CmoCh06G001140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G001140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(3-dehydroquinate synthase) (4.2.3.4)
Location	Cmo_Chr06 : 648240 .. 650589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCTGGGCTGAGTTACATGCCGATGATAGCGAAGGTTTGGTCGAGATTTGGATCAATCGCTATCCGATTTATCTTGAATCCGATCTTCTCGATCAGCTTGGTACATGGACAGAAGTGAATTTGTTTGATTGGTCACTAGATTTTTTCCTAAATCGTGCATATTTTCTAATTTACTGTGATTTTACTGAATTTACAGGCATCTTCATGGGAGGAGAGTTCTAATAGTCTCAAATGATACTGTTGGACCATTGTATCTAGATAAAGTTACTGAAGCTCTAACCATTGGGAATCCGAATGTTTCAGTTGAAAGTGTAGTTTTACCAGATGGTGAAAAGTACAAAGATATGGTAAGTAATTCACATTAACATTCAAAGATTGTATGTATAAGAGATTGAAATGTAAAAAATTGCCTCTCCCTTTGGATAAACCTTGTTCCCTCCTAGAATTGAAACTAACCACAATCTTGATAGGACACACTCATGAAAGTCTTTGACAAGGCGATGTACGTTTGTCGCCCTTGGAGGTGGTGTCATTGGTGATATGTGGGGTTAACTTCATTCAGATTCCCACGACCGTTTTGGCACAAGTATGCTGCTGCCTTTCTGAAATGTGTTTTCTTGCTTTGTTTTAGCTTGAAATGAGCCTTTGTTCAACATGTCCTGTTCTTGTCTGTATGTTGTAGGTGGACTCTTCTGTTGGGGGAAAGACGGATAAATCATCCTCTGGGGAAGAACTTGATTGGCGCATTTTACCAGCCTCAATGTGTTGTTGTAGACACTGATACACTATATGCCCTGCCTGATAGGGAGCTAGCTTCTGGGTTTGCAGAGGTCATTAAGTATGGGCATATGCCTTCATTAATGGCAAGGTGTGTGCGTTATATGTTATTGCCTTATGTTCTGTGTGCTTCTATTTCCACTGAAACATATATATGGTTCGTTTTGGCTCGTTAGTATCGTTGTTAGGCTTACGGTTTTTAAAACACATATGTTAGGGAGAGATTTCCACACCCTTATAAGGAGTGTTTCCTCCCCTTCTTCAACCGATGTGGGATCTCACAATCCACCCCTTAAGAGTCCAGTGTTCTCGTCTGCACACCTCCCAGTGTCTGACTTTGATACCATTTGTAACCGCCCAAACCTAGTGCTAATAGATTGATCGTCTAAAACATCCTTATAAGTAGTGTTTCGTTTCTCTCTTCAATCAAGTGAGATCTCAGATCGTCTAAAACAGCACTACTAGAGCCAAAAGATTTGAGGTGTTAGTAGGTGACTGTGATACTAGTTTGGCTGTCATACTAATTTGATCATGTCCTGTTGGCTTGTTGTAGGGATCCAGCTGCCTTAGCTTATGCGATAAAACGTTCATGTGAGAACAAGGCAGAGGTTGTGACACACATTTGGACATGTAAGATGGGTTCACCCTTTCTTTTAATATGAAGCAATGAAAAATATATACTGTTGAAACTATACCGATTTCGGGTCATATCTCTTTCGTTGCCTTTCGTACTTCAATCCTTTCGTTGTCCTTGTACTGTAACATCCTTTCGTTGTCCTTGTACTATACAAATCTCTTTTTTCAGGTGAGGTCTAAACATATTCTGTAACATCCCAAGCTCATTGCTACCAGATATTGTCATTTTTGGACTTTCCCTTTCGAACTTCTCCTCAAAGTTTTTAAAACGTGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAAAATGCTTTATTTTCCTCCCGACGTGGGATATCACACCTACCTTGGCCAGTTCTTGCAAGTCTGCTTCTCATATGACTTTTTGCTCAAAAAATGTATCTTTTTTGTTCCTAAATCATGTGTTTGTCATGGAGTACCTTTGCTTTCTTATTAGCTTCTCATTATGTGCACTCTCCTATAGGCAATAGAAACTGGGTTTGGGTACGGTCAGTGGCTGCATGGACAAGATGTTGCCACGGTATTGCATCATTATGTTCAAATAGTATCTGCCATTCTACTCCATATATGCCAATTCTAAGTGTCATTCTGGTTGGGGCTTTCTTTGCCAATTTTCAGGCGGTAAGCGATTCACGGTTTTCCTCTACACCAACTTTGTGTTTTTGTGTCTCGGGTATATTGAGTGTTGTCGAGACGGCAGGTCGACGAGAAGGTTGCTAACGGGCTACTAAGACTAATTCTCTTGAAAGGTCCTCTAAGAAACTGCGTGTTCACCGGCGATTATGATCGGAAAGCGTTAGACGACACGATTCGTTGGTTTTGCAAGTCTCAGCAAGATTTAGGAGAGTATTCCAATCTGTGTGCAAGCTTTGTATCATATTGAAAATATATGCACAAGATAAATATAAA

mRNA sequence

ATGGTTTTCTGGGCTGAGTTACATGCCGATGATAGCGAAGGTTTGGTCGAGATTTGGATCAATCGCTATCCGATTTATCTTGAATCCGATCTTCTCGATCAGCTTGGTACATGGACAGAAGTGAATTTGCATCTTCATGGGAGGAGAGTTCTAATAGTCTCAAATGATACTGTTGGACCATTGTATCTAGATAAAGTTACTGAAGCTCTAACCATTGGGAATCCGAATGTTTCAGTTGAAAGCGATGTACGTTTGTCGCCCTTGGAGGTGGTGTCATTGGTGATATGTGGGGTTAACTTCATTCAGATTCCCACGACCGTTTTGGCACAAGTGGACTCTTCTGTTGGGGGAAAGACGGATAAATCATCCTCTGGGGAAGAACTTGATTGGCGCATTTTACCAGCCTCAATGGAGCTAGCTTCTGGGTTTGCAGAGGTCATTAAGTATGGGCATATGCCTTCATTAATGGCAAGGGATCCAGCTGCCTTAGCTTATGCGATAAAACGTTCATGTGAGAACAAGGCAGAGGCAATAGAAACTGGGTTTGGGTACGGTCAGTGGCTGCATGGACAAGATGTTGCCACGGTATTGCATCATTATGTTCAAATAGCGGTAAGCGATTCACGGTTTTCCTCTACACCAACTTTGTGTTTTTGTGTCTCGGGTATATTGAGTGTTGTCGAGACGGCAGGTCGACGAGAAGGTTGCTAACGGGCTACTAAGACTAATTCTCTTGAAAGGTCCTCTAAGAAACTGCGTGTTCACCGGCGATTATGATCGGAAAGCGTTAGACGACACGATTCGTTGGTTTTGCAAGTCTCAGCAAGATTTAGGAGAGTATTCCAATCTGTGTGCAAGCTTTGTATCATATTGAAAATATATGCACAAGATAAATATAAA

Coding sequence (CDS)

ATGGTTTTCTGGGCTGAGTTACATGCCGATGATAGCGAAGGTTTGGTCGAGATTTGGATCAATCGCTATCCGATTTATCTTGAATCCGATCTTCTCGATCAGCTTGGTACATGGACAGAAGTGAATTTGCATCTTCATGGGAGGAGAGTTCTAATAGTCTCAAATGATACTGTTGGACCATTGTATCTAGATAAAGTTACTGAAGCTCTAACCATTGGGAATCCGAATGTTTCAGTTGAAAGCGATGTACGTTTGTCGCCCTTGGAGGTGGTGTCATTGGTGATATGTGGGGTTAACTTCATTCAGATTCCCACGACCGTTTTGGCACAAGTGGACTCTTCTGTTGGGGGAAAGACGGATAAATCATCCTCTGGGGAAGAACTTGATTGGCGCATTTTACCAGCCTCAATGGAGCTAGCTTCTGGGTTTGCAGAGGTCATTAAGTATGGGCATATGCCTTCATTAATGGCAAGGGATCCAGCTGCCTTAGCTTATGCGATAAAACGTTCATGTGAGAACAAGGCAGAGGCAATAGAAACTGGGTTTGGGTACGGTCAGTGGCTGCATGGACAAGATGTTGCCACGGTATTGCATCATTATGTTCAAATAGCGGTAAGCGATTCACGGTTTTCCTCTACACCAACTTTGTGTTTTTGTGTCTCGGGTATATTGAGTGTTGTCGAGACGGCAGGTCGACGAGAAGGTTGCTAA

Homology

[Close]

BLAST of CmoCh06G001140 vs. Swiss-Prot
Match: DHQS_ARATH (3-dehydroquinate synthase, chloroplastic OS=Arabidopsis thaliana GN=DHQS PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.3e-34
Identity = 109/269 (40.52%), Postives = 135/269 (50.19%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ + LLD       +  H+HG+RVL+V+ND V PLYLDK  +ALT GNP
Sbjct: 83  VDLGDRSYPIYIGAGLLDHSEL---LQRHVHGKRVLVVTNDRVAPLYLDKTIDALTRGNP 142

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NV+VE                            D R + + +   VI   CG        
Sbjct: 143 NVTVESVILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 202

Query: 136 -VNFIQIPTTVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        E+AS
Sbjct: 203 GVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDREMAS 262

[Close]

BLAST of CmoCh06G001140 vs. Swiss-Prot
Match: DHQS_ACTCH (3-dehydroquinate synthase, chloroplastic OS=Actinidia chinensis GN=DHQS PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-24
Identity = 75/149 (50.34%), Postives = 83/149 (55.70%), Query Frame = 1


Query: 97  GVNFIQIPTTVLAQVDSSVGGKTD------KSSSGE---------ELDWRILPASMELAS 156
           GVNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 203 GVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELAS 262

Query: 157 GFAEVIKYG-------------HMPSLMARDPAALAYAIKRSCENKAE------------ 195
           G AEV+KYG             +MP+LMARDP+ALAYAIKRSCENKAE            
Sbjct: 263 GLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLR 322

[Close]

BLAST of CmoCh06G001140 vs. Swiss-Prot
Match: AROB_THICR (3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-22
Identity = 90/275 (32.73%), Postives = 122/275 (44.36%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALT-IGN 75
           VE+    YPI++   LL Q   +     ++ G +VLIVSN TV PLYL+K  +A +    
Sbjct: 6   VELGERSYPIFIGQGLLGQAELFKP---YVTGTQVLIVSNTTVAPLYLEKAKQAFSGYDV 65

Query: 76  PNVSVESDVRLSPLEVVSLVI-----------C-----------------------GVNF 135
             V +    +   L+V++ +            C                       GVNF
Sbjct: 66  KTVILPDGEQYKNLDVLNQIFDVAIENRFDRKCTFVALGGGVIGDMTGFAAASYQRGVNF 125

Query: 136 IQIPTTVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELASGFAE 195
           IQIPTT+L+QVDSSVGGKT       K+  G          + D        EL++G AE
Sbjct: 126 IQIPTTLLSQVDSSVGGKTGVNHPKGKNMIGAFHQPECVVIDTDTLNTLEDRELSAGLAE 185

Query: 196 VIKYG-------------HMPSLMARDPAALAYAIKRSCENKA----------------- 205
           VIKYG             ++P L+ARDP  LA AI+RSC+NKA                 
Sbjct: 186 VIKYGLIVDYPFFEWLEQNLPGLLARDPVVLAEAIERSCQNKATIVAKDEKEAGLRALFN 245

[Close]

BLAST of CmoCh06G001140 vs. Swiss-Prot
Match: AROB_NITOC (3-dehydroquinate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=aroB PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.9e-22
Identity = 96/302 (31.79%), Postives = 132/302 (43.71%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEAL----- 75
           V++    YPIY+ S LL Q     +   H+ G  V++V+N+TV PLYLD + + L     
Sbjct: 6   VDLQERSYPIYIGSGLLKQNSLLAK---HIVGSEVMVVTNETVAPLYLDTLLKGLKDYRC 65

Query: 76  -TIGNPN----------VSVESDVRLSPLEVVSLVIC-------------------GVNF 135
             I  P+            +  D+   P      VI                    GV +
Sbjct: 66  AEIILPDGEQHKTLAVLQQIFDDLLKVPFSRHCTVIALGGGVIGDMAGFAAACYQRGVAY 125

Query: 136 IQIPTTVLAQVDSSVGGKT------DKSSSGEELDWRILPA---------SMELASGFAE 195
           IQ+PTT+LAQVDSSVGGKT       K+  G     R + A           +L +G AE
Sbjct: 126 IQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPRCVLADTDTLDTLDERQLRAGLAE 185

Query: 196 VIKYG-------------HMPSLMARDPAALAYAIKRSCENKAE---------------- 232
           VIKYG             H   ++AR+P+AL +AI+RSC NKAE                
Sbjct: 186 VIKYGLIRDIDFFTWLEEHASEVLAREPSALIHAIERSCRNKAEIVAADERESGVRAILN 245

[Close]

BLAST of CmoCh06G001140 vs. Swiss-Prot
Match: DHQS_SOLLC (3-dehydroquinate synthase, chloroplastic OS=Solanum lycopersicum GN=DHQS PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 70/149 (46.98%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 97  GVNFIQIPTTVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELAS 156
           GVNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 200 GVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELAS 259

Query: 157 GFAEVIKYG-------------HMPSLMARDPAALAYAIKRSCENKAE------------ 195
           G AEVIKYG             +MP L+ARDP A  YAIKRSCENKA+            
Sbjct: 260 GLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVR 319

[Close]

BLAST of CmoCh06G001140 vs. TrEMBL
Match: A0A0A0L1L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002680 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.9e-40
Identity = 126/269 (46.84%), Postives = 142/269 (52.79%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LLDQ      +  H+HG+RVLIV+N+TV PLYLDKVTEALTIGNP
Sbjct: 93  VDLGDRSYPIYIGSGLLDQPEI---LQRHVHGKRVLIVTNETVAPLYLDKVTEALTIGNP 152

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NVSVE                            D R + + +   VI   CG        
Sbjct: 153 NVSVESVVLPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLR 212

Query: 136 -VNFIQIPTTVLAQVDSSVGGKTD------KSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 213 GVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVVVDTDTLNTLPDRELAS 272

[Close]

BLAST of CmoCh06G001140 vs. TrEMBL
Match: A0A0D2TY69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G062200 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 114/260 (43.85%), Postives = 135/260 (51.92%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LLDQ      +  H+HG++VL+V+N T+ PLYLDKV +ALT GNP
Sbjct: 86  VDLGNRSYPIYIGSGLLDQHEL---LQKHVHGKKVLVVTNTTIAPLYLDKVVDALTKGNP 145

Query: 76  NVSVES------------------DVRLSPLEVVSLVI---C---------GVNFIQIPT 135
           NVSVE+                  D R + + +   VI   C         GVNFIQIPT
Sbjct: 146 NVSVENVILPDGEKYKNMAIESRLDRRCTFVALGGGVIGDMCGFAAAAFLRGVNFIQIPT 205

Query: 136 TVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELASGFAEVIKYG 195
           TV+AQVDSSVGGKT       K+  G          + D        ELASG AEVIKYG
Sbjct: 206 TVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLSTLPDRELASGLAEVIKYG 265

[Close]

BLAST of CmoCh06G001140 vs. TrEMBL
Match: Q30D01_FAGSY (Putative 3-dehydroquinate synthase OS=Fagus sylvatica PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.4e-35
Identity = 116/262 (44.27%), Postives = 133/262 (50.76%), Query Frame = 1


Query: 23  YPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNPNVSVE-- 82
           YPIY+   LLDQ      +  H+HG+RVL+V+ND VGPLYLDKV EALT GNPNVSVE  
Sbjct: 107 YPIYIGPGLLDQPHL---LQKHVHGKRVLVVTNDKVGPLYLDKVVEALTKGNPNVSVESV 166

Query: 83  -------------------------SDVRLSPLEVVSLVI---CG---------VNFIQI 142
                                     D R + + +   VI   CG         +NFIQI
Sbjct: 167 ILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGINFIQI 226

Query: 143 PTTVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELASGFAEVIK 195
           PTTV+AQVDSSVGGKT       K+  G          + D        ELASG AEVIK
Sbjct: 227 PTTVMAQVDSSVGGKTGINHHLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIK 286

[Close]

BLAST of CmoCh06G001140 vs. TrEMBL
Match: A0A059AHP2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02467 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.8e-34
Identity = 113/269 (42.01%), Postives = 137/269 (50.93%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LLDQ      +  H+HG+RVL+V+NDTV P+YLDKV +ALT GNP
Sbjct: 92  VDLGDRSYPIYIGSGLLDQPEL---LQRHVHGKRVLVVTNDTVAPIYLDKVVDALTKGNP 151

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NVSV+                            D R + + +   VI   CG        
Sbjct: 152 NVSVDHVILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLR 211

Query: 136 -VNFIQIPTTVLAQVDSSVGGKTD------KSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV++QVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 212 GVNFIQIPTTVMSQVDSSVGGKTGINHHLGKNLIGAFYQPQCVLIDTDTLNTLPDRELAS 271

[Close]

BLAST of CmoCh06G001140 vs. TrEMBL
Match: A0A151THT1_CAJCA (3-dehydroquinate synthase OS=Cajanus cajan GN=KK1_012908 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.2e-34
Identity = 115/269 (42.75%), Postives = 136/269 (50.56%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LL +      +  H+HG+RVL+V+N TV PLYLDKV +ALT GNP
Sbjct: 204 VDLGNRSYPIYIGSGLLHEPDY---LQRHVHGKRVLVVTNKTVAPLYLDKVVDALTRGNP 263

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NVSVE                            D R + + +   VI   CG        
Sbjct: 264 NVSVESVILPDGEQYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAAASFLR 323

Query: 136 -VNFIQIPTTVLAQVDSSVGGKTD------KSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 324 GVNFIQIPTTVMAQVDSSVGGKTGINHHLGKNLIGAFYQPQCVLVDTDTLNTLPDRELAS 383

[Close]

BLAST of CmoCh06G001140 vs. TAIR10
Match: AT5G66120.2 (AT5G66120.2 3-dehydroquinate synthase, putative)

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-35
Identity = 109/269 (40.52%), Postives = 135/269 (50.19%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ + LLD       +  H+HG+RVL+V+ND V PLYLDK  +ALT GNP
Sbjct: 83  VDLGDRSYPIYIGAGLLDHSEL---LQRHVHGKRVLVVTNDRVAPLYLDKTIDALTRGNP 142

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NV+VE                            D R + + +   VI   CG        
Sbjct: 143 NVTVESVILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 202

Query: 136 -VNFIQIPTTVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        E+AS
Sbjct: 203 GVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDREMAS 262

[Close]

BLAST of CmoCh06G001140 vs. NCBI nr
Match: gi|659095342|ref|XP_008448531.1| (PREDICTED: 3-dehydroquinate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 127/269 (47.21%), Postives = 142/269 (52.79%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LLDQ      +  H+HG+RVLIV+NDTV PLYLDKVTEALTIGNP
Sbjct: 93  VDLGDRSYPIYIGSGLLDQPEI---LQRHVHGKRVLIVTNDTVAPLYLDKVTEALTIGNP 152

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NVSVE                            D R + + +   VI   CG        
Sbjct: 153 NVSVESVVLPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLR 212

Query: 136 -VNFIQIPTTVLAQVDSSVGGKTD------KSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 213 GVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVVVDTDTLNTLPDRELAS 272

[Close]

BLAST of CmoCh06G001140 vs. NCBI nr
Match: gi|449456829|ref|XP_004146151.1| (PREDICTED: 3-dehydroquinate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 8.4e-40
Identity = 126/269 (46.84%), Postives = 142/269 (52.79%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LLDQ      +  H+HG+RVLIV+N+TV PLYLDKVTEALTIGNP
Sbjct: 93  VDLGDRSYPIYIGSGLLDQPEI---LQRHVHGKRVLIVTNETVAPLYLDKVTEALTIGNP 152

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NVSVE                            D R + + +   VI   CG        
Sbjct: 153 NVSVESVVLPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLR 212

Query: 136 -VNFIQIPTTVLAQVDSSVGGKTD------KSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 213 GVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVVVDTDTLNTLPDRELAS 272

[Close]

BLAST of CmoCh06G001140 vs. NCBI nr
Match: gi|763781214|gb|KJB48285.1| (hypothetical protein B456_008G062200 [Gossypium raimondii])

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-35
Identity = 114/260 (43.85%), Postives = 135/260 (51.92%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LLDQ      +  H+HG++VL+V+N T+ PLYLDKV +ALT GNP
Sbjct: 86  VDLGNRSYPIYIGSGLLDQHEL---LQKHVHGKKVLVVTNTTIAPLYLDKVVDALTKGNP 145

Query: 76  NVSVES------------------DVRLSPLEVVSLVI---C---------GVNFIQIPT 135
           NVSVE+                  D R + + +   VI   C         GVNFIQIPT
Sbjct: 146 NVSVENVILPDGEKYKNMAIESRLDRRCTFVALGGGVIGDMCGFAAAAFLRGVNFIQIPT 205

Query: 136 TVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELASGFAEVIKYG 195
           TV+AQVDSSVGGKT       K+  G          + D        ELASG AEVIKYG
Sbjct: 206 TVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLSTLPDRELASGLAEVIKYG 265

[Close]

BLAST of CmoCh06G001140 vs. NCBI nr
Match: gi|76782192|gb|ABA54866.1| (putative 3-dehydroquinate synthase [Fagus sylvatica])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 116/262 (44.27%), Postives = 133/262 (50.76%), Query Frame = 1


Query: 23  YPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNPNVSVE-- 82
           YPIY+   LLDQ      +  H+HG+RVL+V+ND VGPLYLDKV EALT GNPNVSVE  
Sbjct: 107 YPIYIGPGLLDQPHL---LQKHVHGKRVLVVTNDKVGPLYLDKVVEALTKGNPNVSVESV 166

Query: 83  -------------------------SDVRLSPLEVVSLVI---CG---------VNFIQI 142
                                     D R + + +   VI   CG         +NFIQI
Sbjct: 167 ILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGINFIQI 226

Query: 143 PTTVLAQVDSSVGGKT------DKSSSGE---------ELDWRILPASMELASGFAEVIK 195
           PTTV+AQVDSSVGGKT       K+  G          + D        ELASG AEVIK
Sbjct: 227 PTTVMAQVDSSVGGKTGINHHLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIK 286

[Close]

BLAST of CmoCh06G001140 vs. NCBI nr
Match: gi|1009144381|ref|XP_015889769.1| (PREDICTED: 3-dehydroquinate synthase, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 115/269 (42.75%), Postives = 138/269 (51.30%), Query Frame = 1


Query: 16  VEIWINRYPIYLESDLLDQLGTWTEVNLHLHGRRVLIVSNDTVGPLYLDKVTEALTIGNP 75
           V++    YPIY+ S LLDQ      +  H+HG+RVL+V+N+T+ PLYLDKV +ALT GNP
Sbjct: 98  VDLGSRSYPIYIGSGLLDQPEL---LQRHVHGKRVLVVTNNTIAPLYLDKVVDALTRGNP 157

Query: 76  NVSVE---------------------------SDVRLSPLEVVSLVI---CG-------- 135
           NVSV+                            D R + + +   VI   CG        
Sbjct: 158 NVSVDSVILPDGEKYKDMDTLMKVFDKAIESRLDRRSTFVALGGGVIGDMCGYAAASFLR 217

Query: 136 -VNFIQIPTTVLAQVDSSVGGKTD------KSSSGE---------ELDWRILPASMELAS 195
            VNFIQIPTTV+AQVDSSVGGKT       K+  G          + D        ELAS
Sbjct: 218 GVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELAS 277

The following BLAST results are available for this feature:

BLAST of CmoCh06G001140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DHQS_ARATH	5.3e-34	40.52	3-dehydroquinate synthase, chloroplastic OS=Arabidopsis thaliana GN=DHQS PE=1 SV...	[more]
DHQS_ACTCH	1.7e-24	50.34	3-dehydroquinate synthase, chloroplastic OS=Actinidia chinensis GN=DHQS PE=1 SV=...	[more]
AROB_THICR	2.7e-22	32.73	3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB PE=...	[more]
AROB_NITOC	7.9e-22	31.79	3-dehydroquinate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 118...	[more]
DHQS_SOLLC	1.0e-21	46.98	3-dehydroquinate synthase, chloroplastic OS=Solanum lycopersicum GN=DHQS PE=2 SV...	[more]

BLAST of CmoCh06G001140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1L7_CUCSA	5.9e-40	46.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002680 PE=3 SV=1	[more]
A0A0D2TY69_GOSRA	3.3e-35	43.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G062200 PE=3 SV=1	[more]
Q30D01_FAGSY	7.4e-35	44.27	Putative 3-dehydroquinate synthase OS=Fagus sylvatica PE=2 SV=1	[more]
A0A059AHP2_EUCGR	4.8e-34	42.01	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02467 PE=3 SV=1	[more]
A0A151THT1_CAJCA	8.2e-34	42.75	3-dehydroquinate synthase OS=Cajanus cajan GN=KK1_012908 PE=3 SV=1	[more]

BLAST of CmoCh06G001140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66120.2	3.0e-35	40.52	3-dehydroquinate synthase, putative	[more]

BLAST of CmoCh06G001140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095342\|ref\|XP_008448531.1\|	2.9e-40	47.21	PREDICTED: 3-dehydroquinate synthase, chloroplastic [Cucumis melo]	[more]
gi\|449456829\|ref\|XP_004146151.1\|	8.4e-40	46.84	PREDICTED: 3-dehydroquinate synthase, chloroplastic [Cucumis sativus]	[more]
gi\|763781214\|gb\|KJB48285.1\|	4.8e-35	43.85	hypothetical protein B456_008G062200 [Gossypium raimondii]	[more]
gi\|76782192\|gb\|ABA54866.1\|	1.1e-34	44.27	putative 3-dehydroquinate synthase [Fagus sylvatica]	[more]
gi\|1009144381\|ref\|XP_015889769.1\|	1.1e-34	42.75	PREDICTED: 3-dehydroquinate synthase, chloroplastic-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046394	carboxylic acid biosynthetic process
biological_process	GO:0033587	shikimate biosynthetic process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0006571	tyrosine biosynthetic process
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0009094	L-phenylalanine biosynthetic process
biological_process	GO:0009423	chorismate biosynthetic process
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016838	carbon-oxygen lyase activity, acting on phosphates
molecular_function	GO:0005488	binding
molecular_function	GO:0003856	3-dehydroquinate synthase activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051287	NAD binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G001140.1	CmoCh06G001140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.1970		coord: 21..76 score: 1.0E-5coord: 92..119 score: 8.1
None	No IPR available	PANTHER	PTHR21090	AROM/DEHYDROQUINATE SYNTHASE	coord: 6..194 score: 2.1
None	No IPR available	PANTHER	PTHR21090:SF13	3-DEHYDROQUINATE SYNTHASE, CHLOROPLASTIC	coord: 6..194 score: 2.1
None	No IPR available	unknown	SSF56796	Dehydroquinate synthase-like	coord: 16..204 score: 1.09

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G001140	Cucsa.322740	Cucumber (Gy14) v1	cgycmoB0894
CmoCh06G001140	Cla008910	Watermelon (97103) v1	cmowmB775
CmoCh06G001140	Csa3G002680	Cucumber (Chinese Long) v2	cmocuB817
CmoCh06G001140	MELO3C013755	Melon (DHL92) v3.5.1	cmomeB757
CmoCh06G001140	ClCG10G000590	Watermelon (Charleston Gray)	cmowcgB731
CmoCh06G001140	CSPI03G00630	Wild cucumber (PI 183967)	cmocpiB825
CmoCh06G001140	Lsi07G010910	Bottle gourd (USVL1VR-Ls)	cmolsiB767
CmoCh06G001140	Cp4.1LG14g10370	Cucurbita pepo (Zucchini)	cmocpeB769
CmoCh06G001140	MELO3C013755.2	Melon (DHL92) v3.6.1	cmomedB862
CmoCh06G001140	Cla97C10G185160	Watermelon (97103) v2	cmowmbB820
CmoCh06G001140	CsGy3G000590	Cucumber (Gy14) v2	cgybcmoB411
CmoCh06G001140	Carg19466	Silver-seed gourd	carcmoB0583

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G001140	CmoCh16G012930	Cucurbita moschata (Rifu)	cmocmoB292

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G001140	Silver-seed gourd	carcmoB0227
CmoCh06G001140	Cucumber (Chinese Long) v3	cmocucB0963
CmoCh06G001140	Cucurbita maxima (Rimu)	cmacmoB342
CmoCh06G001140	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G001140	Cucurbita pepo (Zucchini)	cmocpeB797