CmoCh05G012280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G012280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Wound-induced protein WIN1
Location	Cmo_Chr05 : 9603088 .. 9603837 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAGAAAGAAAATAATGGAGAAAGTGAGCATTTTGATGATATTGGCTTTGGCTTTGGGCGTTTTGAGCTTGGCTAATGCTCAAAGTGCCAACAATGTGAGGGCTACTTACCATTTGTATAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTTTTGTGCAACATGGGATGCCAACAAGCCCATCGAGTGGCGTCGTCAGTACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGCTTGAGGGTAAGTAAATCTTCTGGCTCTTGCGAAAAATTATCATGTTTTAGAGTTACAAATATGCTGAGAAATTTTCATGGAAATGTTTGCAGGTCACTAACACTGAAACAGGAGCTTCAGAAATTGTGAGAATCGTTGATCAATGTGCCAATGGAGGGCTGGATTTGGATGTGAATGTGTTTAAGAGAATCGACACCAATGGAAATGGAGTCTTCCGAGGCCATCTTATTGTCAACTATCAATTTGTCAATTGCTAAGATTTTTCTTTCGGTTTATTCTTCCTAGAAGAAGAAAGAAAGAATATCACGTTCTAATAAATAAAGTATGAACAATAAACTATGAATTCGAGGTTTCTTGAATTTATGAACTTTTTTTTTTATAATGGTACCACCATCTTTGAAAGTTAAGAAATGCATTAAATCTCTTATAAATCGTGCGTAACGTGATTGTGTTCATAACTATTTACGTTCATTATAG

mRNA sequence

TCAAGAAAGAAAATAATGGAGAAAGTGAGCATTTTGATGATATTGGCTTTGGCTTTGGGCGTTTTGAGCTTGGCTAATGCTCAAAGTGCCAACAATGTGAGGGCTACTTACCATTTGTATAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTTTTGTGCAACATGGGATGCCAACAAGCCCATCGAGTGGCGTCGTCAGTACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGCTTGAGGGTCACTAACACTGAAACAGGAGCTTCAGAAATTGTGAGAATCGTTGATCAATGTGCCAATGGAGGGCTGGATTTGGATGTGAATGTGTTTAAGAGAATCGACACCAATGGAAATGGAGTCTTCCGAGGCCATCTTATTGTCAACTATCAATTTGTCAATTGCTAAGATTTTTCTTTCGGTTTATTCTTCCTAGAAGAAGAAAGAAAGAATATCACGTTCTAATAAATAAAGTATGAACAATAAACTATGAATTCGAGGTTTCTTGAATTTATGAACTTTTTTTTTTATAATGGTACCACCATCTTTGAAAGTTAAGAAATGCATTAAATCTCTTATAAATCGTGCGTAACGTGATTGTGTTCATAACTATTTACGTTCATTATAG

Coding sequence (CDS)

ATGGAGAAAGTGAGCATTTTGATGATATTGGCTTTGGCTTTGGGCGTTTTGAGCTTGGCTAATGCTCAAAGTGCCAACAATGTGAGGGCTACTTACCATTTGTATAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTTTTGTGCAACATGGGATGCCAACAAGCCCATCGAGTGGCGTCGTCAGTACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGCTTGAGGGTCACTAACACTGAAACAGGAGCTTCAGAAATTGTGAGAATCGTTGATCAATGTGCCAATGGAGGGCTGGATTTGGATGTGAATGTGTTTAAGAGAATCGACACCAATGGAAATGGAGTCTTCCGAGGCCATCTTATTGTCAACTATCAATTTGTCAATTGCTAA

Homology

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BLAST of CmoCh05G012280 vs. Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 102/143 (71.33%), Postives = 118/143 (82.52%), Query Frame = 1


Query: 1   MEKVSILMILALALGVL-SLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKP 60
           ME+V+ L +    + ++ ++A AQSA NVRATYHLYNPQ+INWD   ASV+CATWDA+KP
Sbjct: 1   MERVNKLCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKP 60

Query: 61  IEWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFK 120
           +EWRR+YGWTAFCGP GP GQASCGRCLRVTNT TG  E VRIVDQC NGGLDLDVNVF 
Sbjct: 61  LEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFN 120

Query: 121 RIDTNGNGVFRGHLIVNYQFVNC 143
           R+DTNG G  RG+L VNY+FVNC
Sbjct: 121 RLDTNGLGYQRGNLNVNYEFVNC 143

[Close]

BLAST of CmoCh05G012280 vs. Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.3e-55
Identity = 98/145 (67.59%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1   MEKVS---ILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDAN 60
           ME+V+   + + L +   ++++A AQSA NVR+TYHLYNPQ+INWD   AS FCATWDA+
Sbjct: 1   MERVNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDAD 60

Query: 61  KPIEWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNV 120
           KP+ WR++YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQC+NGGLDLDVNV
Sbjct: 61  KPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNV 120

Query: 121 FKRIDTNGNGVFRGHLIVNYQFVNC 143
           F ++DTNG G  +GHLIVNY+FVNC
Sbjct: 121 FNQLDTNGLGYQQGHLIVNYEFVNC 145

[Close]

BLAST of CmoCh05G012280 vs. Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 1


Query: 1   MEKVS---ILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDAN 60
           ME+V+   + + L +   V+++A AQSA NVR+TYHLYNPQ+INWD   AS FCATWDA+
Sbjct: 1   MERVNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDAD 60

Query: 61  KPIEWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNV 120
           KP+ WR++YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQC+NGGLDLDVNV
Sbjct: 61  KPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNV 120

Query: 121 FKRIDTNGNGVFRGHLIVNYQFVNC 143
           F ++DTNG G  +GHL VNY+FVNC
Sbjct: 121 FNQLDTNGVGYQQGHLTVNYEFVNC 145

[Close]

BLAST of CmoCh05G012280 vs. Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-53
Identity = 88/119 (73.95%), Postives = 104/119 (87.39%), Query Frame = 1


Query: 24  SANNVRATYHLYNPQDINWDYLRASVFCATWDANKPIEWRRQYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S +C+TWDANKP+ WR++YGWTAFCGPVGPRG+ SC
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 84  GRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKRIDTNGNGVFRGHLIVNYQFVNC 143
           G+CLRVTNT TGA   VRIVDQC+NGGLDLDVNVF++IDT+GNG  +GHLIVNYQFV+C
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDC 197

[Close]

BLAST of CmoCh05G012280 vs. Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 87/119 (73.11%), Postives = 101/119 (84.87%), Query Frame = 1


Query: 24  SANNVRATYHLYNPQDINWDYLRASVFCATWDANKPIEWRRQYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S +C+TWDANKP  WR +YGWTAFCGPVGPRG+ SC
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 84  GRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKRIDTNGNGVFRGHLIVNYQFVNC 143
           G+CLRVTNT TGA   VRIVDQC+NGGLDLD+NVF++IDT+G G  +GHLIVNYQFVNC
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNC 196

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BLAST of CmoCh05G012280 vs. TrEMBL
Match: A0A0A0LIC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010390 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-71
Identity = 130/142 (91.55%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60
           M K SI+MIL LALGVLSLANAQSA NVRATYHLYNPQDINWDYLRASVFCATWDA+KP+
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120
           EWRRQYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGVFRGHLIVNYQFVNC 143
           IDTNGNG  RGHLIVNYQFVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of CmoCh05G012280 vs. TrEMBL
Match: A0A0A0LG76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010380 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.8e-64
Identity = 116/142 (81.69%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60
           MEK SI+MIL LALGVLSLANAQSA NVRATYHLYNPQ+INWDY++ASV+CATWDANKP+
Sbjct: 1   MEKGSIVMILLLALGVLSLANAQSATNVRATYHLYNPQNINWDYMKASVYCATWDANKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120
           EWRR+Y WTAFCGPVGPRGQASCGRCL+VTN ET AS  VRIVDQC+NGGLDLD+  FK 
Sbjct: 61  EWRRRYDWTAFCGPVGPRGQASCGRCLKVTNVETKASTTVRIVDQCSNGGLDLDIKPFKA 120

Query: 121 IDTNGNGVFRGHLIVNYQFVNC 143
           IDTNGNG   GHL VNY+FVNC
Sbjct: 121 IDTNGNGYKNGHLKVNYEFVNC 142

[Close]

BLAST of CmoCh05G012280 vs. TrEMBL
Match: A0A072VMG3_MEDTR (Chitinase / Hevein / PR-4 / Wheatwin2 OS=Medicago truncatula GN=MTR_1g080810 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-55
Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 1


Query: 7   LMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPIEWRRQY 66
           L++    +G++ L + QSAN VR+TYHLYNPQ+INWDY RASV+CATWDAN+P+EWR++Y
Sbjct: 10  LLVFCFLVGMM-LVSGQSANGVRSTYHLYNPQNINWDYNRASVYCATWDANQPLEWRKKY 69

Query: 67  GWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKRIDTNGN 126
           GWTAFCGP GPRG+ SCG+CLRV NT TGA E VRIVDQCANGGLDLDVNVFKRIDTNG 
Sbjct: 70  GWTAFCGPQGPRGRDSCGKCLRVKNTATGAQETVRIVDQCANGGLDLDVNVFKRIDTNGQ 129

Query: 127 GVFRGHLIVNYQFVNC 143
           G  +GHLIV+Y FVNC
Sbjct: 130 GYQKGHLIVDYVFVNC 144

[Close]

BLAST of CmoCh05G012280 vs. TrEMBL
Match: A0A061F129_THECC (Pathogenesis-related protein P2 OS=Theobroma cacao GN=TCM_026324 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-55
Identity = 101/142 (71.13%), Postives = 118/142 (83.10%), Query Frame = 1


Query: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60
           ME+  IL++  L    ++ A AQSA+NVRATYHLYNP+  NWD    S FCATWDANKP+
Sbjct: 3   MERFCILLLACL----VASAAAQSASNVRATYHLYNPEQNNWDLTAVSAFCATWDANKPL 62

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120
           EWRR+YGWTAFCGP GPRGQA+CGRCLRVTNT TGA   VRIVDQC+NGGLDLDVNVF++
Sbjct: 63  EWRRKYGWTAFCGPAGPRGQAACGRCLRVTNTGTGAQATVRIVDQCSNGGLDLDVNVFRQ 122

Query: 121 IDTNGNGVFRGHLIVNYQFVNC 143
           +DTNGNG+ +GHLIVNY FV+C
Sbjct: 123 LDTNGNGIAQGHLIVNYDFVDC 140

[Close]

BLAST of CmoCh05G012280 vs. TrEMBL
Match: I3SZI9_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.9e-55
Identity = 99/136 (72.79%), Postives = 118/136 (86.76%), Query Frame = 1


Query: 7   LMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPIEWRRQY 66
           L++    +G++S++  QSAN VR+TYHLYNPQ+INWDY RASV+CATWDAN+P+EWR++Y
Sbjct: 10  LLVFCFLVGMMSVSG-QSANGVRSTYHLYNPQNINWDYNRASVYCATWDANQPLEWRKKY 69

Query: 67  GWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKRIDTNGN 126
           GWTAFCGP GPRG+ SCG+CLRV NT TGA E VRIVDQCANGGLDLDV+VFKRIDTNG 
Sbjct: 70  GWTAFCGPQGPRGRDSCGKCLRVKNTATGAQETVRIVDQCANGGLDLDVDVFKRIDTNGQ 129

Query: 127 GVFRGHLIVNYQFVNC 143
           G  +GHLIV+Y FVNC
Sbjct: 130 GYQKGHLIVDYVFVNC 144

[Close]

BLAST of CmoCh05G012280 vs. TAIR10
Match: AT3G04720.1 (AT3G04720.1 pathogenesis-related 4)

HSP 1 Score: 190.3 bits (482), Expect = 8.3e-49
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 1


Query: 23  QSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPIEWRRQYGWTAFCGPVGPRGQAS 82
           +SA+NVRATYH YNP   NWD    S +C+TWDA+KP  WR +YGWTAFCGP GPRGQAS
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 83  CGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKRIDTNGNGVFRGHLIVNYQFVNC 142
           CG+CLRV NT T A+  VRIVDQC+NGGLDLDV +F +IDT+G G  +GHLIV+YQFV+C
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

[Close]

BLAST of CmoCh05G012280 vs. NCBI nr
Match: gi|659070649|ref|XP_008456018.1| (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 131/142 (92.25%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60
           MEK SI+MIL LALGVLSLANAQSA NVRATYHLYNPQDINWDYLRASVFCATWDANKP+
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGVFRGHLIVNYQFVNC 143
           IDTNGNG FRGHL VNYQFVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of CmoCh05G012280 vs. NCBI nr
Match: gi|449442941|ref|XP_004139239.1| (PREDICTED: pathogenesis-related protein PR-4 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 130/142 (91.55%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60
           M K SI+MIL LALGVLSLANAQSA NVRATYHLYNPQDINWDYLRASVFCATWDA+KP+
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120
           EWRRQYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGVFRGHLIVNYQFVNC 143
           IDTNGNG  RGHLIVNYQFVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of CmoCh05G012280 vs. NCBI nr
Match: gi|449442937|ref|XP_004139237.1| (PREDICTED: pathogenesis-related protein PR-4A-like [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 116/142 (81.69%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60
           MEK SI+MIL LALGVLSLANAQSA NVRATYHLYNPQ+INWDY++ASV+CATWDANKP+
Sbjct: 1   MEKGSIVMILLLALGVLSLANAQSATNVRATYHLYNPQNINWDYMKASVYCATWDANKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120
           EWRR+Y WTAFCGPVGPRGQASCGRCL+VTN ET AS  VRIVDQC+NGGLDLD+  FK 
Sbjct: 61  EWRRRYDWTAFCGPVGPRGQASCGRCLKVTNVETKASTTVRIVDQCSNGGLDLDIKPFKA 120

Query: 121 IDTNGNGVFRGHLIVNYQFVNC 143
           IDTNGNG   GHL VNY+FVNC
Sbjct: 121 IDTNGNGYKNGHLKVNYEFVNC 142

[Close]

BLAST of CmoCh05G012280 vs. NCBI nr
Match: gi|659070651|ref|XP_008456027.1| (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 4.6e-57
Identity = 106/142 (74.65%), Postives = 120/142 (84.51%), Query Frame = 1


Query: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60
           MEK SI+MIL LALGVLSLANAQSA NV ATYHLYNPQ INWDY +A+V+CATWDANKP 
Sbjct: 1   MEKESIVMILLLALGVLSLANAQSATNVTATYHLYNPQIINWDYTKANVYCATWDANKPF 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120
           EWR +YGWTAFCGPVGP GQASCGRC +VTN ET AS IVRIVD+C+ GG DLDV VF R
Sbjct: 61  EWRSRYGWTAFCGPVGPHGQASCGRCTKVTNAETKASTIVRIVDECSYGGFDLDVGVFMR 120

Query: 121 IDTNGNGVFRGHLIVNYQFVNC 143
           +DT+G G   G ++VNY+FV+C
Sbjct: 121 LDTDGIGSTNGFIMVNYEFVDC 142

[Close]

BLAST of CmoCh05G012280 vs. NCBI nr
Match: gi|922403683|ref|XP_013468975.1| (Chitinase / Hevein / PR-4 / Wheatwin2 [Medicago truncatula])

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 1


Query: 7   LMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPIEWRRQY 66
           L++    +G++ L + QSAN VR+TYHLYNPQ+INWDY RASV+CATWDAN+P+EWR++Y
Sbjct: 10  LLVFCFLVGMM-LVSGQSANGVRSTYHLYNPQNINWDYNRASVYCATWDANQPLEWRKKY 69

Query: 67  GWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKRIDTNGN 126
           GWTAFCGP GPRG+ SCG+CLRV NT TGA E VRIVDQCANGGLDLDVNVFKRIDTNG 
Sbjct: 70  GWTAFCGPQGPRGRDSCGKCLRVKNTATGAQETVRIVDQCANGGLDLDVNVFKRIDTNGQ 129

Query: 127 GVFRGHLIVNYQFVNC 143
           G  +GHLIV+Y FVNC
Sbjct: 130 GYQKGHLIVDYVFVNC 144

The following BLAST results are available for this feature:

BLAST of CmoCh05G012280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRP2_SOLLC	1.3e-56	71.33	Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1	[more]
PR4B_TOBAC	7.3e-55	67.59	Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1	[more]
PR4A_TOBAC	1.2e-54	67.59	Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1	[more]
WIN1_SOLTU	2.3e-53	73.95	Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1	[more]
WIN2_SOLTU	1.3e-51	73.11	Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1	[more]

BLAST of CmoCh05G012280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIC8_CUCSA	1.7e-71	91.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010390 PE=4 SV=1	[more]
A0A0A0LG76_CUCSA	7.8e-64	81.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010380 PE=4 SV=1	[more]
A0A072VMG3_MEDTR	1.3e-55	73.53	Chitinase / Hevein / PR-4 / Wheatwin2 OS=Medicago truncatula GN=MTR_1g080810 PE=...	[more]
A0A061F129_THECC	1.7e-55	71.13	Pathogenesis-related protein P2 OS=Theobroma cacao GN=TCM_026324 PE=4 SV=1	[more]
I3SZI9_MEDTR	3.9e-55	72.79	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]

BLAST of CmoCh05G012280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04720.1	8.3e-49	68.33	pathogenesis-related 4	[more]

BLAST of CmoCh05G012280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070649\|ref\|XP_008456018.1\|	2.3e-72	92.25	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo]	[more]
gi\|449442941\|ref\|XP_004139239.1\|	2.5e-71	91.55	PREDICTED: pathogenesis-related protein PR-4 [Cucumis sativus]	[more]
gi\|449442937\|ref\|XP_004139237.1\|	1.1e-63	81.69	PREDICTED: pathogenesis-related protein PR-4A-like [Cucumis sativus]	[more]
gi\|659070651\|ref\|XP_008456027.1\|	4.6e-57	74.65	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo]	[more]
gi\|922403683\|ref\|XP_013468975.1\|	1.9e-55	73.53	Chitinase / Hevein / PR-4 / Wheatwin2 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001153	Barwin_dom
IPR009009	RlpA-like_DPBB
IPR018226	Barwin_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0042742	defense response to bacterium
GO:0050832	defense response to fungus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G012280.1	CmoCh05G012280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001153	Barwin domain	PRODOM	PD004535		coord: 31..142 score: 3.0
IPR001153	Barwin domain	PRINTS	PR00602	BARWIN	coord: 117..141 score: 5.6E-42coord: 58..76 score: 5.6E-42coord: 96..114 score: 5.6E-42coord: 77..95 score: 5.6
IPR001153	Barwin domain	PFAM	PF00967	Barwin	coord: 24..142 score: 1.2
IPR001153	Barwin domain	PROFILE	PS51174	BARWIN_3	coord: 23..142 score: 79
IPR009009	RlpA-like protein, double-psi beta-barrel domain	GENE3D	G3DSA:2.40.40.10		coord: 24..142 score: 7.7
IPR009009	RlpA-like protein, double-psi beta-barrel domain	unknown	SSF50685	Barwin-like endoglucanases	coord: 24..142 score: 2.27
IPR018226	Barwin, conserved site	PROSITE	PS00771	BARWIN_1	coord: 83..91 scor
IPR018226	Barwin, conserved site	PROSITE	PS00772	BARWIN_2	coord: 135..142 scor
None	No IPR available	PANTHER	PTHR22595	CHITINASE-RELATED	coord: 1..142 score: 9.2
None	No IPR available	PANTHER	PTHR22595:SF62	HEVEIN-LIKE PREPROPROTEIN	coord: 1..142 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G012280	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G012280	Cucumber (Chinese Long) v3	cmocucB0950
CmoCh05G012280	Watermelon (97103) v2	cmowmbB785
CmoCh05G012280	Watermelon (97103) v2	cmowmbB805
CmoCh05G012280	Wax gourd	cmowgoB0919
CmoCh05G012280	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh05G012280	Cucurbita moschata (Rifu)	cmocmoB305
CmoCh05G012280	Cucumber (Gy14) v1	cgycmoB0362
CmoCh05G012280	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G012280	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G012280	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G012280	Cucumber (Chinese Long) v2	cmocuB783
CmoCh05G012280	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G012280	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G012280	Watermelon (97103) v1	cmowmB757
CmoCh05G012280	Cucurbita pepo (Zucchini)	cmocpeB714
CmoCh05G012280	Cucurbita pepo (Zucchini)	cmocpeB717
CmoCh05G012280	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G012280	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G012280	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G012280	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G012280	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G012280	Silver-seed gourd	carcmoB0974
CmoCh05G012280	Silver-seed gourd	carcmoB1442