CmoCh05G012430 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G012430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box protein
Location	Cmo_Chr05 : 9671854 .. 9672405 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTCTATCTTGGCTTCCGCCCGAGACTCTGCTCCGTTTCAAGTCCGTTCACAAATCTTGGTATGCTCTAATCAACGATCCTAAATTCATATTAAAGCATTTTTTGAATTCTCCTCAATACAATCACATATTTCTCAAGCGGATTGTGGAGATAGACTATGATAAAGATAAAAGTACGTTCTCCATTCTCAATTTTTCTCTTGATCCATACCTGTTCGTTCTGGATATAGATTTATCAGACTATCAATATTCTCAATATTTTGAAATTCATGGCCATTCTCACTGTATGGTTTGCGTCGCCGATGTTATGAATGTTTCGAATGTTTTCCTTTGTAACCCAGCAACTAGAGAGTTTCGTAAACTCCCACCGTCCATTTTTCCCGTTTATACCATCACTGATGCCTCTCCCCGTCCTATTTGTTACGAGTTGATAATGCAAGCGTCAGATTTGGGTACGATGCAAATTCCATACGATGTAAATTCCAGGGATTTTAAAGTGGTTAGAGTTGTGGATATTGTTGGACTCCGTCGTGGATATCCGGTTTGA

mRNA sequence

ATGGAGATTCTATCTTGGCTTCCGCCCGAGACTCTGCTCCGTTTCAAGTCCGTTCACAAATCTTGGTATGCTCTAATCAACGATCCTAAATTCATATTAAAGCATTTTTTGAATTCTCCTCAATACAATCACATATTTCTCAAGCGGATTGTGGAGATAGACTATGATAAAGATAAAAGTACGTTCTCCATTCTCAATTTTTCTCTTGATCCATACCTGTTCGTTCTGGATATAGATTTATCAGACTATCAATATTCTCAATATTTTGAAATTCATGGCCATTCTCACTGTATGGTTTGCGTCGCCGATGTTATGAATGTTTCGAATGTTTTCCTTTGTAACCCAGCAACTAGAGAGTTTCGTAAACTCCCACCGTCCATTTTTCCCGTTTATACCATCACTGATGCCTCTCCCCGTCCTATTTGTTACGAGTTGATAATGCAAGCGTCAGATTTGGGTACGATGCAAATTCCATACGATGTAAATTCCAGGGATTTTAAAGTGGTTAGAGTTGTGGATATTGTTGGACTCCGTCGTGGATATCCGGTTTGA

Coding sequence (CDS)

ATGGAGATTCTATCTTGGCTTCCGCCCGAGACTCTGCTCCGTTTCAAGTCCGTTCACAAATCTTGGTATGCTCTAATCAACGATCCTAAATTCATATTAAAGCATTTTTTGAATTCTCCTCAATACAATCACATATTTCTCAAGCGGATTGTGGAGATAGACTATGATAAAGATAAAAGTACGTTCTCCATTCTCAATTTTTCTCTTGATCCATACCTGTTCGTTCTGGATATAGATTTATCAGACTATCAATATTCTCAATATTTTGAAATTCATGGCCATTCTCACTGTATGGTTTGCGTCGCCGATGTTATGAATGTTTCGAATGTTTTCCTTTGTAACCCAGCAACTAGAGAGTTTCGTAAACTCCCACCGTCCATTTTTCCCGTTTATACCATCACTGATGCCTCTCCCCGTCCTATTTGTTACGAGTTGATAATGCAAGCGTCAGATTTGGGTACGATGCAAATTCCATACGATGTAAATTCCAGGGATTTTAAAGTGGTTAGAGTTGTGGATATTGTTGGACTCCGTCGTGGATATCCGGTTTGA

Homology

[Close]

BLAST of CmoCh05G012430 vs. Swiss-Prot
Match: FB341_ARATH (F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-07
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKS 60
           ++IL+ LP ++L RFKSV KSWY L +D  F       +  +N + +K  + +    D S
Sbjct: 15  LQILARLPVKSLFRFKSVCKSWYRLPSDKYF-------TSLFNQLSVKEQLLVAEVSDSS 74

Query: 61  TFSILNFSLDPYLFVLDIDLSDYQYSQYFEIHGHSHCMVCVADVMNVSNVFLCNPATREF 120
           +       +D    V ++ L   +      I   S+ ++C + +      ++CNP+TRE+
Sbjct: 75  SL----ICVDNLRGVSELSLDFVR--DRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREY 127

Query: 121 RKLPPS 127
           RKLP S
Sbjct: 135 RKLPKS 127

[Close]

BLAST of CmoCh05G012430 vs. TrEMBL
Match: U5Q900_9ROSA (SLF4-S21 OS=Pyrus x bretschneideri GN=SLF4-S21 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 67/187 (35.83%), Postives = 101/187 (54.01%), Query Frame = 1


Query: 3   ILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNS-----PQYNHIFLKRIVEIDYDK 62
           I+S LPP++L+RFK + KSW  LIN P F+ KH  N+       Y  I L R  ++    
Sbjct: 17  IMSKLPPKSLMRFKCIRKSWCTLINSPSFVAKHLSNAVDNKFSSYTCILLNR-SQVHVFP 76

Query: 63  DKS-----TFSILNFSLDPYLFVLDIDLSDYQY------SQYFEIHGHSHCMVCVADVMN 122
           DKS      +S++NF  D     L  D+ D          Q+  IHG+ H +VC   V++
Sbjct: 77  DKSWKHEVLWSMINFFNDRVACTLYYDVEDLNIPFPRDDHQHVLIHGYCHGIVC---VIS 136

Query: 123 VSNVFLCNPATREFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDF 174
             N+ LCNPATREFR+LP S+  +       P P+  +  ++ +D G +   YD  ++D+
Sbjct: 137 GKNILLCNPATREFRQLPDSLLLL-------PSPLSGKFELE-TDFGGLGFGYDCRAKDY 191

[Close]

BLAST of CmoCh05G012430 vs. TrEMBL
Match: E5RPD1_PYRPY (Putative uncharacterized protein PpSFBB2-u3 OS=Pyrus pyrifolia GN=PpSFBB2-u3 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 67/187 (35.83%), Postives = 101/187 (54.01%), Query Frame = 1


Query: 3   ILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNS-----PQYNHIFLKRIVEIDYDK 62
           I+S LPP++L+RFK + KSW  LIN P F+ KH  N+       Y  I L R  ++    
Sbjct: 17  IMSKLPPKSLMRFKCIRKSWCTLINSPSFVAKHLSNAVDNKFSSYTCILLNR-SQVHVFP 76

Query: 63  DKS-----TFSILNFSLDPYLFVLDIDLSDYQY------SQYFEIHGHSHCMVCVADVMN 122
           DKS      +S++NF  D     L  D+ D          Q+  IHG+ H +VC   V++
Sbjct: 77  DKSWKHEVLWSMINFFNDRVACTLYYDVEDLNIPFPRDDHQHVLIHGYCHGIVC---VIS 136

Query: 123 VSNVFLCNPATREFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDF 174
             N+ LCNPATREFR+LP S+  +       P P+  +  ++ +D G +   YD  ++D+
Sbjct: 137 GKNILLCNPATREFRQLPDSLLLL-------PSPLSGKFELE-TDFGGLGFGYDCRAKDY 191

[Close]

BLAST of CmoCh05G012430 vs. TrEMBL
Match: G1UHZ2_PYRPY (S-locus F-box brothers4-S3 OS=Pyrus pyrifolia GN=SFBB4-S3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 3   ILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNS-----PQYNHIFLKRIVEIDYDK 62
           I+S LPP++L+RFK + KSW  LIN P F+ KH  N+       Y  I L R  ++    
Sbjct: 17  IMSKLPPKSLMRFKCIRKSWCTLINSPSFVAKHLSNAVDNKFSSYTCILLNR-SQVHVFP 76

Query: 63  DKS-----TFSILNFSLDPYLFVLDIDLSDYQY------SQYFEIHGHSHCMVCVADVMN 122
           DKS      +S++NF  D     L  D+ D          Q+  IHG+ + +VC   V++
Sbjct: 77  DKSWKHEVLWSMINFFNDRVARTLYYDVEDLNIPFPRDDHQHILIHGYCNGIVC---VIS 136

Query: 123 VSNVFLCNPATREFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDF 174
             N+ LCNPATREFR+LP S   +       P P+  +  ++ +D G +   YD  ++D+
Sbjct: 137 GKNILLCNPATREFRQLPDSFLLL-------PSPLGGKFELE-TDFGGLGFGYDCRAKDY 191

[Close]

BLAST of CmoCh05G012430 vs. TrEMBL
Match: A0MCH6_MALDO (S1-locus F-box OS=Malus domestica GN=SLF1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 65/187 (34.76%), Postives = 101/187 (54.01%), Query Frame = 1


Query: 3   ILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNS-----PQYNHIFLKRIVEIDYDK 62
           I+S LPP++L+RFK + KSW  LIN+P F+ KH  NS       Y  I L R  ++    
Sbjct: 17  IMSKLPPKSLMRFKCIRKSWCTLINNPSFVAKHLSNSVDNNFSSYTCILLNR-SQVHVFP 76

Query: 63  DKS-----TFSILNFSLDPYLFVLDIDLSDYQY------SQYFEIHGHSHCMVCVADVMN 122
           DKS      +S++NF  D     L  ++ D          ++  IHG+ + +VC   V++
Sbjct: 77  DKSWKHEVLWSMINFFNDRVSRTLYYNVEDLNIPFPRDDHEHILIHGYCNGIVC---VIS 136

Query: 123 VSNVFLCNPATREFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDF 174
             N+ LCNPATREFR+LP S   +       P P+  +  ++ +D G +   YD  ++D+
Sbjct: 137 GKNILLCNPATREFRQLPDSFLLL-------PSPLGGKFELE-TDFGGLGFGYDCRAKDY 191

[Close]

BLAST of CmoCh05G012430 vs. TrEMBL
Match: E0XL50_MALDO (S-locus F-box brothers OS=Malus domestica GN=SLFB5 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 65/187 (34.76%), Postives = 101/187 (54.01%), Query Frame = 1


Query: 3   ILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNS-----PQYNHIFLKRIVEIDYDK 62
           I+S LPP++L+RFK + KSW  LIN+P F+ KH  NS       Y  I L R  ++    
Sbjct: 17  IMSKLPPKSLMRFKCIRKSWCTLINNPSFVAKHLSNSVVNNFSSYTCILLNR-SQVHVFP 76

Query: 63  DKS-----TFSILNFSLDPYLFVLDIDLSDYQY------SQYFEIHGHSHCMVCVADVMN 122
           DKS      +S++NF  D     L  ++ D          ++  IHG+ + +VC   V++
Sbjct: 77  DKSWKHEVLWSMINFFNDRVSRTLYYNVEDLNIPFPRDDHEHILIHGYCNGIVC---VIS 136

Query: 123 VSNVFLCNPATREFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDF 174
             N+ LCNPATREFR+LP S   +       P P+  +  ++ +D G +   YD  ++D+
Sbjct: 137 GKNILLCNPATREFRQLPDSFLLL-------PSPLGGKFELE-TDFGGLGFGYDCRAKDY 191

[Close]

BLAST of CmoCh05G012430 vs. TAIR10
Match: AT5G49610.1 (AT5G49610.1 F-box family protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKS 60
           ++IL+ LP ++L RFKSV KSWY L +D  F       +  +N + +K  + +    D S
Sbjct: 15  LQILARLPVKSLFRFKSVCKSWYRLPSDKYF-------TSLFNQLSVKEQLLVAEVSDSS 74

Query: 61  TFSILNFSLDPYLFVLDIDLSDYQYSQYFEIHGHSHCMVCVADVMNVSNVFLCNPATREF 120
           +       +D    V ++ L   +      I   S+ ++C + +      ++CNP+TRE+
Sbjct: 75  SL----ICVDNLRGVSELSLDFVR--DRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREY 127

Query: 121 RKLPPS 127
           RKLP S
Sbjct: 135 RKLPKS 127

[Close]

BLAST of CmoCh05G012430 vs. TAIR10
Match: AT3G08750.1 (AT3G08750.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.9e-07
Identity = 37/134 (27.61%), Postives = 64/134 (47.76%), Query Frame = 1


Query: 2   EILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKST 61
           EIL  +P E+L+RFKS  K WY LI + +F+  H       +H   +R +   YD+    
Sbjct: 19  EILYKIPAESLIRFKSTCKKWYNLITEKRFMYNHL------DHYSPERFIR-TYDQQ--- 78

Query: 62  FSILNFSLDPYLFVLDIDLSDYQYSQYFEIHGHSHC---MVCVADVMNVSNVFLCNPATR 121
                  +DP   +L   L   ++   + I+   HC   M+C     + +++ + NP  R
Sbjct: 79  ------IIDPVTEILSDALIPDEFRDLYPIYSMVHCDGLMLCTCRKWD-NSLAVWNPVLR 135

Query: 122 EFRKLPPSIFPVYT 133
           E + + PS+  ++T
Sbjct: 139 EIKWIKPSVCYLHT 135

[Close]

BLAST of CmoCh05G012430 vs. TAIR10
Match: AT3G10430.1 (AT3G10430.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06
Identity = 50/175 (28.57%), Postives = 80/175 (45.71%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALI-NDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDK 60
           +EIL   P E+LLRFKS  K WY LI ND +F+ KH   S        KR + I+   ++
Sbjct: 11  LEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHLDKS-------TKRFLRIE---NR 70

Query: 61  STFSILNFSLDPYLFVLDIDL--SDYQYSQYFEIHGHSHCM-VCVADVMNVSNVFLCNPA 120
               I    LDP   +L +    ++ ++  +  IH     + +C  ++ +  N+ + NP 
Sbjct: 71  ERVQI----LDPVTEILAVSTIPNELRHKYFTLIHCDGLMLGMCYEELGSDPNLAVWNPV 130

Query: 121 TREFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRD-FKVVR 171
            R+ + + P           SP  +CY      SD   +   YD   RD +K++R
Sbjct: 131 MRKIKWIKP-----------SPPLVCY----WGSDY--LGFGYDKTFRDNYKILR 154

[Close]

BLAST of CmoCh05G012430 vs. TAIR10
Match: AT4G04690.1 (AT4G04690.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-06
Identity = 38/134 (28.36%), Postives = 61/134 (45.52%), Query Frame = 1


Query: 2   EILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKST 61
           EIL   P E+L RFKS  K WY +I   +F+  H  +SP+       R + ID   D  T
Sbjct: 18  EILKKTPAESLNRFKSTCKQWYGIITSKRFMYNHLDHSPE-------RFIRID---DHKT 77

Query: 62  FSILN-----FSLDPYLFVLDIDLSDYQYSQYFEIHGHSHCMVCVA-----DVMNVSNVF 121
             I++     FS  P   V D+  S + ++      G    M+C+      +    +N+ 
Sbjct: 78  VQIMDPMTGIFSDSP---VPDVFRSPHSFASMVHCDG---LMLCICSDSSYERTREANLA 135

Query: 122 LCNPATREFRKLPP 126
           + NP T++ + + P
Sbjct: 138 VWNPVTKKIKWIEP 135

[Close]

BLAST of CmoCh05G012430 vs. NCBI nr
Match: gi|659085409|ref|XP_008443403.1| (PREDICTED: F-box protein CPR30-like [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 90/177 (50.85%), Postives = 114/177 (64.41%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKS 60
           +EILS LPPE+LLRFK V KSWYAL NDPKF  KHF  S Q+ H+ LKR+V  D  K ++
Sbjct: 13  IEILSRLPPESLLRFKCVRKSWYALFNDPKFKAKHFSTSLQHKHLLLKRLVTKDSGKKEN 72

Query: 61  TFSILN--FSLDPYLFVLDIDLSDYQYSQYFEIHGHSHCMVCVADVMNVSNVFLCNPATR 120
            FSIL    S+   L + DIDL  ++  ++FEIHGHSH ++C+ D+    ++FLCNP+TR
Sbjct: 73  IFSILKLPLSIHSSLSISDIDLPFHEDFRFFEIHGHSHGLLCLTDLR--KDIFLCNPSTR 132

Query: 121 EFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDFKVVRVVDIV 176
           EF +LPPSI     + + S  P  Y+    A   G     YD  SRDFKVVRVVD V
Sbjct: 133 EFHQLPPSIL---LLPEPSAEPDDYDSSTNAVGFG-----YDSKSRDFKVVRVVDFV 179

[Close]

BLAST of CmoCh05G012430 vs. NCBI nr
Match: gi|659085405|ref|XP_008443401.1| (PREDICTED: F-box protein CPR30-like [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 4.4e-36
Identity = 88/177 (49.72%), Postives = 114/177 (64.41%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKS 60
           +EILS LPPE+LLRFK V KSWYAL NDPKF  KHF  S Q+ H+ LKR V  +   +++
Sbjct: 13  IEILSRLPPESLLRFKCVRKSWYALFNDPKFKEKHFSTSLQHKHVLLKRFVTKESGNEEN 72

Query: 61  TFSILN--FSLDPYLFVLDIDLSDYQYSQYFEIHGHSHCMVCVADVMNVSNVFLCNPATR 120
            FSIL    S+   L + DIDL  ++  ++FE+HGHSH ++C+ D++   ++FLCNP+TR
Sbjct: 73  IFSILKLPLSIHSSLSISDIDLPFHEDFRFFELHGHSHGLLCLTDLL--KDIFLCNPSTR 132

Query: 121 EFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDFKVVRVVDIV 176
           EF KLPPSI     +T+    P  Y+    A   G     YD  SRDFKVVRVVD V
Sbjct: 133 EFHKLPPSIL---LLTEPPAEPDGYDSSTNAVGFG-----YDSKSRDFKVVRVVDFV 179

[Close]

BLAST of CmoCh05G012430 vs. NCBI nr
Match: gi|778685544|ref|XP_004147498.2| (PREDICTED: F-box protein CPR30-like [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 88/177 (49.72%), Postives = 112/177 (63.28%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKS 60
           ++ILS LPPE+LLRFK V KSWYAL NDPKF  KHF  S Q+ HI LKR+V       ++
Sbjct: 13  IDILSRLPPESLLRFKCVRKSWYALFNDPKFKAKHFSTSLQHKHILLKRLVTKHSGNKEN 72

Query: 61  TFSI--LNFSLDPYLFVLDIDLSDYQYSQYFEIHGHSHCMVCVADVMNVSNVFLCNPATR 120
            FS+  L  S+ P L + DIDL  ++  ++FEI GHSH ++C+ D+    ++FLCNP+TR
Sbjct: 73  IFSLFKLPLSIHPSLSLSDIDLPFHEDFRFFEIRGHSHGLLCLTDLR--KDIFLCNPSTR 132

Query: 121 EFRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDFKVVRVVDIV 176
           EF KLPPSI     +T+    P  Y+    A   G     YD  SRDFKVVRVVD V
Sbjct: 133 EFHKLPPSIL---LLTEPPVEPDDYDSSTNAVGFG-----YDSKSRDFKVVRVVDFV 179

[Close]

BLAST of CmoCh05G012430 vs. NCBI nr
Match: gi|778688805|ref|XP_011652842.1| (PREDICTED: F-box protein CPR30-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 8.6e-32
Identity = 82/177 (46.33%), Postives = 117/177 (66.10%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKS 60
           + ILS LPPE+LLRFKSV K+WYALINDPKF+ KH L+S  + H+ LKRI+  +  K + 
Sbjct: 9   IHILSKLPPESLLRFKSVCKTWYALINDPKFVTKHLLDSSPHKHVLLKRIIINNSGKKEH 68

Query: 61  TFSILNFSLDPYL-FVLDIDLS--DYQYSQYFEIHGHSHCMVCVADVMNVSNVFLCNPAT 120
            FS+L FSLD  +  +LDI L   D++ +    I GHSH ++C++D  +  ++FLCNP T
Sbjct: 69  VFSLLKFSLDRSVSSILDIPLPLIDHEDNPALRISGHSHGLICLSD--STPDIFLCNPMT 128

Query: 121 REFRKLPPSIFPVYTITDASPRPICYELIMQASDL--GTMQIPYDVNSRDFKVVRVV 173
           R+FRKLPP++     + D+ P+ I  + + + +DL    +   YDV   DFKVVRV+
Sbjct: 129 RQFRKLPPTVI----VDDSEPQDI--DEMQEDADLMPKAVGFGYDVQCGDFKVVRVM 177

[Close]

BLAST of CmoCh05G012430 vs. NCBI nr
Match: gi|449440365|ref|XP_004137955.1| (PREDICTED: F-box protein CPR30-like [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-30
Identity = 82/173 (47.40%), Postives = 111/173 (64.16%), Query Frame = 1


Query: 1   MEILSWLPPETLLRFKSVHKSWYALINDPKFILKHFLNSPQYNHIFLKRIVEIDYDKDKS 60
           + ILS LPPE+LLRFKSV KSWYALINDPKF+ KH L+S  +  + +KR++  +  K + 
Sbjct: 8   IHILSKLPPESLLRFKSVCKSWYALINDPKFVTKHLLDSFSHKQVLIKRVITNNSGKKEH 67

Query: 61  TFSILNFSLDPYL-FVLDIDLSDYQYSQYFEIHGHSHCMVCVADVMNVSNVFLCNPATRE 120
            FSIL FSLD  +  VL++ L   +  Q F+I GHSH ++C+  V N  ++FL NP TR+
Sbjct: 68  VFSILKFSLDRSVSSVLNVPLPFPENLQAFQIRGHSHGLICLISVDN-PDIFLSNPMTRQ 127

Query: 121 FRKLPPSIFPVYTITDASPRPICYELIMQASDLGTMQIPYDVNSRDFKVVRVV 173
           F KLPP+I     I D  P+ +  +L+ +A   G     YDV   +FKVVRVV
Sbjct: 128 FHKLPPTI-----IVDPEPQDV--DLMPEAIGFG-----YDVKCGNFKVVRVV 167

The following BLAST results are available for this feature:

BLAST of CmoCh05G012430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB341_ARATH	5.6e-07	30.16	F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1	[more]

BLAST of CmoCh05G012430 vs. TrEMBL


Match Name	E-value	Identity	Description
U5Q900_9ROSA	1.5e-19	35.83	SLF4-S21 OS=Pyrus x bretschneideri GN=SLF4-S21 PE=2 SV=1	[more]
E5RPD1_PYRPY	1.5e-19	35.83	Putative uncharacterized protein PpSFBB2-u3 OS=Pyrus pyrifolia GN=PpSFBB2-u3 PE=...	[more]
G1UHZ2_PYRPY	2.9e-18	35.29	S-locus F-box brothers4-S3 OS=Pyrus pyrifolia GN=SFBB4-S3 PE=2 SV=1	[more]
A0MCH6_MALDO	1.1e-17	34.76	S1-locus F-box OS=Malus domestica GN=SLF1 PE=2 SV=1	[more]
E0XL50_MALDO	1.1e-17	34.76	S-locus F-box brothers OS=Malus domestica GN=SLFB5 PE=2 SV=1	[more]

BLAST of CmoCh05G012430 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49610.1	3.2e-08	30.16	F-box family protein	[more]
AT3G08750.1	5.9e-07	27.61	F-box and associated interaction domains-containing protein	[more]
AT3G10430.1	3.9e-06	28.57	F-box and associated interaction domains-containing protein	[more]
AT4G04690.1	6.6e-06	28.36	F-box and associated interaction domains-containing protein	[more]

BLAST of CmoCh05G012430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085409\|ref\|XP_008443403.1\|	2.0e-36	50.85	PREDICTED: F-box protein CPR30-like [Cucumis melo]	[more]
gi\|659085405\|ref\|XP_008443401.1\|	4.4e-36	49.72	PREDICTED: F-box protein CPR30-like [Cucumis melo]	[more]
gi\|778685544\|ref\|XP_004147498.2\|	1.1e-34	49.72	PREDICTED: F-box protein CPR30-like [Cucumis sativus]	[more]
gi\|778688805\|ref\|XP_011652842.1\|	8.6e-32	46.33	PREDICTED: F-box protein CPR30-like [Cucumis sativus]	[more]
gi\|449440365\|ref\|XP_004137955.1\|	2.8e-30	47.40	PREDICTED: F-box protein CPR30-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G012430.1	CmoCh05G012430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 1..36 score: 3.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 1..43 score: 7.72
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 1..31 score: 1.
None	No IPR available	PANTHER	PTHR32133	FAMILY NOT NAMED	coord: 1..128 score: 8.2E-22coord: 154..173 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G012430	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G012430	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G012430	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G012430	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G012430	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G012430	Silver-seed gourd	carcmoB1442
CmoCh05G012430	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G012430	Watermelon (97103) v2	cmowmbB785
CmoCh05G012430	Wax gourd	cmowgoB0919
CmoCh05G012430	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh05G012430	Cucumber (Gy14) v1	cgycmoB0362
CmoCh05G012430	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G012430	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G012430	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G012430	Cucumber (Chinese Long) v2	cmocuB783
CmoCh05G012430	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G012430	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G012430	Watermelon (97103) v1	cmowmB757