CmoCh05G011780 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G011780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransposon Ty1-OL Gag-Pol polyprotein
LocationCmo_Chr05 : 9267906 .. 9271860 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACCATGTCTTGTTCCTCCTCTCCATCCACCATCTCCAACACCGTCACTCGTGCTCGCACTACTCAGATTCGTGTTGAGCTCGCCACGTCCAAGAAACGAGATCAATCTGCTGCAAATTATTTTTGCAAGATCAAAGGGCTAGCCACCGAGCTGGCCGCCGCCGGCTCTGCCTTGCAGGATGATGATGTGATCGCGTATCTTCTCGCTGGTCTTGGCCCAGACTATGATCCCTTCGTCACCTCAATGACTACCAAGAGTGAAGCCCTCACGCTTGATGATGTGTTTGCACATCTAATGATGTATGAAGCTCACCAACTACAACACCAGGCTGAACTTCAGTTAAATTCGGGATCTTCGGCCAATTATACTGGTCGTGCTGAACTTCAGTTAAATCTTGGATCTTCTGCCAATTATGCTAGTCGTGGTGGTCAGCAAAAGAATCGTGGGCGTAGGGATCGTGGTCGTGGTCGTTCTCAAGGTTATGCACCCTCTCGTCCTGCTGGTGATCGTCGTGGCCCTTCTGCTCGTCCTTCCTGCCAGATCTGCGGCAAAGTGGGGCATACTGCTATACGCTGCTGGCATAGGATGGATGAGTCCTATCAAGATGAACCTTCTTCTGCTCCTCCTACGGCACTGGCGGCTACTTCCTCTTACAAGATTGACCCAAATTGGTACAGCGACACAGGCGCTACGGACCATATCACCAGTGACCTGGATCGTCTCGCTGTGCATGAACATTATCATGGAGGTGAACAAGTTCAAGTCGGCAATGGAGCAAGTTTGCGTGTTTTGCATACTGGTCATTCTCTAATTAATACTGCTACTCGTTCTCTTGCGTTGCGTAATATTTTGCATGTGATTGAAATTTCTAAACATCTTCTTTCCGTTCATAAATTTTCTCGTGATAATGACGTATTTTTTGAATTCGATCCTTGGCATTTTTCTATAAAGGATCGACAGTCGAGGAAAAGTCTCCTAAATGGGAGGTGTGAATCTGGTCTTTATCCTATTAAGCCATCCGATGTCGATAATCTCAAGCACGTCTTGGTGAGTAGATCTACTACTCACGCCCAATGGCATGCACGTCTTGGACATCCTTCATCTCAAGTAGTAAAATCCATTTTGCGTCTAAATAATATTTCGTGTGCTAGTGAGTCATCTTTGTCCGTTTGTAATGCGTGTTAGTTAGCAAAGAGTCATTAATTACCATATACTAGTTCTTCCCATAGGTCTTCGTCACCTTTGGAACTTATTTTTTCGGATGTTTGGGGCCCTGCACCTCCATCTGTTGGGGGTTTTAAATATTATATTAGTTTCATTGATGATTTCAGTAAATTTTCGTGGATCGATTTGATGCATGATCGTACAGAAGCTCCTCGTATATTTTTGCAATTCCAAGCTCATGTTGAGTGTCTCATAGATACTAAAATCAAGTGGGTCCAATCTAATTGGGGTGGGGAATATCAGAAAATTCATAACACATTTTTTCGTTCCCTTGGAATTGGTCATCGTGTTTCGTGCCCTCACACACATCAACAAAATGGGTCTGCTGAACGCAAGCACCGTCATATTGTTGAAACTGGCCTAGCCCTTCTAGCTCATGCTCATGTACCTATTAAATTTTGGGATGACGTGTTTCTTATAGCCACATATCTCATCAATCGTCTTCCTACTCGTGTCATCGATAAAAAATGCCCCTTAGAGCTTCTTTTTCATACCCCACCAAATTACTCCTTATTAAAAAATTTTGGGTGTGCTTGTTGGCCTCATCTTCGTCCTTATAACAAACAAAAGCTCTCTTTTCGATCAAAGGAATGTGTCTTTCTAGGCTACAGTTCTTCACATAAGGGGTATAAGTGTCTTGACACCGATTCTGGTCGTGTCTATATGTCTAGAGATGTCATATTTGATGAAAATGTTTTTCCATTCAAGAGAGCCCGACCTAATTCTTCCCCAACCATGCAGTCGACGCATAATGCCCTTGATTTGTGCACCTTGCATTTGGGTAATAGCAGTACTAATTTGGAGAATGATCACATGCATATGTCTGGGCCTACTAACTCTTTGGATGCAGAAAATTTGGTGTCTACATCAGCTTCGGAATTGCCGCAACAATCCTCCGCGTCGCTGCCATGCGAATCGGCGTTGGTTGTTCCGCCAATGATTGAGGCCTCGGCTCCTCCGCCAGCAGATGATATTGCACAATGCCCGGTCGAATCCTCGGCTGCTGGTCAACCAACTGTTGTAGCATCGGTTGCTCCCCTCGCAACGACTGATACGGCCATCCCCTCAATGTGGATCCTGCACCTACTACTCATCCGTATGGTACTCGATTGAAGCACAATATCAAGAAACCCAAGGTGCGTACAGATGGAACAGTAACATATCTTGTAGCTCGGTCTTCTGCCTCTGAACCTACTTCACATATTATTGCTATGGAGCATCCCCTCTGGCGTCAGGCAATGAATGATGAATTTCAGGCACTTCAAAAAAATAAGACATGGCACTTAGTTTCTCCTCGTGCTGGTCTCAACGTTATTGATTGCAAATGGGTTTTCAAACTCAAGCAAAAGCCAGATGGCTCTATTGATCGCTACAAAGCACGCCTGGTTGCTAAAGGTTTTAAACAGCAGGCGTTGATTATGATGATACCTTTAGTCCAATTGTTAAGCCCACTACCATTCGACTCTTATTATCTCTTGCTATTTCTCGTGGTTGGGCTATTCGGCAGATTGATATTCAAAATGCTTTTCTTCATGGCTTTCTTAATGAAGATGTTTATATGAAGCAGCCCCCTGGATTTGTGGATTCTCAACACCCTGGTTATCTCTGCAAGCTGGATAAGTCGCTTTATGGCCTTAAACAAGCTCCGCGTGCCTGGTTTTCTCGCCTTAGCTCCAAACAATTACAGCTGGATTTTACACCTTCAAAGGCTGATGTCTCTCTTTTCATTTTTAACAAAACGGGCATTCAGATGTATATCCTCATCTACGTTGATGACATTATTATCATCAGCTCATCTTCTACGGCTATTGAGAAACTTCTTACACAACTTCAGGATGATTTTGTCGTCAAGGATCTTGGTCTTTTGAGTTATTTTCTTGGGATTGAGGTCCGCCATACTTCCAGTGGACTTATTCTGACACAACATAAATACATTCGAGATTTATTAGCCAGAACCGATATGCTCACCTCCAAAGGTGTGCCCACACCTATGCTTCCCAGTGAGAAGTTGTTATTGAATGGTGGTAAAAAGCTCTCACCTGAGGATACTACTCGCTATCGAAGTGTCGTTGGTGCTCTCCAATATTTGTCTCTGACACGTCCTGATATATCCTTTTGTGTCAACAGAGTGTGTCAGTTCATGTCCTCTCCGACTTCTATACATTGGGCGACAGTCAAACGAATTCTCCGTTATCTACATGACACTATTGATATGAGTTTGTGTCTTACAAAGTCCAGCACTGATTTGTTGAGTGCCTTTTCAGATGCTGATTGGGCTGGGAATCCTGATGATCGTCGAAGCACTGGAGGCTATGTGATCTTCTTTGGTGGCAATCTTATCTCTTGGAGTTCGAGGAAACAATCGACAGTATCTCGTTCTAGTATGGAAGCCGAATATAAGGCGGTTGCTGATGCCACTGCCGAATTAATTTGGATCCAAGTCCTCTTGCGTGAGCTCGGGATCTCGCAAGCGCGAGCGCGTAGCCTATGGTGTGACAACATTGGTGCCACCTACCTATCCGCCAATCCAATCTTTCATCGACGGACGAAGCATGTTGAGGTTGATTATCACTTCGTTCGTGAACGAGTATCGACTCGTCAGCTTGATGTTCGAGTCATATCTTCCAAGGATCAGCTCGCCGATATCATGACAAAGCCACTGCCAGCTCCTTCTTTTAGCTATTTTAGGCGCCATCTGAACTTAGTAGTACATCGTCCAGATTGA

mRNA sequence

ATGTCTACCATGTCTTGTTCCTCCTCTCCATCCACCATCTCCAACACCGTCACTCGTGCTCGCACTACTCAGATTCGTGTTGAGCTCGCCACGTCCAAGAAACGAGATCAATCTGCTGCAAATTATTTTTGCAAGATCAAAGGGCTAGCCACCGAGCTGGCCGCCGCCGGCTCTGCCTTGCAGGATGATGATGTGATCGCGTATCTTCTCGCTGGTCTTGGCCCAGACTATGATCCCTTCGTCACCTCAATGACTACCAAGAGTGAAGCCCTCACGCTTGATGATGTGTTTGCACATCTAATGATGTATGAAGCTCACCAACTACAACACCAGGCTGAACTTCAGTTAAATTCGGGATCTTCGGCCAATTATACTGGTCGTGCTGAACTTCAGTTAAATCTTGGATCTTCTGCCAATTATGCTAGTCGTGGTGGTCAGCAAAAGAATCGTGGGCGTAGGGATCGTGGTCGTGGTCGTTCTCAAGGTTATGCACCCTCTCGTCCTGCTGGTGATCGTCGTGGCCCTTCTGCTCGTCCTTCCTGCCAGATCTGCGGCAAAGTGGGGCATACTGCTATACGCTGCTGGCATAGGATGGATGAGTCCTATCAAGATGAACCTTCTTCTGCTCCTCCTACGGCACTGGCGGCTACTTCCTCTTACAAGATTGACCCAAATTGGTACAGCGACACAGGCGCTACGGACCATATCACCAGTGACCTGGATCGTCTCGCTGTGCATGAACATTATCATGGAGGTGAACAAGTTCAAGTCGGCAATGGAGCAAGTTTGCGTGTTTTGCATACTGGTCATTCTCTAATTAATACTGCTACTCGTTCTCTTGCGTTGCGTAATATTTTGCATGTGATTGAAATTTCTAAACATCTTCTTTCCGTTCATAAATTTTCTCGTGATAATGACGTATTTTTTGAATTCGATCCTTGGCATTTTTCTATAAAGGATCGACAGTCGAGGAAAAGTCTCCTAAATGGGAGGTGTGAATCTGGTCTTTATCCTATTAAGCCATCCGATGTCGATAATCTCAAGCACGTCTTGGTGAGTAGATCTACTACTCACGCCCAATGGCATGCACGTCTTGGACATCCTTCATCTCAAGTAGTAAAATCCATTTTGCGTCTAAATAATATTTCGTGTGCTAGCTACAGTTCTTCACATAAGGGGTATAAGTGTCTTGACACCGATTCTGGTCGTGTCTATATGTCTAGAGATGTCATATTTGATGAAAATGTTTTTCCATTCAAGAGAGCCCGACCTAATTCTTCCCCAACCATGCAGTCGACGCATAATGCCCTTGATTTGTGCACCTTGCATTTGGGTAATAGCAGTACTAATTTGGAGAATGATCACATGCATATGTCTGGGCCTACTAACTCTTTGGATGCAGAAAATTTGGTGTCTACATCAGCTTCGGAATTGCCGCAACAATCCTCCGCGTCGCTGCCATGCGAATCGGCGTTGGTTGTTCCGCCAATGATTGAGGCCTCGGCTCCTCCGCCAGCAGATGATATTGCACAATGCCCGGTCGAATCCTCGGCTGCTGGTCAACCAACTGTTGTAGCATCGGTTGCTCCCCTCGCAACGACTGATACGGCCATCCCCTCAATGTGGATCCTGCACCTACTACTCATCCCTCGGTCTTCTGCCTCTGAACCTACTTCACATATTATTGCTATGGAGCATCCCCTCTGGCGTCAGGCAATGAATGATGAATTTCAGGCACTTCAAAAAAATAAGACATGGCACTTAGTTTCTCCTCGTGCTGGTCTCAACGTTATTGATTGCAAATGGGTTTTCAAACTCAAGCAAAAGCCAGATGGCTCTATTGATCGCTACAAAGCACGCCTGATTGATATTCAAAATGCTTTTCTTCATGGCTTTCTTAATGAAGATGTTTATATGAAGCAGCCCCCTGGATTTGTGGATTCTCAACACCCTGGTTATCTCTGCAAGCTGGATAAGTCGCTTTATGGCCTTAAACAAGCTCCGCGTGCCTGGTTTTCTCGCCTTAGCTCCAAACAATTACAGCTGGATTTTACACCTTCAAAGGCTGATGTCTCTCTTTTCATTTTTAACAAAACGGGCATTCAGATGTATATCCTCATCTACGTTGATGACATTATTATCATCAGCTCATCTTCTACGGCTATTGAGAAACTTCTTACACAACTTCAGGATGATTTTGTCGTCAAGGATCTTGGTCTTTTGAGTTATTTTCTTGGGATTGAGGTCCGCCATACTTCCAGTGGACTTATTCTGACACAACATAAATACATTCGAGATTTATTAGCCAGAACCGATATGCTCACCTCCAAAGGTGTGCCCACACCTATGCTTCCCAGTGAGAAGTTGTTATTGAATGGTGGTAAAAAGCTCTCACCTGAGGATACTACTCGCTATCGAAGTGTCGTTGGTGCTCTCCAATATTTGTCTCTGACACGTCCTGATATATCCTTTTGTGTCAACAGAGTGTGTCAGTTCATGTCCTCTCCGACTTCTATACATTGGGCGACAGTCAAACGAATTCTCCGTTATCTACATGACACTATTGATATGAGTTTGTGTCTTACAAAGTCCAGCACTGATTTGTTGAGTGCCTTTTCAGATGCTGATTGGGCTGGGAATCCTGATGATCGTCGAAGCACTGGAGGCTATGTGATCTTCTTTGGTGGCAATCTTATCTCTTGGAGTTCGAGGAAACAATCGACAGTATCTCGTTCTAGTATGGAAGCCGAATATAAGGCGGTTGCTGATGCCACTGCCGAATTAATTTGGATCCAAGTCCTCTTGCGTGAGCTCGGGATCTCGCAAGCGCGAGCGCGTAGCCTATGGTGTGACAACATTGGTGCCACCTACCTATCCGCCAATCCAATCTTTCATCGACGGACGAAGCATGTTGAGGTTGATTATCACTTCGTTCGTGAACGAGTATCGACTCGTCAGCTTGATGTTCGAGTCATATCTTCCAAGGATCAGCTCGCCGATATCATGACAAAGCCACTGCCAGCTCCTTCTTTTAGCTATTTTAGGCGCCATCTGAACTTAGTAGTACATCGTCCAGATTGA

Coding sequence (CDS)

ATGTCTACCATGTCTTGTTCCTCCTCTCCATCCACCATCTCCAACACCGTCACTCGTGCTCGCACTACTCAGATTCGTGTTGAGCTCGCCACGTCCAAGAAACGAGATCAATCTGCTGCAAATTATTTTTGCAAGATCAAAGGGCTAGCCACCGAGCTGGCCGCCGCCGGCTCTGCCTTGCAGGATGATGATGTGATCGCGTATCTTCTCGCTGGTCTTGGCCCAGACTATGATCCCTTCGTCACCTCAATGACTACCAAGAGTGAAGCCCTCACGCTTGATGATGTGTTTGCACATCTAATGATGTATGAAGCTCACCAACTACAACACCAGGCTGAACTTCAGTTAAATTCGGGATCTTCGGCCAATTATACTGGTCGTGCTGAACTTCAGTTAAATCTTGGATCTTCTGCCAATTATGCTAGTCGTGGTGGTCAGCAAAAGAATCGTGGGCGTAGGGATCGTGGTCGTGGTCGTTCTCAAGGTTATGCACCCTCTCGTCCTGCTGGTGATCGTCGTGGCCCTTCTGCTCGTCCTTCCTGCCAGATCTGCGGCAAAGTGGGGCATACTGCTATACGCTGCTGGCATAGGATGGATGAGTCCTATCAAGATGAACCTTCTTCTGCTCCTCCTACGGCACTGGCGGCTACTTCCTCTTACAAGATTGACCCAAATTGGTACAGCGACACAGGCGCTACGGACCATATCACCAGTGACCTGGATCGTCTCGCTGTGCATGAACATTATCATGGAGGTGAACAAGTTCAAGTCGGCAATGGAGCAAGTTTGCGTGTTTTGCATACTGGTCATTCTCTAATTAATACTGCTACTCGTTCTCTTGCGTTGCGTAATATTTTGCATGTGATTGAAATTTCTAAACATCTTCTTTCCGTTCATAAATTTTCTCGTGATAATGACGTATTTTTTGAATTCGATCCTTGGCATTTTTCTATAAAGGATCGACAGTCGAGGAAAAGTCTCCTAAATGGGAGGTGTGAATCTGGTCTTTATCCTATTAAGCCATCCGATGTCGATAATCTCAAGCACGTCTTGGTGAGTAGATCTACTACTCACGCCCAATGGCATGCACGTCTTGGACATCCTTCATCTCAAGTAGTAAAATCCATTTTGCGTCTAAATAATATTTCGTGTGCTAGCTACAGTTCTTCACATAAGGGGTATAAGTGTCTTGACACCGATTCTGGTCGTGTCTATATGTCTAGAGATGTCATATTTGATGAAAATGTTTTTCCATTCAAGAGAGCCCGACCTAATTCTTCCCCAACCATGCAGTCGACGCATAATGCCCTTGATTTGTGCACCTTGCATTTGGGTAATAGCAGTACTAATTTGGAGAATGATCACATGCATATGTCTGGGCCTACTAACTCTTTGGATGCAGAAAATTTGGTGTCTACATCAGCTTCGGAATTGCCGCAACAATCCTCCGCGTCGCTGCCATGCGAATCGGCGTTGGTTGTTCCGCCAATGATTGAGGCCTCGGCTCCTCCGCCAGCAGATGATATTGCACAATGCCCGGTCGAATCCTCGGCTGCTGGTCAACCAACTGTTGTAGCATCGGTTGCTCCCCTCGCAACGACTGATACGGCCATCCCCTCAATGTGGATCCTGCACCTACTACTCATCCCTCGGTCTTCTGCCTCTGAACCTACTTCACATATTATTGCTATGGAGCATCCCCTCTGGCGTCAGGCAATGAATGATGAATTTCAGGCACTTCAAAAAAATAAGACATGGCACTTAGTTTCTCCTCGTGCTGGTCTCAACGTTATTGATTGCAAATGGGTTTTCAAACTCAAGCAAAAGCCAGATGGCTCTATTGATCGCTACAAAGCACGCCTGATTGATATTCAAAATGCTTTTCTTCATGGCTTTCTTAATGAAGATGTTTATATGAAGCAGCCCCCTGGATTTGTGGATTCTCAACACCCTGGTTATCTCTGCAAGCTGGATAAGTCGCTTTATGGCCTTAAACAAGCTCCGCGTGCCTGGTTTTCTCGCCTTAGCTCCAAACAATTACAGCTGGATTTTACACCTTCAAAGGCTGATGTCTCTCTTTTCATTTTTAACAAAACGGGCATTCAGATGTATATCCTCATCTACGTTGATGACATTATTATCATCAGCTCATCTTCTACGGCTATTGAGAAACTTCTTACACAACTTCAGGATGATTTTGTCGTCAAGGATCTTGGTCTTTTGAGTTATTTTCTTGGGATTGAGGTCCGCCATACTTCCAGTGGACTTATTCTGACACAACATAAATACATTCGAGATTTATTAGCCAGAACCGATATGCTCACCTCCAAAGGTGTGCCCACACCTATGCTTCCCAGTGAGAAGTTGTTATTGAATGGTGGTAAAAAGCTCTCACCTGAGGATACTACTCGCTATCGAAGTGTCGTTGGTGCTCTCCAATATTTGTCTCTGACACGTCCTGATATATCCTTTTGTGTCAACAGAGTGTGTCAGTTCATGTCCTCTCCGACTTCTATACATTGGGCGACAGTCAAACGAATTCTCCGTTATCTACATGACACTATTGATATGAGTTTGTGTCTTACAAAGTCCAGCACTGATTTGTTGAGTGCCTTTTCAGATGCTGATTGGGCTGGGAATCCTGATGATCGTCGAAGCACTGGAGGCTATGTGATCTTCTTTGGTGGCAATCTTATCTCTTGGAGTTCGAGGAAACAATCGACAGTATCTCGTTCTAGTATGGAAGCCGAATATAAGGCGGTTGCTGATGCCACTGCCGAATTAATTTGGATCCAAGTCCTCTTGCGTGAGCTCGGGATCTCGCAAGCGCGAGCGCGTAGCCTATGGTGTGACAACATTGGTGCCACCTACCTATCCGCCAATCCAATCTTTCATCGACGGACGAAGCATGTTGAGGTTGATTATCACTTCGTTCGTGAACGAGTATCGACTCGTCAGCTTGATGTTCGAGTCATATCTTCCAAGGATCAGCTCGCCGATATCATGACAAAGCCACTGCCAGCTCCTTCTTTTAGCTATTTTAGGCGCCATCTGAACTTAGTAGTACATCGTCCAGATTGA
Homology
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BLAST of CmoCh05G011780 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.1e-71
Identity = 181/518 (34.94%), Postives = 262/518 (50.58%), Query Frame = 1 

Query: 552  SSASEPTSHIIAMEHPLWRQ---AMNDEFQALQKNKTWHLVSPRAGLNVIDC-------- 611
            S   EP S    + HP   Q   AM +E ++LQKN T+ LV    G   + C        
Sbjct: 806  SDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKK 865

Query: 612  -----------KWVFK-LKQKPDGSIDRY----------------------KARLIDIQN 671
                       + V K  +QK     D                        +   +D++ 
Sbjct: 866  DGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKT 925

Query: 672  AFLHGFLNEDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTP 731
            AFLHG L E++YM+QP GF  +     +CKL+KSLYGLKQAPR W+ +  S      +  
Sbjct: 926  AFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLK 985

Query: 732  SKADVSLFI--FNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYF 791
            + +D  ++   F++    + +L+YVDD++I+      I KL   L   F +KDLG     
Sbjct: 986  TYSDPCVYFKRFSENNF-IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQI 1045

Query: 792  LGIEV--RHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDT 851
            LG+++    TS  L L+Q KYI  +L R +M  +K V TP+    KL     KK+ P   
Sbjct: 1046 LGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKL----SKKMCPTTV 1105

Query: 852  TR--------YRSVVGALQY-LSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHD 911
                      Y S VG+L Y +  TRPDI+  V  V +F+ +P   HW  VK ILRYL  
Sbjct: 1106 EEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRG 1165

Query: 912  TIDMSLCLTKSSTDLLSAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQSTVSRSS 971
            T    LC    S  +L  ++DAD AG+ D+R+S+ GY+  F G  ISW S+ Q  V+ S+
Sbjct: 1166 TTGDCLCF-GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALST 1225

Query: 972  MEAEYKAVADATAELIWIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRTKHVEV 1012
             EAEY A  +   E+IW++  L+ELG+ Q +   ++CD+  A  LS N ++H RTKH++V
Sbjct: 1226 TEAEYIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDV 1285

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BLAST of CmoCh05G011780 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 271.2 bits (692), Expect = 4.7e-71
Identity = 152/411 (36.98%), Postives = 238/411 (57.91%), Query Frame = 1 

Query: 618  KARLIDIQNAFLHGFLNEDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSS 677
            K   +D++ AFL+G L E++YM+ P G   S +   +CKL+K++YGLKQA R WF     
Sbjct: 997  KVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQ 1056

Query: 678  KQLQLDFTPSKADVSLFIFNKTGIQ--MYILIYVDDIIIISSSSTAIEKLLTQLQDDFVV 737
               + +F  S  D  ++I +K  I   +Y+L+YVDD++I +   T +      L + F +
Sbjct: 1057 ALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRM 1116

Query: 738  KDLGLLSYFLGIEVRHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGK 797
             DL  + +F+GI +      + L+Q  Y++ +L++ +M     V TP LPS+   +N   
Sbjct: 1117 TDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTP-LPSK---INYEL 1176

Query: 798  KLSPED-TTRYRSVVGALQYLSL-TRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHD 857
              S ED  T  RS++G L Y+ L TRPD++  VN + ++ S   S  W  +KR+LRYL  
Sbjct: 1177 LNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKG 1236

Query: 858  TIDMSLCLTKSST--DLLSAFSDADWAGNPDDRRSTGGYVI-FFGGNLISWSSRKQSTVS 917
            TIDM L   K+    + +  + D+DWAG+  DR+ST GY+   F  NLI W++++Q++V+
Sbjct: 1237 TIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVA 1296

Query: 918  RSSMEAEYKAVADATAELIWIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRTKH 977
             SS EAEY A+ +A  E +W++ LL  + I       ++ DN G   ++ NP  H+R KH
Sbjct: 1297 ASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKH 1356

Query: 978  VEVDYHFVRERVSTRQLDVRVISSKDQLADIMTKPLPAPSFSYFRRHLNLV 1022
            +++ YHF RE+V    + +  I +++QLADI TKPLPA  F   R  L L+
Sbjct: 1357 IDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401

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BLAST of CmoCh05G011780 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-49
Identity = 109/228 (47.81%), Postives = 146/228 (64.04%), Query Frame = 1 

Query: 703 MYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEVRHTSSGLILTQHK 762
           MY+L+YVDDI++  SS+T +  L+ QL   F +KDLG + YFLGI+++   SGL L+Q K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 763 YIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVVGALQYLSLTRPDI 822
           Y   +L    ML  K + TP+       ++  K   P D   +RS+VGALQYL+LTRPDI
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD---FRSIVGALQYLTLTRPDI 120

Query: 823 SFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLLSAFSDADWAGNPD 882
           S+ VN VCQ M  PT   +  +KR+LRY+  TI   L + K+S   + AF D+DWAG   
Sbjct: 121 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 180

Query: 883 DRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELIW 931
            RRST G+  F G N+ISWS+++Q TVSRSS E EY+A+A   AEL W
Sbjct: 181 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh05G011780 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 4.2e-43
Identity = 101/310 (32.58%), Postives = 174/310 (56.13%), Query Frame = 1 

Query: 622 IDIQNAFLHGFLNEDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQ 681
           +D+  AFL+  ++E +Y+KQPPGFV+ ++P Y+ +L   +YGLKQAP  W   +++   +
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 682 LDFTPSKADVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLL 741
           + F   + +  L+  + +   +YI +YVDD+++ + S    +++  +L   + +KDLG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 742 SYFLGIEVRHTSSG-LILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPE 801
             FLG+ +  +S+G + L+   YI    + +++ T K   TP+  S+ L       L  +
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHL--K 180

Query: 802 DTTRYRSVVGALQYLSLT-RPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSL 861
           D T Y+S+VG L + + T RPDIS+ V+ + +F+  P +IH  + +R+LRYL+ T  M L
Sbjct: 181 DITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCL 240

Query: 862 CLTKSSTDLLSAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRK-QSTVSRSSMEAEY 921
                S   L+ + DA      D   STGGYV    G  ++WSS+K +  +   S EAEY
Sbjct: 241 KYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEY 300

Query: 922 KAVADATAEL 929
              ++   E+
Sbjct: 301 ITASETVMEI 308

[Close]
BLAST of CmoCh05G011780 vs. Swiss-Prot
Match: YD11B_YEAST (Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR1 PE=3 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-22
Identity = 107/420 (25.48%), Postives = 189/420 (45.00%), Query Frame = 1 

Query: 615  DRYKARLIDIQNAFLHGFLNEDVYMKQPP--GFVDSQHPGYLCKLDKSLYGLKQAPRAWF 674
            + Y    +DI +A+L+  + E++Y++ PP  G  D      L +L KSLYGLKQ+   W+
Sbjct: 1338 NNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK-----LIRLKKSLYGLKQSGANWY 1397

Query: 675  SRLSSKQLQLDFTPSKADVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDD 734
              + S  ++          S    N    Q+ I ++VDD+I+ S    A +K++T L+  
Sbjct: 1398 ETIKSYLIKQCGMEEVRGWSCVFKNS---QVTICLFVDDMILFSKDLNANKKIITTLKKQ 1457

Query: 735  FVVKDLGL------LSY-FLGIEVRHTSSGLI-LTQHKYIRDLLARTDM--------LTS 794
            +  K + L      + Y  LG+E+++  S  + L   K + + L + ++        L +
Sbjct: 1458 YDTKIINLGEGDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRA 1517

Query: 795  KGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVVGALQYLSLT-RPDISFCVNRVCQFMSS 854
             G P   +  ++L ++  +    E     + ++G   Y+    R D+ + +N + Q +  
Sbjct: 1518 PGQPGHYIDQDELEIDEDEY--KEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1577

Query: 855  PTSIHWATVKRILRYLHDTIDMSLCLTKSST----DLLSAFSDADWAGNPDDRRSTGGYV 914
            P+         +++++ DT D  L   K+      + L A SDA + GN    +S  G +
Sbjct: 1578 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGNI 1637

Query: 915  IFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELIWIQVLLRELGISQARARSLWCD 974
                G +I   S K S    S+ EAE  AV++A   L  +  L++EL        SL   
Sbjct: 1638 FLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKGSLTDS 1697

Query: 975  NIGATYLSANPIFHRRTKHVEVDYHFVRERVSTRQLDVRVISSKDQLADIMTKPLPAPSF 1012
                + + +      R +        +R+ VS   L V  I +K  +AD+MTKPLP  +F
Sbjct: 1698 RSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1746

[Close]
BLAST of CmoCh05G011780 vs. TrEMBL
Match: Q2QY49_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g03850 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.2e-150
Identity = 299/623 (47.99%), Postives = 393/623 (63.08%), Query Frame = 1 

Query: 450  NLENDHMHMSGPTNSLDAENLVSTSASELPQQSSASLPCESALVVPPMIEASAPPPADDI 509
            ++ + H    G T+S+   ++VS++A++    +  S       V  P    +A      I
Sbjct: 295  SITHPHDEPGGDTSSISPADVVSSAAADGMHATHGSATSSGGNVSSPHTFDAA----QQI 354

Query: 510  AQCPVESSAAGQPTVVASVAPLATTDTAIPSMWILHLLLIPRSSASEPTSHIIAMEHPLW 569
             Q PV  S  G         P   TD  +    +        +   EP+S   A+    W
Sbjct: 355  QQRPVTRSQHGVHR------PKKYTDGTVRYGCL--------TETGEPSSLQEALSSANW 414

Query: 570  RQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPDGSIDRYKARLIDIQNAFL 629
            +QAM+ EF AL  NKTWHLV P  G N+ID KWV+K+K+K DG+IDRYKARL+       
Sbjct: 415  KQAMDKEFSALLHNKTWHLVPPVKGKNIIDSKWVYKIKKKADGTIDRYKARLVAKGFKQR 474

Query: 630  HGFLNED------------------------------------------VYMKQPPGFVD 689
            +G   ED                                          VYM+QPPGF D
Sbjct: 475  YGIDYEDTFSPVVKAATIRLVLSIAMSQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFED 534

Query: 690  SQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPSKADVSLFIFNKTGIQMYILI 749
            ++ P +LCKLDK+LYGLKQAPRAW+SRLS K  +L F+ SKAD SLF +NK   +M++L+
Sbjct: 535  ARQPHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLV 594

Query: 750  YVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEVRHTSSGLILTQHKYIRDL 809
            YVDDII+ SSSS A+  LL  L+ DF +KDLG L YFLGIEV+ T   L+L+Q +Y  +L
Sbjct: 595  YVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTEL 654

Query: 810  LARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVVGALQYLSLTRPDISFCVN 869
            L R +M + K V TP+  +EKL +  G +L P D T+YRS+VGALQYL+LTRPDIS+ VN
Sbjct: 655  LERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISYSVN 714

Query: 870  RVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLLSAFSDADWAGNPD----- 929
            +VCQF+ +PT+ HW+ VKRILRYL  T+D+ L + KSS++L+SAFSDADWAG+ D     
Sbjct: 715  KVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADWAGSVDDRRST 774

Query: 930  ----DRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELIWIQVLLREL 989
                DRRSTGG+ +FFG NLISWS+RKQ+TVSRSS EAEYKA+A+A AE+IW++ LL EL
Sbjct: 775  GGFADRRSTGGFAVFFGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLLTEL 834

Query: 990  GISQARARSLWCDNIGATYLSANPIFHRRTKHVEVDYHFVRERVSTRQLDVRVISSKDQL 1022
            GI    A  LWCDN+GATY++ANP+FH RTKH+EVDYHFVRE+V+ + LD+  +SS+DQ+
Sbjct: 835  GILHPNAARLWCDNLGATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQDQV 894

[Close]
BLAST of CmoCh05G011780 vs. TrEMBL
Match: Q8W0X9_MAIZE (Putative copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=Z178A11.9 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.6e-150
Identity = 273/511 (53.42%), Postives = 351/511 (68.69%), Query Frame = 1 

Query: 552  SSASEPTSHIIAMEHPLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPD 611
            +S+ EP     A+    W+ AM+ E+ AL KNKTWHLV P+ G NVI CKWV+K+K+K D
Sbjct: 800  TSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKAD 859

Query: 612  GSIDRYKARL----------IDIQNAFLH----------------------------GFL 671
            GS+DRYKARL          ID  + F                               FL
Sbjct: 860  GSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFL 919

Query: 672  N----EDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPSKA 731
            +    E+VYM+QPPG+ DS    Y+CKLDK+LYGLKQAPRAW+SRLS+K L L F  SKA
Sbjct: 920  HGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKA 979

Query: 732  DVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEV 791
            D SLF +NK  + +++L+YVDDII+ SS+  A E LL+ L  +F +KDLG L+YFLGIEV
Sbjct: 980  DTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEV 1039

Query: 792  RHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVV 851
                 G+ILTQ KY  DLL +  M   K + TP+  SEKL ++ G  L  +D T+YRS+V
Sbjct: 1040 NKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIV 1099

Query: 852  GALQYLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLL 911
            GALQYL+LTRPDI+F VN+VCQF+ +PT++HWA VKRILRY+    ++ L + +S + L+
Sbjct: 1100 GALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLV 1159

Query: 912  SAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELI 971
            SAFSDADWAG+ DDR+STGG+ +F G NL+SWS+RKQ TVSRSS E+EYKA+A+ATAELI
Sbjct: 1160 SAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELI 1219

Query: 972  WIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRTKHVEVDYHFVRERVSTRQLDV 1021
            W+Q+LL E+ I   RA  LWCDN+GA YLSANPIFH RTKH+EVDYHFVR+RV+ + LD+
Sbjct: 1220 WVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDI 1279

[Close]
BLAST of CmoCh05G011780 vs. TrEMBL
Match: Q7XE22_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g30510 PE=4 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 1.8e-149
Identity = 270/511 (52.84%), Postives = 343/511 (67.12%), Query Frame = 1 

Query: 552  SSASEPTSHIIAMEHPLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPD 611
            ++  EP +   AM +  WR AM  E+ A   NKTWHLV P  G N+IDCKW++K+K+K D
Sbjct: 421  TTTGEPENLREAMANSNWRLAMEQEYSAFMSNKTWHLVPPTQGKNIIDCKWMYKIKRKAD 480

Query: 612  GSIDRYKARLIDIQNAFLHGFLNEDV---------------------------------- 671
            GSIDRYKARL+       +G   ED                                   
Sbjct: 481  GSIDRYKARLVAKGFKQRYGIDYEDTFSLVVKAATIRLILSIAVSKGWSLRQLDVQNAFL 540

Query: 672  --------YMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPSKA 731
                    YM+QPPGF +   P YLCKLDK+LYGLKQAPRAW+SRLS+K  +L F  SKA
Sbjct: 541  HGYLEEEVYMRQPPGFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKA 600

Query: 732  DVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEV 791
            D SLF +NK G  ++IL+YVDDII+ SSS+  +  LL  L+ DF +KDLG L YFLGIEV
Sbjct: 601  DTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEV 660

Query: 792  RHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVV 851
            +  S GL+L+Q  Y  D+L R  M   K   TP+  +EKL +  G  L   D + YRS+V
Sbjct: 661  KKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIV 720

Query: 852  GALQYLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLL 911
            GALQYL+LTR D+SF VN+VCQF+ SPT++HW+ VKRILRY+  T++  L   KS + L+
Sbjct: 721  GALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLI 780

Query: 912  SAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELI 971
            SAFSDADWAG  DDRRSTGG+ +F G NLISWS+RKQ+TVSRSS EAEYKA+A+AT E+ 
Sbjct: 781  SAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVT 840

Query: 972  WIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRTKHVEVDYHFVRERVSTRQLDV 1021
            W++ +L EL I++     LWCDN+GATYLSANP+FH RTKH+E+DYHFVRE+V+ + LD+
Sbjct: 841  WVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDI 900

[Close]
BLAST of CmoCh05G011780 vs. TrEMBL
Match: V9GZT4_MAIZE (Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=gag PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 3.1e-146
Identity = 329/725 (45.38%), Postives = 421/725 (58.07%), Query Frame = 1 

Query: 387  YSSSHKGYKCLDTDSGRVYMSRDVIFDENVFPFKRARPNS-----SPTMQSTHNAL--DL 446
            YS+ HKG+KCLD  +GR+Y+SRDV+FDE+VFPF     N+     S  +   H++   ++
Sbjct: 710  YSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNM 769

Query: 447  CTLHL-------------------GNSSTNLENDH---MHMSGPTNSLDAENLVSTS--- 506
             T H                    GNS     N+    +  SGP        LV +S   
Sbjct: 770  LTDHANNLPGSSSPLPFLAQHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVP 829

Query: 507  -ASELPQQSSASLP----CESALVVPPMIEASAP--PPADDIAQCPVESSAAGQPTVVAS 566
             AS  P   SA+       +S    PP+   S    P AD + Q P  S A   P     
Sbjct: 830  AASPAPTGVSANAEPAPEADSLSSGPPVATESVTGVPDADPLLQAPGSSVAHQTP----D 889

Query: 567  VAPLATTDTAIPSMWILHLLLIPR-------------SSASEPTSHIIAMEHPLWRQAMN 626
             APL+    A P   + H +  P+             +  +EP+S   A+  P WR AM 
Sbjct: 890  SAPLSA---AAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAME 949

Query: 627  DEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPDGSIDRYKARLID----------- 686
             EFQALQKN TW LV P    N+IDCKWVFK+K   DGSIDR KARL+            
Sbjct: 950  AEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDY 1009

Query: 687  -------IQNAFLHGFLNEDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAP-------- 746
                   ++++ +   L+  V  K     +D Q+      L++++Y +KQ P        
Sbjct: 1010 DDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVY-MKQPPGFADTTHP 1069

Query: 747  -----------------RAWFSRLSSKQLQLDFTPSKADVSLFIFNKTGIQMYILIYVDD 806
                             RAW+SRLS K   L F PSKADVSLFI+N     +YIL+YVDD
Sbjct: 1070 NYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDD 1129

Query: 807  IIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEVRHTSSGLILTQHKYIRDLLART 866
            III  SS  AI+ +L +L+DDF +KDLG L YFLGIEV     GL+L Q KY RDLL R 
Sbjct: 1130 IIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRV 1189

Query: 867  DMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVVGALQYLSLTRPDISFCVNRVCQ 926
             M   K V TP+  SEKL  + G  LSPE+TT+YRSVVGALQYL+LTRPD+S+ +NRVCQ
Sbjct: 1190 GMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQ 1249

Query: 927  FMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLLSAFSDADWAGNPDDRRSTGGYV 986
            F+ +PT +HW  VKRILR +  TI + L +  S + +LSAFSDADWAG PDDR+STGGY 
Sbjct: 1250 FLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYA 1309

Query: 987  IFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELIWIQVLLRELGISQARARSLWCD 1017
            +F G NLISW+S+KQSTVSRSS EAEYKA+A+ATAE+IW+Q LL ELGI       LWCD
Sbjct: 1310 LFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCD 1369

[Close]
BLAST of CmoCh05G011780 vs. TrEMBL
Match: Q6ATL7_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0021K20.25 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.9e-145
Identity = 312/737 (42.33%), Postives = 419/737 (56.85%), Query Frame = 1 

Query: 374  KSILRLNNISCA--SYSSSHKGYKCLDTDSGRVYMSRDVIFDENVFPFKRARPNSSPTMQ 433
            K  L+  + +C    YS+ HKG+KCLD  +GRVY+SRDV+FDE  FPF +  PN    ++
Sbjct: 693  KHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFTKLHPNVGAKLR 752

Query: 434  STHNALDLCTLHLGN-----------------SSTNLENDHMHMSGPTNSLD-AENLVST 493
            +    +      L                   S+ N++ D  + + P    D A + VS 
Sbjct: 753  AEIALVPELAASLPRGLQQISSVINTPENANVSNENMQQDSTYDNEPETETDGAPDTVSA 812

Query: 494  SA-------------------SELPQQSSASLPCESALVVPPMIEASAPPPADDIAQCPV 553
            +A                   S+    S AS P  SA   P    + +  P    +Q   
Sbjct: 813  NAPAESSGSPPINEPASPFGESDSATASPASAPVNSA-PHPDAAASGSSAPRGSTSQGGT 872

Query: 554  ESSAAGQPTVVASVA------PLATTDTAIPSMWILHLLLIP---RSSASEPTSHIIAME 613
             S A   P    +V       P     + I    +     +     +S  EP +   A++
Sbjct: 873  PSVAIDDPHPATTVTGQEAQRPRTRLQSGIRKEKVYTDGTVKWGMLTSTGEPENLQDALQ 932

Query: 614  HPLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPDGSIDRYKARLIDIQ 673
            +  W+ AM+ E+ AL KN TWHLV P+ G NVIDCKWV+K+K+K DGS+DRYKARL+   
Sbjct: 933  NNNWKCAMDAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKG 992

Query: 674  NAFLHGFLNEDVY--------------MKQPPGF----VDSQHP---------------- 733
                +G   ED +              +    G+    +D Q+                 
Sbjct: 993  FKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPP 1052

Query: 734  --------GYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPSKADVSLFIFNKTGIQM 793
                     Y+CKLDK+LYGLKQAPRAW+SRLS K   L F  SKAD SLF +NK  + +
Sbjct: 1053 GYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTI 1112

Query: 794  YILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEVRHTSSGLILTQHKY 853
            ++LIYVDDII++SS   A+  LL  LQ +F +KDLG L YFLGIEV     G++++Q KY
Sbjct: 1113 FLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKY 1172

Query: 854  IRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVVGALQYLSLTRPDIS 913
              DLL R +M   K V TP+  SEKL+   G  L P D T+YRS+VGALQYL+LTR DI+
Sbjct: 1173 ASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIA 1232

Query: 914  FCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLLSAFSDADWAGNPDD 973
            F VN+VCQF+ +PT+ HWA VKRILRY+     + L + KSS+ ++S +SDADWAG  DD
Sbjct: 1233 FSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLDD 1292

Query: 974  RRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELIWIQVLLRELGISQA 1021
            RRSTGG+ ++ G NL+SW+++KQ+TVSRSS EAEYKA+A+ATAE++W+Q LL+EL I   
Sbjct: 1293 RRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSP 1352

[Close]
BLAST of CmoCh05G011780 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 296.6 bits (758), Expect = 5.9e-80
Identity = 156/373 (41.82%), Postives = 224/373 (60.05%), Query Frame = 1 

Query: 613 SIDRYKARLIDIQNAFLHGFLNEDVYMKQPPGFV----DSQHPGYLCKLDKSLYGLKQAP 672
           +I  +    +DI NAFL+G L+E++YMK PPG+     DS  P  +C L KS+YGLKQA 
Sbjct: 184 AIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQAS 243

Query: 673 RAWFSRLSSKQLQLDFTPSKADVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQ 732
           R WF + S   +   F  S +D + F+     + + +L+YVDDIII S++  A+++L +Q
Sbjct: 244 RQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQ 303

Query: 733 LQDDFVVKDLGLLSYFLGIEVRHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEK 792
           L+  F ++DLG L YFLG+E+  +++G+ + Q KY  DLL  T +L  K    PM PS  
Sbjct: 304 LKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVT 363

Query: 793 LLLNGGKKLSPEDTTRYRSVVGALQYLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRIL 852
              + G      D   YR ++G L YL +TR DISF VN++ QF  +P   H   V +IL
Sbjct: 364 FSAHSGGDFV--DAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKIL 423

Query: 853 RYLHDTIDMSLCLTKSSTDLLSAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQST 912
            Y+  T+   L  +  +   L  FSDA +    D RRST GY +F G +LISW S+KQ  
Sbjct: 424 HYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQV 483

Query: 913 VSRSSMEAEYKAVADATAELIWIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRT 972
           VS+SS EAEY+A++ AT E++W+    REL +  ++   L+CDN  A +++ N +FH RT
Sbjct: 484 VSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERT 543

Query: 973 KHVEVDYHFVRER 982
           KH+E D H VRER
Sbjct: 544 KHIESDCHSVRER 554

[Close]
BLAST of CmoCh05G011780 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.9e-51
Identity = 109/228 (47.81%), Postives = 146/228 (64.04%), Query Frame = 1 

Query: 703 MYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEVRHTSSGLILTQHK 762
           MY+L+YVDDI++  SS+T +  L+ QL   F +KDLG + YFLGI+++   SGL L+Q K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 763 YIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVVGALQYLSLTRPDI 822
           Y   +L    ML  K + TP+       ++  K   P D   +RS+VGALQYL+LTRPDI
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD---FRSIVGALQYLTLTRPDI 120

Query: 823 SFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLLSAFSDADWAGNPD 882
           S+ VN VCQ M  PT   +  +KR+LRY+  TI   L + K+S   + AF D+DWAG   
Sbjct: 121 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 180

Query: 883 DRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELIW 931
            RRST G+  F G N+ISWS+++Q TVSRSS E EY+A+A   AEL W
Sbjct: 181 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh05G011780 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-15
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 547 LLIPRSSASEPTSHIIAMEHPLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKL 606
           L I  +   EP S I A++ P W QAM +E  AL +NKTW LV P    N++ CKWVFK 
Sbjct: 18  LTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKT 77

Query: 607 KQKPDGSIDRYKARLI 623
           K   DG++DR KARL+
Sbjct: 78  KLHSDGTLDRLKARLV 93

[Close]
BLAST of CmoCh05G011780 vs. TAIR10
Match: ATMG00240.1 (ATMG00240.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-11
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 814 YLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLLSAFS 873
           YL++TRPD++F VNR+ QF S+  +     V ++L Y+  T+   L  + +S   L AF+
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 874 DADWAGNPDDRRSTGGY 891
           D+DWA  PD RRS  G+
Sbjct: 62  DSDWASCPDTRRSVTGF 78

[Close]
BLAST of CmoCh05G011780 vs. NCBI nr
Match: gi|657965292|ref|XP_008374297.1| (PREDICTED: uncharacterized protein LOC103437591 [Malus domestica])

HSP 1 Score: 580.1 bits (1494), Expect = 7.6e-162
Identity = 397/1106 (35.90%), Postives = 556/1106 (50.27%), Query Frame = 1 

Query: 16   TVTRARTTQIRVELATSKKRDQSAANYFCKIKGLATELAAAGSALQDDDVIAYLLAGLGP 75
            + ++ R  Q+R EL  + + D S A+Y  K+  LA  LA +G+ + + D++A +++ +GP
Sbjct: 119  STSQNRIIQMRTELMNTSRGDLSIADYLDKVNILADNLALSGALVSESDLVAIIMSKVGP 178

Query: 76   DYDPFVTSMTTKSEALTLDDVFAHLMMYEAHQLQHQAELQLNSGSSANYTGRAELQLNLG 135
             ++  V S   +   +T   + + L+  E           + + + A   G        G
Sbjct: 179  QFETTVASAQARDTPITYTALESLLLSAEQRHTAFSLPSDVGTSAFATVRGGRGTSRGRG 238

Query: 136  SSANYASRGGQQKNRGRRDRGRGRSQGYAPSRPAGDRR---------------------- 195
             +      GG  +  G      G    ++ S  A  RR                      
Sbjct: 239  GAFRGGRGGGYARGSGSSRNYHG-DFSHSSSPAASSRRQPASSNGILDPAPASGGFSPAP 298

Query: 196  --GPSARPSCQICGKVGHTAIRCWHRMDESYQDEPSSAPPTALAATSSYKIDPN------ 255
               PS R  CQIC + GH+AI C++R++ SY+    S+   A AA    +  P       
Sbjct: 299  AFSPSGRIQCQICQRYGHSAIDCYNRLNMSYEGRVPSSRLQAYAAAPQSRGVPXAPXASP 358

Query: 256  ---WYSDTGATDHITSDLDRLAVHEHYHGGEQVQVGNGAS-LRVLHTGHSLINTATRSLA 315
               W  D+GA  HIT+D+ +L+    YHG +Q+   +G S L +   G S ++T      
Sbjct: 359  AQPWLFDSGANSHITNDVGQLSNPREYHGTDQIXXXHGGSGLHISKIGDSFLHTKLAXFX 418

Query: 316  LRNILHVIEISKHLLSVHKFSRDNDVFFEFDPWHFSIKDRQSRKSLLNGRCESGLYPIKP 375
            L N L+    S +++S+++F+ DND FF   P  + ++D ++ K L  G   +GLYP   
Sbjct: 419  LLNTLYCPHASTNIISLNRFAADNDCFFTIHPRFYHVQDSRTGKILFQGPSNNGLYPSHS 478

Query: 376  SDVDNLKHVLVSRSTTHAQWHARLGHPSSQVVKSILRLNNISCASYSSSHKGYKCLDTDS 435
            S   +     V    + A WH+R                                LD  +
Sbjct: 479  SHQPSGVFACVGERVSDALWHSR--------------------------------LDPST 538

Query: 436  GRVYMSRDVIFDENVFPFKRARPNSSPTMQSTHNALDLCTLHLGNSSTNLENDHMHMSGP 495
            GRV++SR V FDE+ FP+K +   S   + S+ + +    L +G S +           P
Sbjct: 539  GRVFLSRHVXFDEHXFPYKESIVPSPSXLSSSXDPV----LTIGPSPS--------XGAP 598

Query: 496  TNSL--DAENLVSTSAS-----------ELPQQSSASLPCESALVVPPMIEASAPPPADD 555
            T S+   + ++ ST  S             P +     P  SA  + P   AS+P PA  
Sbjct: 599  TPSIPQPSSSIPSTLPSXPTQRPLQVXTRXPSRPXXFPPXTSASPLSP--TASSPQPAFP 658

Query: 556  IAQCPVESSAAGQPTVVASVAPLATTDTAIPSMWILHLLLIPRSSAS------------- 615
            I      +  A  P V  + +  +T + +  S       ++ RS                
Sbjct: 659  ITPTXPSAPGANLPPVAPAASVSSTPEVSDXSH-----SMVTRSKVGVRKPNPKYVFVTT 718

Query: 616  ------EPTSHIIAMEHPLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQK 675
                  EPT    A +H  WR+AM DEF ALQ N T  LV     +NV+  KWV+K+K++
Sbjct: 719  FSDXLVEPTCFSQAHKHTEWRKAMADEFTALQXNGTXTLVPFHHTMNVLPNKWVYKIKRR 778

Query: 676  PDGSIDRYKARLI------------------------------------------DIQNA 735
             DGSI+RYKARL+                                          D QNA
Sbjct: 779  XDGSIERYKARLVXNGFHQQEGLDYGETFSPVVNHATIRLILSIXIHYNWPXXQLDXQNA 838

Query: 736  FLHGFLNEDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPS 795
            FLHG LNEDVYM+QPPGFVDSQ P ++CKL +SLYGLKQAPRAWF   S     L F  S
Sbjct: 839  FLHGSLNEDVYMRQPPGFVDSQRPXHVCKLQRSLYGLKQAPRAWFQCFSQHLEHLGFVSS 898

Query: 796  KADVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGI 855
              D SLF F    + +Y+LIYVDDI+I  +S+  I +L+ QL   F +KDLG L Y LG+
Sbjct: 899  HXDSSLFTFFDGSVXLYLLIYVDDILITGNSTDHIARLIQQLGVLFSMKDLGPLHYXLGM 958

Query: 856  EVRHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRS 915
            EV  T++GL LTQ KYI DLL RT+ML  K +  P +P  +L L+ G+ LS  D T +RS
Sbjct: 959  EVHXTAAGLHLTQAKYITDLLKRTNMLDCKPISAPXIPGRRLXLSDGEXLS--DLTEFRS 1018

Query: 916  VVGALQYLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTD 975
            VV ALQYL  TRPDI F VN+VCQFM  PT IH   VKRILRYL  T +  + + K S  
Sbjct: 1019 VVXALQYLLFTRPDIXFAVNQVCQFMHRPTXIHXVAVKRILRYLKATPNHGI-VYKPSPL 1078

Query: 976  LLSAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAE 1014
             L+A+ DAD+AG+PDDRRSTGGY IF G NLISWSS+KQ  VSRSS EAEY  +A     
Sbjct: 1079 HLTAYXDADYAGDPDDRRSTGGYCIFLGDNLISWSSKKQRGVSRSSTEAEYXQLAXTAXA 1138

[Close]
BLAST of CmoCh05G011780 vs. NCBI nr
Match: gi|77552925|gb|ABA95721.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 542.3 bits (1396), Expect = 1.8e-150
Identity = 299/623 (47.99%), Postives = 393/623 (63.08%), Query Frame = 1 

Query: 450  NLENDHMHMSGPTNSLDAENLVSTSASELPQQSSASLPCESALVVPPMIEASAPPPADDI 509
            ++ + H    G T+S+   ++VS++A++    +  S       V  P    +A      I
Sbjct: 295  SITHPHDEPGGDTSSISPADVVSSAAADGMHATHGSATSSGGNVSSPHTFDAA----QQI 354

Query: 510  AQCPVESSAAGQPTVVASVAPLATTDTAIPSMWILHLLLIPRSSASEPTSHIIAMEHPLW 569
             Q PV  S  G         P   TD  +    +        +   EP+S   A+    W
Sbjct: 355  QQRPVTRSQHGVHR------PKKYTDGTVRYGCL--------TETGEPSSLQEALSSANW 414

Query: 570  RQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPDGSIDRYKARLIDIQNAFL 629
            +QAM+ EF AL  NKTWHLV P  G N+ID KWV+K+K+K DG+IDRYKARL+       
Sbjct: 415  KQAMDKEFSALLHNKTWHLVPPVKGKNIIDSKWVYKIKKKADGTIDRYKARLVAKGFKQR 474

Query: 630  HGFLNED------------------------------------------VYMKQPPGFVD 689
            +G   ED                                          VYM+QPPGF D
Sbjct: 475  YGIDYEDTFSPVVKAATIRLVLSIAMSQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFED 534

Query: 690  SQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPSKADVSLFIFNKTGIQMYILI 749
            ++ P +LCKLDK+LYGLKQAPRAW+SRLS K  +L F+ SKAD SLF +NK   +M++L+
Sbjct: 535  ARQPHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLV 594

Query: 750  YVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEVRHTSSGLILTQHKYIRDL 809
            YVDDII+ SSSS A+  LL  L+ DF +KDLG L YFLGIEV+ T   L+L+Q +Y  +L
Sbjct: 595  YVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTEL 654

Query: 810  LARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVVGALQYLSLTRPDISFCVN 869
            L R +M + K V TP+  +EKL +  G +L P D T+YRS+VGALQYL+LTRPDIS+ VN
Sbjct: 655  LERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISYSVN 714

Query: 870  RVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLLSAFSDADWAGNPD----- 929
            +VCQF+ +PT+ HW+ VKRILRYL  T+D+ L + KSS++L+SAFSDADWAG+ D     
Sbjct: 715  KVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADWAGSVDDRRST 774

Query: 930  ----DRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELIWIQVLLREL 989
                DRRSTGG+ +FFG NLISWS+RKQ+TVSRSS EAEYKA+A+A AE+IW++ LL EL
Sbjct: 775  GGFADRRSTGGFAVFFGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLLTEL 834

Query: 990  GISQARARSLWCDNIGATYLSANPIFHRRTKHVEVDYHFVRERVSTRQLDVRVISSKDQL 1022
            GI    A  LWCDN+GATY++ANP+FH RTKH+EVDYHFVRE+V+ + LD+  +SS+DQ+
Sbjct: 835  GILHPNAARLWCDNLGATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQDQV 894

[Close]
BLAST of CmoCh05G011780 vs. NCBI nr
Match: gi|18254413|gb|AAL66754.1|AF464738_5 (putative copia-like retrotransposon Hopscotch polyprotein [Zea mays])

HSP 1 Score: 542.0 bits (1395), Expect = 2.3e-150
Identity = 273/511 (53.42%), Postives = 351/511 (68.69%), Query Frame = 1 

Query: 552  SSASEPTSHIIAMEHPLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPD 611
            +S+ EP     A+    W+ AM+ E+ AL KNKTWHLV P+ G NVI CKWV+K+K+K D
Sbjct: 800  TSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKAD 859

Query: 612  GSIDRYKARL----------IDIQNAFLH----------------------------GFL 671
            GS+DRYKARL          ID  + F                               FL
Sbjct: 860  GSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFL 919

Query: 672  N----EDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPSKA 731
            +    E+VYM+QPPG+ DS    Y+CKLDK+LYGLKQAPRAW+SRLS+K L L F  SKA
Sbjct: 920  HGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKA 979

Query: 732  DVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEV 791
            D SLF +NK  + +++L+YVDDII+ SS+  A E LL+ L  +F +KDLG L+YFLGIEV
Sbjct: 980  DTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEV 1039

Query: 792  RHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVV 851
                 G+ILTQ KY  DLL +  M   K + TP+  SEKL ++ G  L  +D T+YRS+V
Sbjct: 1040 NKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIV 1099

Query: 852  GALQYLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLL 911
            GALQYL+LTRPDI+F VN+VCQF+ +PT++HWA VKRILRY+    ++ L + +S + L+
Sbjct: 1100 GALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLV 1159

Query: 912  SAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELI 971
            SAFSDADWAG+ DDR+STGG+ +F G NL+SWS+RKQ TVSRSS E+EYKA+A+ATAELI
Sbjct: 1160 SAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELI 1219

Query: 972  WIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRTKHVEVDYHFVRERVSTRQLDV 1021
            W+Q+LL E+ I   RA  LWCDN+GA YLSANPIFH RTKH+EVDYHFVR+RV+ + LD+
Sbjct: 1220 WVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDI 1279

[Close]
BLAST of CmoCh05G011780 vs. NCBI nr
Match: gi|31432318|gb|AAP53968.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 538.5 bits (1386), Expect = 2.5e-149
Identity = 270/511 (52.84%), Postives = 343/511 (67.12%), Query Frame = 1 

Query: 552  SSASEPTSHIIAMEHPLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPD 611
            ++  EP +   AM +  WR AM  E+ A   NKTWHLV P  G N+IDCKW++K+K+K D
Sbjct: 421  TTTGEPENLREAMANSNWRLAMEQEYSAFMSNKTWHLVPPTQGKNIIDCKWMYKIKRKAD 480

Query: 612  GSIDRYKARLIDIQNAFLHGFLNEDV---------------------------------- 671
            GSIDRYKARL+       +G   ED                                   
Sbjct: 481  GSIDRYKARLVAKGFKQRYGIDYEDTFSLVVKAATIRLILSIAVSKGWSLRQLDVQNAFL 540

Query: 672  --------YMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTPSKA 731
                    YM+QPPGF +   P YLCKLDK+LYGLKQAPRAW+SRLS+K  +L F  SKA
Sbjct: 541  HGYLEEEVYMRQPPGFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKA 600

Query: 732  DVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLGIEV 791
            D SLF +NK G  ++IL+YVDDII+ SSS+  +  LL  L+ DF +KDLG L YFLGIEV
Sbjct: 601  DTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEV 660

Query: 792  RHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYRSVV 851
            +  S GL+L+Q  Y  D+L R  M   K   TP+  +EKL +  G  L   D + YRS+V
Sbjct: 661  KKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIV 720

Query: 852  GALQYLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSSTDLL 911
            GALQYL+LTR D+SF VN+VCQF+ SPT++HW+ VKRILRY+  T++  L   KS + L+
Sbjct: 721  GALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLI 780

Query: 912  SAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATAELI 971
            SAFSDADWAG  DDRRSTGG+ +F G NLISWS+RKQ+TVSRSS EAEYKA+A+AT E+ 
Sbjct: 781  SAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVT 840

Query: 972  WIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRTKHVEVDYHFVRERVSTRQLDV 1021
            W++ +L EL I++     LWCDN+GATYLSANP+FH RTKH+E+DYHFVRE+V+ + LD+
Sbjct: 841  WVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDI 900

[Close]
BLAST of CmoCh05G011780 vs. NCBI nr
Match: gi|802566240|ref|XP_012067590.1| (PREDICTED: uncharacterized protein LOC105630400 [Jatropha curcas])

HSP 1 Score: 538.1 bits (1385), Expect = 3.3e-149
Identity = 331/855 (38.71%), Postives = 471/855 (55.09%), Query Frame = 1 

Query: 223  DPNWYSDTGATDHITSDLDRLAVHEHYHGGEQVQVGNGASLRVLHTGHSLINTATRSLAL 282
            DP+W  D+GA  H+  DL  LA+H  Y G + V +G+G S  + HTG   +N+AT+ L+L
Sbjct: 50   DPHWVVDSGANQHVVEDLKNLAIHSDYEGSDNVFLGDGKSYPISHTGTVTLNSATKPLSL 109

Query: 283  RNILHVIEISKHLLSVHKFSRDNDVFFEFDPWHFSIKDRQSRKSLLNGRCESGLYPIKPS 342
            +N+L V  + K+L+SV+K   DN+V   F+P+ F++KD  +   L  G+  + +Y   P+
Sbjct: 110  KNVLCVPALDKNLISVYKLCTDNNVEVTFNPFLFTVKDLSTGVLLAEGKPINDIYEWPPN 169

Query: 343  ----DVDNLKHVLVSRSTTHAQWHARLGHPSSQVVKSILRL-------NNISCASYSSSH 402
                   N+ H++ S   +   WH RLGHPS  +++ IL+        NN  C S  S+ 
Sbjct: 170  LSRGSSLNINHIVAS---SQPLWHRRLGHPSIPILRLILQSFDLLVSNNNFFCDS--STQ 229

Query: 403  KGYKCLDTDSGRVYMSRDVIFDENVFPFKRARPNSSPTMQSTHNALDLCT-LH-LGNSST 462
              YKC D  S ++Y+SR V F E+ FPF      ++   Q   + LD  + +H +   S 
Sbjct: 230  SAYKCYDPHSSKIYLSRHVDFIESDFPFSSL---ATALEQPDSHTLDTWSPIHFILPMSA 289

Query: 463  NLENDHMHMSGPTNSLDAENLVSTSASELPQQSSASLPCESALVVPPMIEASAPPPADDI 522
             L++     SG  N ++ ++  STS S + QQ   S   +S L           P   D+
Sbjct: 290  GLDS-----SGQPNYVNPDS--STSPSLVQQQPEHSNISDSGLGTEISNSPILLPTPSDV 349

Query: 523  AQCPVESSAAGQPTVVASVAPLATTDTAIPSMWILHLLLIPRSSAS---EPTSHIIAMEH 582
                + +S   Q     +V P+ T         I  L L     +     P +   A++ 
Sbjct: 350  VSSLLLASNLNQ-----NVHPMVTRSKNQIRKPINRLCLSTEVQSDIQFVPKTVAQALKD 409

Query: 583  PLWRQAMNDEFQALQKNKTWHLVSPRAGLNVIDCKWVFKLKQKPDGSIDRYKARLIDIQN 642
            P WR AM +E+QAL K KTW LV                            KA  +++ N
Sbjct: 410  PKWRSAMEEEYQALMKQKTWSLVPLE-------------------------KANNVNVNN 469

Query: 643  AFLHGFLNEDVYMKQPPGFVDSQHPGYLCKLDKSLYGLKQAPRAWFSRLSSKQLQLDFTP 702
            AFLHG LNEDV+M+QPPGF+   +  ++CKL+KSLYGLKQAPR W+S L+S  +   F  
Sbjct: 470  AFLHGKLNEDVFMEQPPGFIQHHNLKFVCKLEKSLYGLKQAPRVWYSALTSFLIAAGFQQ 529

Query: 703  SKADVSLFIFNKTGIQMYILIYVDDIIIISSSSTAIEKLLTQLQDDFVVKDLGLLSYFLG 762
            SK+D  LFI+++ G  +Y+L+YVDDIII  SS+  IE  + QL   F +KDLG L YFLG
Sbjct: 530  SKSDSCLFIYHRQGTVLYLLVYVDDIIITGSSAMRIEAFINQLGKAFSIKDLGNLHYFLG 589

Query: 763  IEVRHTSSGLILTQHKYIRDLLARTDMLTSKGVPTPMLPSEKLLLNGGKKLSPEDTTRYR 822
            +EV+ T++GL L+QH YIRDLL +  M  +K   TPM  S  + LN       +D T YR
Sbjct: 590  VEVKRTATGLFLSQHNYIRDLLEKAHMHEAKSASTPM--SSTMTLNSSDSACLQDATVYR 649

Query: 823  SVVGALQYLSLTRPDISFCVNRVCQFMSSPTSIHWATVKRILRYLHDTIDMSLCLTKSST 882
            +++G+LQYL LTRPD++F VN++ Q+ S PT  HW  +KR+LRYL  T D  L L + + 
Sbjct: 650  ALIGSLQYLLLTRPDVAFVVNKLAQYTSKPTEKHWTALKRLLRYLVCTFDFGLNLCRQTD 709

Query: 883  DLLSAFSDADWAGNPDDRRSTGGYVIFFGGNLISWSSRKQSTVSRSSMEAEYKAVADATA 942
            D L AF DADWAGN DDR ST  Y+IF G N ++WSS+KQ TV+RSS EAEYK+VA   A
Sbjct: 710  DDLHAFFDADWAGNHDDRTSTSAYIIFLGKNPVAWSSKKQKTVARSSTEAEYKSVASTAA 769

Query: 943  ELIWIQVLLRELGISQARARSLWCDNIGATYLSANPIFHRRTKHVEVDYHFVRERV---- 1002
            +L W++ LL EL   + ++  ++CDN+GATY++AN +FH R KH+ +DYHFVR+ V    
Sbjct: 770  DLAWVRNLLDELQFPRPKSPVIYCDNLGATYVAANSVFHSRMKHIAIDYHFVRQHVQNGC 829

Query: 1003 ----STRQLDVRVISSK----------------------------DQLADIMTKPLPAPS 1026
                +T      V  S+                            DQLAD++TKPL   +
Sbjct: 830  DNLGATYVAANSVFHSRMKHIAIDYHFVRQHVQNGTLRVTHISAKDQLADMLTKPLSFTA 857

The following BLAST results are available for this feature:
BLAST of CmoCh05G011780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC2.1e-7134.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME4.7e-7136.98Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M810_ARATH1.8e-4947.81Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
YCH4_YEAST4.2e-4332.58Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
YD11B_YEAST1.4e-2225.48Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
BLAST of CmoCh05G011780 vs. TrEMBL
Match NameE-valueIdentityDescription
Q2QY49_ORYSJ1.2e-15047.99Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
Q8W0X9_MAIZE1.6e-15053.42Putative copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=Z178A11... [more]
Q7XE22_ORYSJ1.8e-14952.84Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
V9GZT4_MAIZE3.1e-14645.38Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=gag PE=4 SV=1[more]
Q6ATL7_ORYSJ5.9e-14542.33Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0021K20.25 PE=4 SV... [more]
BLAST of CmoCh05G011780 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.15.9e-8041.82 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.19.9e-5147.81ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00820.11.3e-1550.00ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
ATMG00240.12.0e-1141.56ATMG00240.1 Gag-Pol-related retrotransposon family protein[more]
BLAST of CmoCh05G011780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657965292|ref|XP_008374297.1|7.6e-16235.90PREDICTED: uncharacterized protein LOC103437591 [Malus domestica][more]
gi|77552925|gb|ABA95721.1|1.8e-15047.99retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
gi|18254413|gb|AAL66754.1|AF464738_52.3e-15053.42putative copia-like retrotransposon Hopscotch polyprotein [Zea mays][more]
gi|31432318|gb|AAP53968.1|2.5e-14952.84retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
gi|802566240|ref|XP_012067590.1|3.3e-14938.71PREDICTED: uncharacterized protein LOC105630400 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR025724GAG-pre-integrase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
biological_process GO:0022900 electron transport chain
cellular_component GO:0005739 mitochondrion
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G011780.1CmoCh05G011780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 622..783
score: 1.1
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 335..390
score: 8.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 144..339
score: 0.0coord: 552..945
score: 0.0coord: 14..125
score: 0.0coord: 358..515
score:
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 14..125
score: 0.0coord: 144..339
score: 0.0coord: 552..945
score: 0.0coord: 358..515
score:
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 19..106
score: 2.8
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 583..763
score: 1.16E-30coord: 795..977
score: 1.16

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G011780Cucumber (Gy14) v1cgycmoB0179
CmoCh05G011780Cucurbita maxima (Rimu)cmacmoB190
CmoCh05G011780Cucurbita maxima (Rimu)cmacmoB787
CmoCh05G011780Wild cucumber (PI 183967)cmocpiB787
CmoCh05G011780Cucumber (Chinese Long) v2cmocuB782
CmoCh05G011780Cucumber (Chinese Long) v2cmocuB783
CmoCh05G011780Melon (DHL92) v3.5.1cmomeB724
CmoCh05G011780Watermelon (Charleston Gray)cmowcgB700
CmoCh05G011780Watermelon (97103) v1cmowmB757
CmoCh05G011780Cucurbita pepo (Zucchini)cmocpeB721
CmoCh05G011780Cucurbita pepo (Zucchini)cmocpeB742
CmoCh05G011780Bottle gourd (USVL1VR-Ls)cmolsiB706
CmoCh05G011780Cucumber (Gy14) v2cgybcmoB243
CmoCh05G011780Melon (DHL92) v3.6.1cmomedB821
CmoCh05G011780Silver-seed gourdcarcmoB0974
CmoCh05G011780Cucumber (Chinese Long) v3cmocucB0924
CmoCh05G011780Watermelon (97103) v2cmowmbB785
CmoCh05G011780Cucurbita moschata (Rifu)cmocmoB148