCAAGACACGGTCCTCGACCGCCATCTCGTCTGAAAGTTTCAGAGATGAGACAGGTTGCTGCTGTTCTGTTTCAAGAAACAGGTTTTCCTTCAAGATGCATGGTTCCCTCTGTTATACCTAAGCCACTCTGCAAATCCCTGGCTTCGAACCGGGTTCTGTTCTACGAGGAGGAGTTGTGCCAAGCTGTTGCTCAAAATAAACTTCGTTGATTGATGTAGTTGGCAATTTCTCGTTGTCTGTTGTTTTTGTGTATATAGGATTTGTGTTGTTGCCTGTAGCAGGTTGGTTTGTTGAGCCAATATAGGAATTCTACAAATTTTGTAGCTGCGTTTGATGCAGATTAGGGGTATCATGGAAGTTCTTGTTCTGTTGGAATGAGGGTTTTAATGATTGATTCAGACTGTAGCTGTGGGAATAATCTATTCCAAACTGGTTACTTGTATAGTTCTATATATATATCTTCTAAAGAGTGGTTTTCTGCTACTTCTCTTTTTATGGTTTATGCAACTATTATGTCCTCCAATTGCTTCAAATCAATG

Coding sequence (CDS)

ATGGGGAAAGTAAAGGAAGGAATGGGGGAGGCGTTTTCGAACGAAAGGGAGTCGAAGAAATTGAAGAGGAGAAGGCGGGCGAAGGGCTCTTCTGGGAAGTATTTGAAGCCTGGTGCTCTGTCGAAGCTGCGGTGCAGCAAGGGCTCGGTTGGTAAATCTTGTACTTATCTTGGAAGGAAGAGGGTGGCTGTGTTGGATGCTGGGAAGACTAAGAGGAATAATGCGGGGCTTGAGGACAAGGTTTCTGATAGAAGTCCTTTGATGTTGTCGCCTGTCAAGTTGGTGATGCATATAAATCATATTAGTACCCCAAGAACTCCTCGAGTTGAAAGCTGCGAATCAGAGTCACGGCTGGAATCTCTGCCTATGGATCTATTGGTGAAAGTACTTTGCCATTTGCACCACGACCAACTGAGGGCTGTATTCCATGTCTCTCAACGGATCAGAAAAGCTGTTTTGATGGCGAGGCAGTTCCACTTTAATTACACAACCCCAGATCGATCCAGGCAGGAGATGTTGAGAACAACCACCCCTCGACCCACTGAACACTGGCCCTTTGTAAGCAAGGGAGATGGAAAAGGCTTTTCATTGCCAAGCCCCCACACTCCGAAAGCGCCAAGACACGGTCCTCGACCGCCATCTCGTCTGAAAGTTTCAGAGATGAGACAGGTTGCTGCTGTTCTGTTTCAAGAAACAGGTTTTCCTTCAAGATGCATGGTTCCCTCTGTTATACCTAAGCCACTCTGCAAATCCCTGGCTTCGAACCGGGTTCTGTTCTACGAGGAGGAGTTGTGCCAAGCTGTTGCTCAAAATAAACTTCGTTGA
BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.2e-67
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 1

Query: 84  RSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLVKVLCHLHHDQLRAVFH 143
           +SPLMLSP+ +VM    + TP+TP+ + C SES+LESLPMDLLVK++CHLHHDQL+AVFH
Sbjct: 128 KSPLMLSPMGIVMQNTLLRTPKTPQADPCVSESQLESLPMDLLVKIVCHLHHDQLKAVFH 187

Query: 144 VSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFVSKGDGKGFSLPSPHTP 203
           VSQRIR A ++ARQ+HFNYTTPDRSRQEMLR  TP P   WPF  +GDG    + SPHTP
Sbjct: 188 VSQRIRMATILARQYHFNYTTPDRSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTP 247

Query: 204 KAPRHGPRPPSRLKVSEMRQVAAVLFQ-ETGFPSRCMVPSVIPKP-LCKSLASN--RVLF 263
           KAP+H PRPPSR K++EM+Q+ AVLFQ +T FPSRC+VPSV+ +P L K +A    RVLF
Sbjct: 248 KAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLF 307

Query: 264 YEEELCQAVAQNKL 274
           YE+ELCQAVAQN L
Sbjct: 308 YEDELCQAVAQNNL 320

BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-10
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 1

Query: 3   KVKEGMGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRV 62
           KV E   E    +R +  L +R     S+ ++   G   +L    GSV +    LGRKR+
Sbjct: 18  KVVEWFSENLFLKRSTMALSKRGFVMTSNARF--HGEEEELELGLGSV-RFTRGLGRKRI 77

Query: 63  AVLDAGKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESE-SRLESL 122
            +    +   + + +E  V   SP + S +K           R   V S  SE SRLE L
Sbjct: 78  LISSCVRESLSRSAVEIPVVSESPPVKSSLKR-------QRSRITIVSSSSSEKSRLECL 137

Query: 123 PMDLLVKVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSR 170
           P DLL++V+C + H+ L+++  VS+ IR+A L+A+  HF YTTP ++R
Sbjct: 138 PQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTR 175

BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.9e-09
Identity = 27/57 (47.37%), Postives = 45/57 (78.95%), Query Frame = 1

Query: 113 ESESR-LESLPMDLLVKVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRS 169
           E +SR LE LP+D+LV+++C + H+ L+ +FHVS+ IR+A ++A+Q HF Y+TP ++
Sbjct: 75  EGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKT 131

BLAST of CmoCh06G001170 vs. Swiss-Prot
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-08
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1

Query: 101 ISTPRTPRVESCESESRLESLPMDLLVKVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHF 160
           +  P     ESC S   LE+L  D+L++VLCH+ H+ L  +  VS+ IRKAV+ A++ HF
Sbjct: 49  VKRPSHETTESCRS--LLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHF 108

Query: 161 NYTTPDR 168
           +Y+TP +
Sbjct: 109 DYSTPKK 113

BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A0A0L111_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002650 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.2e-132
Identity = 242/267 (90.64%), Postives = 253/267 (94.76%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+ F+N+RE KKLKRRRR+KGS GKYLKPGAL+KLRCSKGSV KSCT LGRKRVAVLDA
Sbjct: 1   MGKVFTNDREPKKLKRRRRSKGSGGKYLKPGALAKLRCSKGSVAKSCTDLGRKRVAVLDA 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
           GKTKRN   LEDKVSDRSPLMLSPVKLVMHINHI TP+TPRVE CESESRLESLPMDLLV
Sbjct: 61  GKTKRNVV-LEDKVSDRSPLMLSPVKLVMHINHIGTPKTPRVEDCESESRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K+LCHLHHDQLRAVFHVSQRIRKAVL+ARQFHFNYTTPDRSRQEMLR TTPRPTEHWPFV
Sbjct: 121 KILCHLHHDQLRAVFHVSQRIRKAVLLARQFHFNYTTPDRSRQEMLRITTPRPTEHWPFV 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           +KGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQE+ FP RCMVPSVI KP
Sbjct: 181 NKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESAFPPRCMVPSVISKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           LCKSLASNRVLFYE+ELCQAVAQNKLR
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKLR 266

BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A061DGH5_THECC (F-box family protein OS=Theobroma cacao GN=TCM_000159 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 3.8e-107
Identity = 200/267 (74.91%), Postives = 225/267 (84.27%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+    +RE K  K+ RR K SS KYLKPG L++LR SK S  K CT LGRKRVAVLDA
Sbjct: 1   MGKVSPKDREFKTAKKNRRLKSSSSKYLKPGTLAQLRYSKASAAKLCTDLGRKRVAVLDA 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
            K + +N  +E+ V +RSPLMLSPV L    + + TP+TPR E  ESESRLESLPMDLLV
Sbjct: 61  KKPEDDNLLIENTVIERSPLMLSPVDLHKQNSMVRTPKTPRPEDFESESRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K+LCHLHHDQLRAVFHVSQRIRKAV +ARQFHFNYTTPDRSRQEML T TPRPTEHWPF+
Sbjct: 121 KILCHLHHDQLRAVFHVSQRIRKAVCLARQFHFNYTTPDRSRQEMLSTMTPRPTEHWPFM 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           SKGDGK   + SPHTPKAPRHGPRPPSR+KV+E+RQ+AAVLFQ++GFPSRCM+PSVIPKP
Sbjct: 181 SKGDGKSILMRSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSGFPSRCMIPSVIPKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           LCKSLASNRVLFYE+ELCQAVAQNKLR
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKLR 267

BLAST of CmoCh06G001170 vs. TrEMBL
Match: M5WA31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010075mg PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.1e-106
Identity = 202/266 (75.94%), Postives = 227/266 (85.34%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+    ER SKK K+++R +GS  KYLKPGAL++L+ SK S  KSCT LGRKRVAVL+ 
Sbjct: 1   MGKVSPKERNSKKAKQKKR-RGSGNKYLKPGALAQLKHSKTSSAKSCTDLGRKRVAVLET 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
            K K +   LED+  D+SPLMLSPV LV   + + TP+TPR E C SESRLESLPMDLLV
Sbjct: 61  KKVKGDMV-LEDRAIDKSPLMLSPVNLVRQNSLLKTPKTPRTEDCVSESRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           KVLCHLHHDQL+AVFHVSQR+RKAVL+ARQF+FNYTTPDRSRQEML T TP PTEHWPF+
Sbjct: 121 KVLCHLHHDQLKAVFHVSQRVRKAVLLARQFYFNYTTPDRSRQEMLNTMTPHPTEHWPFL 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           SKGDGKG  + SPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQE+ FP+RCMVPSV+PKP
Sbjct: 181 SKGDGKGIFIRSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESNFPTRCMVPSVLPKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKL 274
           LCKSLASNRVLFYE+ELCQAVAQNKL
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKL 264

BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A067JJ36_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25374 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 4.6e-105
Identity = 191/267 (71.54%), Postives = 225/267 (84.27%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+    +R+SK  K+RRR + SS +YLKPGAL++LR +K S  KSCT LG+KRVAV   
Sbjct: 1   MGKVSPKDRDSKTPKKRRRLRSSSSRYLKPGALAQLRYNKASATKSCTDLGKKRVAVFTT 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
            K + ++  +E+ V D+SPL+LSPV L+   + + TP+TPR E CESESRLESLP DLLV
Sbjct: 61  KKAEEDDLMIENNVIDKSPLLLSPVNLLKQTHLVRTPKTPRTEDCESESRLESLPTDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K+LCHLHHDQLR VFHVS+RIR+AVL+ARQFHFNYTTPDRSRQEMLRT TPRPTEHWPFV
Sbjct: 121 KILCHLHHDQLRPVFHVSRRIRRAVLLARQFHFNYTTPDRSRQEMLRTMTPRPTEHWPFV 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           SKG+GK   LPSPHTPKAPRHGPRPPSR+KV+EM+Q+AAVLFQ++ FP RCMVPS + KP
Sbjct: 181 SKGEGKAAFLPSPHTPKAPRHGPRPPSRIKVTEMKQIAAVLFQDSAFPPRCMVPSALSKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           LCKSLASNRVLFYE+ELCQAVAQNKLR
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKLR 267

BLAST of CmoCh06G001170 vs. TrEMBL
Match: A0A059AIG9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02473 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 8.8e-104
Identity = 193/267 (72.28%), Postives = 231/267 (86.52%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+    ERE+K  +++RR++ SS KYLKPGAL++LR S+GS  KSCT +G+KRVAV+DA
Sbjct: 1   MGKVSPKERETKGARQKRRSRSSSKKYLKPGALAQLRYSRGSGAKSCTDIGKKRVAVVDA 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
            K + ++  L+D+V ++SPL+LSPV LV   N + TP TPR   C++ESRLE+LP+DLLV
Sbjct: 61  KKAE-DDLILKDEVVEKSPLLLSPVNLVKQNNLLWTPNTPRDNDCKTESRLEALPIDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K++CHLHHDQLRAVFHVSQR+RKAVL+ARQFHFNYTTPDRSRQEMLRT TPRPTEHWPF 
Sbjct: 121 KIMCHLHHDQLRAVFHVSQRVRKAVLIARQFHFNYTTPDRSRQEMLRTMTPRPTEHWPF- 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
            +GDGKG  +PSPHTPKAPRHGPRPPSR+K++EMRQ+AAVLFQE+ FPSRCMVPSV+ KP
Sbjct: 181 KRGDGKGVFMPSPHTPKAPRHGPRPPSRIKLAEMRQIAAVLFQESTFPSRCMVPSVLTKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           LCKSLASNR LFYEEELCQAVAQNKLR
Sbjct: 241 LCKSLASNRALFYEEELCQAVAQNKLR 265

BLAST of CmoCh06G001170 vs. TAIR10
Match: AT4G35930.1 (AT4G35930.1 F-box family protein)

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-68
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 1

Query: 84  RSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLVKVLCHLHHDQLRAVFH 143
           +SPLMLSP+ +VM    + TP+TP+ + C SES+LESLPMDLLVK++CHLHHDQL+AVFH
Sbjct: 128 KSPLMLSPMGIVMQNTLLRTPKTPQADPCVSESQLESLPMDLLVKIVCHLHHDQLKAVFH 187

Query: 144 VSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFVSKGDGKGFSLPSPHTP 203
           VSQRIR A ++ARQ+HFNYTTPDRSRQEMLR  TP P   WPF  +GDG    + SPHTP
Sbjct: 188 VSQRIRMATILARQYHFNYTTPDRSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTP 247

Query: 204 KAPRHGPRPPSRLKVSEMRQVAAVLFQ-ETGFPSRCMVPSVIPKP-LCKSLASN--RVLF 263
           KAP+H PRPPSR K++EM+Q+ AVLFQ +T FPSRC+VPSV+ +P L K +A    RVLF
Sbjct: 248 KAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLF 307

Query: 264 YEEELCQAVAQNKL 274
           YE+ELCQAVAQN L
Sbjct: 308 YEDELCQAVAQNNL 320

BLAST of CmoCh06G001170 vs. TAIR10
Match: AT4G21510.1 (AT4G21510.1 F-box family protein)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-11
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 1

Query: 3   KVKEGMGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRV 62
           KV E   E    +R +  L +R     S+ ++   G   +L    GSV +    LGRKR+
Sbjct: 18  KVVEWFSENLFLKRSTMALSKRGFVMTSNARF--HGEEEELELGLGSV-RFTRGLGRKRI 77

Query: 63  AVLDAGKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESE-SRLESL 122
            +    +   + + +E  V   SP + S +K           R   V S  SE SRLE L
Sbjct: 78  LISSCVRESLSRSAVEIPVVSESPPVKSSLKR-------QRSRITIVSSSSSEKSRLECL 137

Query: 123 PMDLLVKVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSR 170
           P DLL++V+C + H+ L+++  VS+ IR+A L+A+  HF YTTP ++R
Sbjct: 138 PQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTR 175

BLAST of CmoCh06G001170 vs. TAIR10
Match: AT4G05010.1 (AT4G05010.1 F-box family protein)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-09
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1

Query: 101 ISTPRTPRVESCESESRLESLPMDLLVKVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHF 160
           +  P     ESC S   LE+L  D+L++VLCH+ H+ L  +  VS+ IRKAV+ A++ HF
Sbjct: 49  VKRPSHETTESCRS--LLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHF 108

Query: 161 NYTTPDR 168
           +Y+TP +
Sbjct: 109 DYSTPKK 113

BLAST of CmoCh06G001170 vs. TAIR10
Match: AT1G61340.2 (AT1G61340.2 F-box family protein)

HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06
Identity = 18/44 (40.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query: 125 LLVKVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRS 169
           ++V+++C + H+ L+ +FHVS+ IR+A ++A+Q HF Y+TP ++
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKT 177

BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|449456835|ref|XP_004146154.1| (PREDICTED: F-box protein At4g35930 [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.7e-132
Identity = 242/267 (90.64%), Postives = 253/267 (94.76%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+ F+N+RE KKLKRRRR+KGS GKYLKPGAL+KLRCSKGSV KSCT LGRKRVAVLDA
Sbjct: 1   MGKVFTNDREPKKLKRRRRSKGSGGKYLKPGALAKLRCSKGSVAKSCTDLGRKRVAVLDA 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
           GKTKRN   LEDKVSDRSPLMLSPVKLVMHINHI TP+TPRVE CESESRLESLPMDLLV
Sbjct: 61  GKTKRNVV-LEDKVSDRSPLMLSPVKLVMHINHIGTPKTPRVEDCESESRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K+LCHLHHDQLRAVFHVSQRIRKAVL+ARQFHFNYTTPDRSRQEMLR TTPRPTEHWPFV
Sbjct: 121 KILCHLHHDQLRAVFHVSQRIRKAVLLARQFHFNYTTPDRSRQEMLRITTPRPTEHWPFV 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           +KGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQE+ FP RCMVPSVI KP
Sbjct: 181 NKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESAFPPRCMVPSVISKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           LCKSLASNRVLFYE+ELCQAVAQNKLR
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKLR 266

BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|659095332|ref|XP_008448525.1| (PREDICTED: F-box protein At4g35930 [Cucumis melo])

HSP 1 Score: 478.4 bits (1230), Expect = 8.4e-132
Identity = 240/267 (89.89%), Postives = 252/267 (94.38%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+ F+N+RE KKLKRRRR+KGS GKYLKPGAL++LRCSKGSV KSCT LGRKRVAVLDA
Sbjct: 1   MGKVFTNDREPKKLKRRRRSKGSGGKYLKPGALAQLRCSKGSVAKSCTDLGRKRVAVLDA 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
           GK KRN   LEDKVSDRSPLMLSPVKLVMHINHI TP+TPRVE CESESRLESLPMDLLV
Sbjct: 61  GKAKRNGV-LEDKVSDRSPLMLSPVKLVMHINHIGTPKTPRVEDCESESRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K+LCHLHHDQLRAVFHVSQRIRKAVL+ARQFHFNYTTPDRSRQEMLR TTPRPTEHWPFV
Sbjct: 121 KILCHLHHDQLRAVFHVSQRIRKAVLLARQFHFNYTTPDRSRQEMLRITTPRPTEHWPFV 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           +KGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQE+ FP RCMVPSVI KP
Sbjct: 181 NKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESAFPPRCMVPSVISKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           LCKSLASNRVLFYE+ELCQAVAQNKLR
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKLR 266

BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|590702447|ref|XP_007046629.1| (F-box family protein [Theobroma cacao])

HSP 1 Score: 396.0 bits (1016), Expect = 5.5e-107
Identity = 200/267 (74.91%), Postives = 225/267 (84.27%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+    +RE K  K+ RR K SS KYLKPG L++LR SK S  K CT LGRKRVAVLDA
Sbjct: 1   MGKVSPKDREFKTAKKNRRLKSSSSKYLKPGTLAQLRYSKASAAKLCTDLGRKRVAVLDA 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
            K + +N  +E+ V +RSPLMLSPV L    + + TP+TPR E  ESESRLESLPMDLLV
Sbjct: 61  KKPEDDNLLIENTVIERSPLMLSPVDLHKQNSMVRTPKTPRPEDFESESRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K+LCHLHHDQLRAVFHVSQRIRKAV +ARQFHFNYTTPDRSRQEML T TPRPTEHWPF+
Sbjct: 121 KILCHLHHDQLRAVFHVSQRIRKAVCLARQFHFNYTTPDRSRQEMLSTMTPRPTEHWPFM 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           SKGDGK   + SPHTPKAPRHGPRPPSR+KV+E+RQ+AAVLFQ++GFPSRCM+PSVIPKP
Sbjct: 181 SKGDGKSILMRSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSGFPSRCMIPSVIPKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           LCKSLASNRVLFYE+ELCQAVAQNKLR
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKLR 267

BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|645273787|ref|XP_008242043.1| (PREDICTED: F-box protein At4g35930 [Prunus mume])

HSP 1 Score: 395.6 bits (1015), Expect = 7.1e-107
Identity = 203/266 (76.32%), Postives = 227/266 (85.34%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+    ER SKK K+++R +GS  KYLKPGAL++L+ SK S  KSCT LGRKRVAVL+ 
Sbjct: 1   MGKVSPKERNSKKAKQKKR-RGSGNKYLKPGALAQLKHSKTSSAKSCTDLGRKRVAVLET 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
            K K +   LED+  D+SPLMLSPV LV   + + TP+TPR E C SESRLESLPMDLLV
Sbjct: 61  KKVKGDMV-LEDRAIDKSPLMLSPVNLVRQNSLLKTPKTPRTEDCVSESRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           KVLCHLHHDQL+AVFHVSQR+RKAVL+ARQF+FNYTTPDRSRQEML T TP PTEHWPF+
Sbjct: 121 KVLCHLHHDQLKAVFHVSQRVRKAVLLARQFYFNYTTPDRSRQEMLNTMTPHPTEHWPFL 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           SKGDGKG  + SPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQE+ FPSRCMVPSV+PKP
Sbjct: 181 SKGDGKGIFIRSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESNFPSRCMVPSVLPKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKL 274
           LCKSLASNRVLFYE+ELCQAVAQNKL
Sbjct: 241 LCKSLASNRVLFYEDELCQAVAQNKL 264

BLAST of CmoCh06G001170 vs. NCBI nr
Match: gi|1009144351|ref|XP_015889751.1| (PREDICTED: F-box protein At4g35930 [Ziziphus jujuba])

HSP 1 Score: 395.6 bits (1015), Expect = 7.1e-107
Identity = 204/267 (76.40%), Postives = 225/267 (84.27%), Query Frame = 1

Query: 8   MGEAFSNERESKKLKRRRRAKGSSGKYLKPGALSKLRCSKGSVGKSCTYLGRKRVAVLDA 67
           MG+    +R  KK KR R   GSS KYLKPGAL++LR +K +  KSCT LGRKRVAV+D 
Sbjct: 1   MGKVSPKDRNPKKKKRLR---GSSNKYLKPGALAQLRYNKSTATKSCTDLGRKRVAVIDT 60

Query: 68  GKTKRNNAGLEDKVSDRSPLMLSPVKLVMHINHISTPRTPRVESCESESRLESLPMDLLV 127
            K   N+A LED + D+SPLMLSPV LV   + + TPRTPRVE C+S+SRLESLPMDLLV
Sbjct: 61  KKAN-NDAVLEDSIIDKSPLMLSPVNLVKQNSFVGTPRTPRVEDCDSDSRLESLPMDLLV 120

Query: 128 KVLCHLHHDQLRAVFHVSQRIRKAVLMARQFHFNYTTPDRSRQEMLRTTTPRPTEHWPFV 187
           K+LCHLHHDQLRAVFHVSQR+RKAVL+ARQFHFNYTTPDRSRQEMLRT TPRPTEHWPF 
Sbjct: 121 KILCHLHHDQLRAVFHVSQRVRKAVLLARQFHFNYTTPDRSRQEMLRTMTPRPTEHWPFP 180

Query: 188 SKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQETGFPSRCMVPSVIPKP 247
           SKGDGKG  +PSPHTPKAPR GPRPPSRLK SE+RQVAAVLFQE+   SRCMVPSV+PKP
Sbjct: 181 SKGDGKGIWMPSPHTPKAPRQGPRPPSRLKASEVRQVAAVLFQESALRSRCMVPSVLPKP 240

Query: 248 LCKSLASNRVLFYEEELCQAVAQNKLR 275
           L KSLASNRVLFYEEELCQAVAQNKLR
Sbjct: 241 LYKSLASNRVLFYEEELCQAVAQNKLR 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FB248_ARATH3.2e-6766.49F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1[more]
SKI27_ARATH8.1e-1033.33F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2[more]
FB316_ARATH8.9e-0947.37F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1[more]
FB220_ARATH7.6e-0843.28F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L111_CUCSA1.2e-13290.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002650 PE=4 SV=1[more]
A0A061DGH5_THECC3.8e-10774.91F-box family protein OS=Theobroma cacao GN=TCM_000159 PE=4 SV=1[more]
M5WA31_PRUPE1.1e-10675.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010075mg PE=4 SV=1[more]
A0A067JJ36_JATCU4.6e-10571.54Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25374 PE=4 SV=1[more]
A0A059AIG9_EUCGR8.8e-10472.28Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02473 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G35930.11.8e-6866.49 F-box family protein[more]
AT4G21510.14.6e-1133.33 F-box family protein[more]
AT4G05010.14.3e-0943.28 F-box family protein[more]
AT1G61340.25.8e-0640.91 F-box family protein[more]
Match NameE-valueIdentityDescription
gi|449456835|ref|XP_004146154.1|1.7e-13290.64PREDICTED: F-box protein At4g35930 [Cucumis sativus][more]
gi|659095332|ref|XP_008448525.1|8.4e-13289.89PREDICTED: F-box protein At4g35930 [Cucumis melo][more]
gi|590702447|ref|XP_007046629.1|5.5e-10774.91F-box family protein [Theobroma cacao][more]
gi|645273787|ref|XP_008242043.1|7.1e-10776.32PREDICTED: F-box protein At4g35930 [Prunus mume][more]
gi|1009144351|ref|XP_015889751.1|7.1e-10776.40PREDICTED: F-box protein At4g35930 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G001170.1CmoCh06G001170.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPROFILEPS50181FBOXcoord: 115..163
score: 8
IPR001810F-box domainunknownSSF81383F-box domaincoord: 107..184
score: 1.5
NoneNo IPR availableunknownCoilCoilcoord: 270..274
scor
NoneNo IPR availablePANTHERPTHR34049FAMILY NOT NAMEDcoord: 7..274
score: 3.5E
NoneNo IPR availablePANTHERPTHR34049:SF2SUBFAMILY NOT NAMEDcoord: 7..274
score: 3.5E