CmoCh05G011750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G011750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Disease resistance protein (TIR-NBS-LRR class)
Location	Cmo_Chr05 : 9262978 .. 9263823 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTAGAGGCATTGGTAAGACCACTTTGGCCAAAGCTTCATACAACAAAATGGCTCACCAATTTGAAGCGTGCTGCTTTCTATCAAAAGTTAAGGAAGCTTCAAAGTAATTCAATGGCCTTGTTCAACTACAGGAGAACCTACTCCATGAGATATTAAAGGAAGATTTAAAGTTTGGCAATCTTGACAAAGGAATCAACATCATAAGGCATAGACTGCGTTCAAAGAAAGTTCTTATAGCGGTTGATGATGTGGATAAGCTTGAGCCGCTAGAAGCATTGGTTAGTGGGCGTGATTGGTTTGGCCCTGGTAGTGTAATCATTGTGACAACAAGAAACCATCATTTACTTTCTATCCATGAATTTGATAAAAAAGTATGGTATTCGAAGAATGAATCATGATGATGCCCTTGAACTTTTTAGTTGGCATGCTTTTAAGAAAAGTCATCCACCAAGTACTTATATAGACCTTTCAAAATGTGTTACAAGTTATTGTAAAGGTCAACCCTTGGCTCTGGCTGTTTTGGGTTCTTTCCTTTGTACTAGAGATGACCAAACATATTGGAGAAGTATATTAGATGAATTTGAGAACTCTTTGAGTAAAGACATAAGTGATATTTTTCAAATAAGTTTTGATGGACTTGAAGAAAAAGAACCGGAAATATTCTTCGATATTTCTTGTTTTTCAATGGGAGAAAAAGTTGACTACATTAAGAATATTTTAAACTCATGTCATCTCAATCTAGATTTTGGAATTATAGTTCCTGTAGATCTTTCACTTATTATGGTTAAAAATCATAAGGTGGAAATGTATGACTTAGTACAACAATGGACCATAAAATAA

mRNA sequence

ATGGGATTAGAGGCATTGGAGAACCTACTCCATGAGATATTAAAGGAAGATTTAAAGTTTGGCAATCTTGACAAAGGAATCAACATCATAAGGCATAGACTGCGTTCAAAGAAAGTTCTTATAGCGGTTGATGATGTGGATAAGCTTGAGCCGCTAGAAGCATTGGTTAGTGGGCGTGATTGGTTTGGCCCTGGTAGTTATGGTATTCGAAGAATGAATCATGATGATGCCCTTGAACTTTTTAGTTGGCATGCTTTTAAGAAAAGTCATCCACCAAGTACTTATATAGACCTTTCAAAATGTGTTACAAGTTATTGTAAAGGTCAACCCTTGGCTCTGGCTGTTTTGGGTTCTTTCCTTTGTACTAGAGATGACCAAACATATTGGAGAAGTATATTAGATGAATTTGAGAACTCTTTGAGTAAAGACATAAGTGATATTTTTCAAATAAGTTTTGATGGACTTGAAGAAAAAGAACCGGAAATATTCTTCGATATTTCTTGTTTTTCAATGGGAGAAAAAGTTGACTACATTAAGAATATTTTAAACTCATGTCATCTCAATCTAGATTTTGGAATTATAGTTCCTGTAGATCTTTCACTTATTATGGTTAAAAATCATAAGGTGGAAATGTATGACTTAGTACAACAATGGACCATAAAATAA

Coding sequence (CDS)

ATGGGATTAGAGGCATTGGAGAACCTACTCCATGAGATATTAAAGGAAGATTTAAAGTTTGGCAATCTTGACAAAGGAATCAACATCATAAGGCATAGACTGCGTTCAAAGAAAGTTCTTATAGCGGTTGATGATGTGGATAAGCTTGAGCCGCTAGAAGCATTGGTTAGTGGGCGTGATTGGTTTGGCCCTGGTAGTTATGGTATTCGAAGAATGAATCATGATGATGCCCTTGAACTTTTTAGTTGGCATGCTTTTAAGAAAAGTCATCCACCAAGTACTTATATAGACCTTTCAAAATGTGTTACAAGTTATTGTAAAGGTCAACCCTTGGCTCTGGCTGTTTTGGGTTCTTTCCTTTGTACTAGAGATGACCAAACATATTGGAGAAGTATATTAGATGAATTTGAGAACTCTTTGAGTAAAGACATAAGTGATATTTTTCAAATAAGTTTTGATGGACTTGAAGAAAAAGAACCGGAAATATTCTTCGATATTTCTTGTTTTTCAATGGGAGAAAAAGTTGACTACATTAAGAATATTTTAAACTCATGTCATCTCAATCTAGATTTTGGAATTATAGTTCCTGTAGATCTTTCACTTATTATGGTTAAAAATCATAAGGTGGAAATGTATGACTTAGTACAACAATGGACCATAAAATAA

Homology

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BLAST of CmoCh05G011750 vs. Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.8e-37
Identity = 91/236 (38.56%), Postives = 135/236 (57.20%), Query Frame = 1


Query: 2   GLEALEN-LLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEP-LEALVSGR 61
           G+ +L+N LL E+L+E   + N + G + +  RLRSKKVLI +DD+D  +  LE L    
Sbjct: 258 GMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDL 317

Query: 62  DWFGPGS------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKC 121
           DWFG GS                  Y +  +   ++++LF  HAF K  P   +  LS  
Sbjct: 318 DWFGNGSRIIITTRDKHLIEKNDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLE 377

Query: 122 VTSYCKGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPE 181
           V +Y KG PLAL V GS L      T W+S ++  +N+    I D  +IS+DGLE K+ E
Sbjct: 378 VVNYAKGLPLALKVWGSLLHNLR-LTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQE 437

Query: 182 IFFDISCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNH-KVEMYDLVQ 217
           +F DI+CF  GE+ DYI  IL SCH+  ++G+ + +D SL+ +  + +V+M+DL+Q
Sbjct: 438 MFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQ 492

[Close]

BLAST of CmoCh05G011750 vs. Swiss-Prot
Match: RLM1B_ARATH (Disease resistance protein RML1B OS=Arabidopsis thaliana GN=RLM1B PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.8e-23
Identity = 67/216 (31.02%), Postives = 112/216 (51.85%), Query Frame = 1


Query: 27  INIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS--------------YGIRRM 86
           +  I+  L  ++VLI +DDV+KL+ LEAL +   WFGPGS              +GI   
Sbjct: 281 LGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQHGINNT 340

Query: 87  NH------DDALELFSWHAFKKSHPPSTYIDLSKCVTSYCKGQPLALAVLGSFLCTRDDQ 146
            H      +DAL++   +AFK++ P   + +LS+ VT  C   PL L V+GS L  + + 
Sbjct: 341 YHVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGSSLRGKKED 400

Query: 147 TYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDISCFSMGEKVDYIKNILNSCH 206
             W  ++   E  L +DI D+ ++ ++ L+E    +F  I+ F   E  D +K +     
Sbjct: 401 E-WEDVVTRLETILDQDIEDVLRVGYESLDENAQTLFLHIAIFFNKEDGDLVKTMFAESD 460

Query: 207 LNLDFGIIVPVDLSLIMVK-----NHKVEMYDLVQQ 218
           L++ +G+ +  + SLI +K     + K+ M+ L+QQ
Sbjct: 461 LDVKYGLKILENRSLIKMKIFSNGDTKIVMHRLLQQ 495

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BLAST of CmoCh05G011750 vs. Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.7e-22
Identity = 67/228 (29.39%), Postives = 106/228 (46.49%), Query Frame = 1


Query: 9   LLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS-- 68
           L  + LKE+         ++++R RL +K+VL+ +DDV     +E+ + G DWFGP S  
Sbjct: 213 LEEQFLKENAGASGTVTKLSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLI 272

Query: 69  ------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYCKG 128
                             Y ++ +N  +AL+LFS  A           ++S  V  Y  G
Sbjct: 273 IITSKDKSVFRLCRVNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANG 332

Query: 129 QPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDISC 188
            PLAL + G  L  +           + +        D  + S+D L ++E  IF DI+C
Sbjct: 333 HPLALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIAC 392

Query: 189 FSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQ 217
           F  GE VDY+  +L  C      GI V V+ SL+ +  ++V M++L+Q
Sbjct: 393 FFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQ 440

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BLAST of CmoCh05G011750 vs. Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 67/213 (31.46%), Postives = 108/213 (50.70%), Query Frame = 1


Query: 27  INIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS-------------------- 86
           +  I  RL+S+KVLI +DDVD +E L+AL     WFG  S                    
Sbjct: 279 LGAIEERLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVSHDINHM 338

Query: 87  YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYCKGQPLALAVLGSFLCTRDDQ 146
           Y +   +  +AL +F  HAFK+S P      L+   T+     PLAL VLGSF+  +  +
Sbjct: 339 YQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKE 398

Query: 147 TYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDISCFSMGEKVDYIKN-ILNSC 206
             W   L   ++ L  ++  + ++ +DGL + E ++F  I+C   G+  +Y+K  I+ + 
Sbjct: 399 E-WEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANN 458

Query: 207 HLNLDFGIIVPVDLSLIM-VKNHKVEMYDLVQQ 218
              + FG+ V  D SLI   +N ++EM+ L++Q
Sbjct: 459 DTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQ 490

[Close]

BLAST of CmoCh05G011750 vs. Swiss-Prot
Match: RPP4_ARATH (Disease resistance protein RPP4 OS=Arabidopsis thaliana GN=RPP4 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-21
Identity = 76/239 (31.80%), Postives = 118/239 (49.37%), Query Frame = 1


Query: 1   MGLEALENLLHEIL-KEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGR 60
           M L   + LL EIL ++D+K  +      ++  RL+ KKVLI +DDVD LE L+ LV   
Sbjct: 254 MKLSWEKELLSEILGQKDIKIDHF----GVVEQRLKHKKVLILLDDVDNLEFLKTLVGKA 313

Query: 61  DWFGPGS--------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLS 120
           +WFG GS                    Y +   +   AL++ S +AF K  PP  + +L+
Sbjct: 314 EWFGSGSRIIVITQDKQLLKAHEIDLVYEVELPSQGLALKMISQYAFGKDSPPDDFKELA 373

Query: 121 KCVTSYCKGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKE 180
             V       PL L+VLGS L  R D+  W  ++    N     I +  ++ +D L +K 
Sbjct: 374 FEVAELVGSLPLGLSVLGSSLKGR-DKDEWVKMMPRLRNDSDDKIEETLRVGYDRLNKKN 433

Query: 181 PEIFFDISCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMV-KNHKVEMYDLVQQ 218
            E+F  I+CF  G KV  +K +L       D G+ +  D SLI +  +  +EM++L+++
Sbjct: 434 RELFKCIACFFNGFKVSNVKELLED-----DVGLTMLADKSLIRITPDGDIEMHNLLEK 482

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BLAST of CmoCh05G011750 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 8.7e-78
Identity = 152/231 (65.80%), Postives = 178/231 (77.06%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E LL+EILK DLK GNLD+GINIIR RLRSKKVLI +DDVDKL+ LEALV  RDWFG GS
Sbjct: 271 EKLLYEILKFDLKIGNLDEGINIIRSRLRSKKVLIVLDDVDKLKQLEALVGERDWFGHGS 330

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               YG+R ++H  +LELFSWHAFKKSHP S Y+DLSK  T+YC
Sbjct: 331 KIIVTTRNSHLLSSHEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYC 390

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLCTRD Q  WR+ILDEFENSLS+DI  I QISFDGLEEK  EIF DI
Sbjct: 391 KGHPLALVVLGSFLCTRD-QIKWRTILDEFENSLSEDIEHIIQISFDGLEEKIKEIFLDI 450

Query: 187 SCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEKV+Y+K++LN+CH +LDFGIIV +DLSLI V+N +V+M+DL++Q
Sbjct: 451 SCLFVGEKVNYVKSVLNTCHFSLDFGIIVLMDLSLITVENEEVQMHDLIRQ 500

[Close]

BLAST of CmoCh05G011750 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.9e-72
Identity = 144/231 (62.34%), Postives = 173/231 (74.89%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E+LL+EIL  DLK  NLD+GINIIR+RL SKKVLI +DDVDKLE LEALV G DWFG GS
Sbjct: 280 ESLLYEILMVDLKVVNLDRGINIIRNRLCSKKVLIVLDDVDKLEQLEALVGGCDWFGKGS 339

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               + I  +N D A+ELFSWHAFKK+ P S Y+DLSK  TSYC
Sbjct: 340 RIIVTTRNKHLLFSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYC 399

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLC RD Q  W SILDEFENSL+KDI DI Q+SFDGLE+K  +IF DI
Sbjct: 400 KGHPLALVVLGSFLCIRD-QAEWCSILDEFENSLNKDIKDILQLSFDGLEDKIKDIFLDI 459

Query: 187 SCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEKV+Y+K++L +CH+NLDFG+IV +DLSLI ++N KV+M+DL++Q
Sbjct: 460 SCLLVGEKVEYVKDMLGACHVNLDFGVIVLMDLSLITIENDKVQMHDLIKQ 509

[Close]

BLAST of CmoCh05G011750 vs. TrEMBL
Match: A0A0A0LLL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.3e-69
Identity = 138/232 (59.48%), Postives = 172/232 (74.14%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           +NLL+EIL++DLKF NLDKGI IIR+RLRSKKVLI +DDVDKLE LEALV GRDWFG GS
Sbjct: 280 QNLLYEILEDDLKFVNLDKGITIIRNRLRSKKVLIVLDDVDKLEQLEALVGGRDWFGQGS 339

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               + I+ +N D A+ELFSWHAFK+SHP S Y+DL++  TSYC
Sbjct: 340 KIIVTTRNSHLLSSHGFDEMHNIQGLNQDRAIELFSWHAFKESHPSSNYLDLAERATSYC 399

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLC R  QT WRSILD+FENSL+ DI DI Q+SFDGLE    +IF DI
Sbjct: 400 KGHPLALVVLGSFLCNR-GQTEWRSILDKFENSLNNDIKDILQLSFDGLEGGVKDIFLDI 459

Query: 187 SCFSMGEKV-DYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEK  +  K +L++CHLN+DFGI++ +DLSL+ ++  +V+M+ L+QQ
Sbjct: 460 SCLFVGEKYNNCAKKMLSACHLNVDFGIMILMDLSLVTIEKDRVQMHGLIQQ 510

[Close]

BLAST of CmoCh05G011750 vs. TrEMBL
Match: A0A0A0LFS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.5e-64
Identity = 134/232 (57.76%), Postives = 164/232 (70.69%), Query Frame = 1


Query: 7   ENLLHEILKEDLK-FGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPG 66
           E LL+EILKEDLK   + D+GINIIR RL SKKVLI +DDV+ LE LEALV GRDWFG G
Sbjct: 269 ETLLNEILKEDLKVIVSRDRGINIIRSRLCSKKVLIVLDDVNDLEQLEALVGGRDWFGQG 328

Query: 67  S--------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSY 126
           S                    + I+ +N D ALELFSWHAFKKSHP S Y+D SK  TSY
Sbjct: 329 SKIIVTTRNEHLLSSHGFDEKHKIQELNQDHALELFSWHAFKKSHPSSNYLDFSKRATSY 388

Query: 127 CKGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFD 186
           CKG  LAL VLGSFLC R  +  W  +LDEFENSL KDI D+ Q+SFDGLE+K  +IF D
Sbjct: 389 CKGLSLALVVLGSFLCGRAKEE-WNGMLDEFENSLRKDIKDVLQLSFDGLEDKIKDIFLD 448

Query: 187 ISCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           ISC  +GE+    K +L++CHLN+DFGI++ +DLSLI V+  +V+M++L+QQ
Sbjct: 449 ISCLFVGEEYKCAKKMLSACHLNIDFGIMILMDLSLITVEMDRVQMHELIQQ 499

[Close]

BLAST of CmoCh05G011750 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 125/201 (62.19%), Postives = 145/201 (72.14%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E LL+EIL  DLK  NLD+GINIIR+RL  KKVLI +DDVDKLE LEALV GRDWFG GS
Sbjct: 280 ETLLYEILTVDLKVVNLDRGINIIRNRLCLKKVLIVLDDVDKLEQLEALVGGRDWFGQGS 339

Query: 67  Y--------------------GIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                                 I  ++ D A+ELFSWHAFKK+HP S Y+DLSK  TSYC
Sbjct: 340 RIIVTTRNKHLLSSHGFDEMKNILGLDEDKAIELFSWHAFKKNHPSSNYLDLSKRATSYC 399

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLCTR DQ  W SILDEFENSL+KDI DI Q+SFDGLE+K  +IF DI
Sbjct: 400 KGHPLALVVLGSFLCTR-DQVEWCSILDEFENSLNKDIKDILQLSFDGLEDKVKDIFLDI 459

Query: 187 SCFSMGEKVDYIKNILNSCHL 188
           SC  +GEK  Y+K++L++CH+
Sbjct: 460 SCLLVGEKGKYVKDMLSACHM 479

[Close]

BLAST of CmoCh05G011750 vs. TAIR10
Match: AT5G36930.2 (AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-32
Identity = 79/235 (33.62%), Postives = 131/235 (55.74%), Query Frame = 1


Query: 4   EALENLLHEILKEDLKFGNLD-KGIN-IIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDW 63
           E   +L H++L + L+  +++ KG++  ++ R RSK+VL+ VDDVD +  L +    RD 
Sbjct: 257 EGRTHLQHQLLSDILRRNDIEFKGLDHAVKERFRSKRVLLVVDDVDDVHQLNSAAIDRDC 316

Query: 64  FG--------------------PGSYGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKC 123
           FG                     GSY  + ++ D++LELFSWHAF+ S PP  ++  S+ 
Sbjct: 317 FGHGSRIIITTRNMHLLKQLRAEGSYSPKELDGDESLELFSWHAFRTSEPPKEFLQHSEE 376

Query: 124 VTSYCKGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPE 183
           V +YC G PLA+ VLG+FL  R  +  W S L   +   + +I    QISF+ L  ++ +
Sbjct: 377 VVTYCAGLPLAVEVLGAFLIERSIRE-WESTLKLLKRIPNDNIQAKLQISFNALTIEQKD 436

Query: 184 IFFDISCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQ 217
           +F DI+CF +G    Y+  IL+ C+L  D  + + ++  LI +  + + M+DL++
Sbjct: 437 VFLDIACFFIGVDSYYVACILDGCNLYPDIVLSLLMERCLITISGNNIMMHDLLR 490

[Close]

BLAST of CmoCh05G011750 vs. TAIR10
Match: AT4G12010.1 (AT4G12010.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 79/236 (33.47%), Postives = 128/236 (54.24%), Query Frame = 1


Query: 2   GLEAL-ENLLHEILKE-DLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGR 61
           GLE+L + L   +L + DL+ G           RL+SK++LI +DDV+  + +  L+   
Sbjct: 254 GLESLLQKLFSTVLNDRDLEIGAPGNAHERFERRLKSKRLLIVLDDVNDEKQIRYLMGHC 313

Query: 62  DWFGPGS-------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSK 121
            W+  GS                   Y + ++N  +AL+LFS +AF  S P   +  L+ 
Sbjct: 314 KWYQGGSRIIITTRDSKLIETIKGRKYVLPKLNDREALKLFSLNAFSNSFPLKEFEGLTN 373

Query: 122 CVTSYCKGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEP 181
            V  Y KG PLAL VLGS LC RDD  YW + LD  ++    DI ++ + S++ L  ++ 
Sbjct: 374 MVLDYAKGHPLALKVLGSDLCERDD-LYWEAKLDRLKSRSHGDIYEVLETSYEELTTEQK 433

Query: 182 EIFFDISCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQ 217
            +F DI+CF   E VDY+ ++LNS  +++   +   VD  LI + ++++EM+D++Q
Sbjct: 434 NVFLDIACFFRSENVDYVTSLLNSHGVDVSGVVKDLVDKCLITLSDNRIEMHDMLQ 488

[Close]

BLAST of CmoCh05G011750 vs. TAIR10
Match: AT5G17680.1 (AT5G17680.1 disease resistance protein (TIR-NBS-LRR class), putative)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 78/211 (36.97%), Postives = 115/211 (54.50%), Query Frame = 1


Query: 28  NIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS--------------------Y 87
           NII+ R R K V I +DDVD+ E L  LV    WFGPGS                    Y
Sbjct: 279 NIIKERFRHKMVFIVLDDVDRSEQLNELVKETGWFGPGSRIIVTTRDRHLLLSHGINLVY 338

Query: 88  GIRRMNHDDALELFSWHAFKKS-HPPSTYIDLSKCVTSYCKGQPLALAVLGSFLCTRDDQ 147
            ++ +   +AL+LF  +AF++    P  + +LS    +Y  G PLAL VLGSFL  R  Q
Sbjct: 339 KVKCLPKKEALQLFCNYAFREEIILPHGFEELSVQAVNYASGLPLALRVLGSFLYRR-SQ 398

Query: 148 TYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDISCFSMGEKVDYIKNILNSCH 207
             W S L   +     DI ++ ++S+DGL+E+E  IF  ISCF   ++VDY++ +L+ C 
Sbjct: 399 IEWESTLARLKTYPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKQVDYVRKLLDLCG 458

Query: 208 LNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
              + GI +  + SLI+  N  V+++DL++Q
Sbjct: 459 YAAEIGITILTEKSLIVESNGCVKIHDLLEQ 488

[Close]

BLAST of CmoCh05G011750 vs. TAIR10
Match: AT5G18360.1 (AT5G18360.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-29
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 1


Query: 27  INIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS-------------------- 86
           + +++ RL+  KVL+ +DDVDKLE L+ALV    WFG GS                    
Sbjct: 281 LGLVKERLQDLKVLVVLDDVDKLEQLDALVKQSQWFGSGSRIIVTTENKQLLRAHGITCI 340

Query: 87  YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYCKGQPLALAVLGSFL--CTRD 146
           Y +   +  D+L++F  +AF +S  P   I+L+  +T      PLAL VLGS L   ++D
Sbjct: 341 YELGFPSRSDSLQIFCQYAFGESSAPDGCIELATEITKLAGYLPLALKVLGSSLRGMSKD 400

Query: 147 DQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDISCFSMGEKVDYIKNILNS 206
           +Q   +S L     SL++DI ++ ++ +DG+ +K+  IF  I+C   GE VDY+K IL S
Sbjct: 401 EQ---KSALPRLRTSLNEDIRNVLRVGYDGIHDKDKVIFLHIACLFNGENVDYVKQILAS 460

Query: 207 CHLNLDFGIIVPVDLSLIMVK--NHKVEMYDLVQQ 218
             L++ FG+ V    SLI +   N  + M++L++Q
Sbjct: 461 SGLDVTFGLQVLTSRSLIHISRCNRTITMHNLLEQ 492

[Close]

BLAST of CmoCh05G011750 vs. TAIR10
Match: AT5G46450.1 (AT5G46450.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 125.6 bits (314), Expect = 3.9e-29
Identity = 86/238 (36.13%), Postives = 129/238 (54.20%), Query Frame = 1


Query: 1   MGLEALENLLHEIL-KEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGR 60
           M L   EN L EIL K+++K G +++       RL+ +KVLI +DD+D  + L+ALV   
Sbjct: 263 MKLRLRENFLFEILGKKNMKIGAMEE-------RLKHQKVLIIIDDLDDQDVLDALVGRT 322

Query: 61  DWFGPGS--------------YGIRRM------NHDDALELFSWHAFKKSHPPSTYIDLS 120
            WFG GS              +GI  +      + + ALE+F  +AF+K+ PP  +++LS
Sbjct: 323 QWFGSGSRIIVVTKNKHFLRAHGIDHVYEACLPSEELALEMFCRYAFRKNSPPDGFMELS 382

Query: 121 KCVTSYCKGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKE 180
             V       PL L VLGS+L  RD +  W  ++   +N L   I    ++S+DGL  K+
Sbjct: 383 SEVALRAGNLPLGLKVLGSYLRGRDIED-WMDMMPRLQNDLDGKIEKTLRVSYDGLNNKK 442

Query: 181 PE-IFFDISCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQ 217
            E IF  I+C   GEKV+ IK +L    L+++ G+   VD SLI V+   +EM+ L+Q
Sbjct: 443 DEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIGLKNLVDKSLIFVREDTIEMHRLLQ 492

[Close]

BLAST of CmoCh05G011750 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 3.9e-79
Identity = 155/231 (67.10%), Postives = 180/231 (77.92%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E LL+EILK DLK  NLD+GINIIR RLRSKKVLI +DDVDKL+ LEALV GRDWFG GS
Sbjct: 269 EKLLYEILKVDLKVDNLDEGINIIRSRLRSKKVLIVLDDVDKLKQLEALVGGRDWFGRGS 328

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               YGIR ++H  ALELFSWHAFKKSHP S Y+DLS+  TSYC
Sbjct: 329 KIIVTTRNSHLLSSHEFDEKYGIRELSHGHALELFSWHAFKKSHPSSNYLDLSERATSYC 388

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLALAVLGSFLCTRD QT W++ILDEFENSLS+DI  I QISFDGLEEK  EIF DI
Sbjct: 389 KGHPLALAVLGSFLCTRD-QTKWKTILDEFENSLSEDIEHIIQISFDGLEEKIKEIFLDI 448

Query: 187 SCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEKV+Y+K++LN+CH +LDFGIIV +DLSLI V+N +V+M+DL++Q
Sbjct: 449 SCLFVGEKVNYVKSVLNTCHFSLDFGIIVLIDLSLITVENEEVQMHDLIRQ 498

[Close]

BLAST of CmoCh05G011750 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 152/231 (65.80%), Postives = 178/231 (77.06%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E LL+EILK DLK GNLD+GINIIR RLRSKKVLI +DDVDKL+ LEALV  RDWFG GS
Sbjct: 271 EKLLYEILKFDLKIGNLDEGINIIRSRLRSKKVLIVLDDVDKLKQLEALVGERDWFGHGS 330

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               YG+R ++H  +LELFSWHAFKKSHP S Y+DLSK  T+YC
Sbjct: 331 KIIVTTRNSHLLSSHEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYC 390

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLCTRD Q  WR+ILDEFENSLS+DI  I QISFDGLEEK  EIF DI
Sbjct: 391 KGHPLALVVLGSFLCTRD-QIKWRTILDEFENSLSEDIEHIIQISFDGLEEKIKEIFLDI 450

Query: 187 SCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEKV+Y+K++LN+CH +LDFGIIV +DLSLI V+N +V+M+DL++Q
Sbjct: 451 SCLFVGEKVNYVKSVLNTCHFSLDFGIIVLMDLSLITVENEEVQMHDLIRQ 500

[Close]

BLAST of CmoCh05G011750 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 152/231 (65.80%), Postives = 178/231 (77.06%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E LL+EILK DLK GNLD+GINIIR RLRSKKVLI +DDVDKL+ LEALV  RDWFG GS
Sbjct: 271 EKLLYEILKFDLKIGNLDEGINIIRSRLRSKKVLIVLDDVDKLKQLEALVGERDWFGHGS 330

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               YG+R ++H  +LELFSWHAFKKSHP S Y+DLSK  T+YC
Sbjct: 331 KIIVTTRNSHLLSSHEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYC 390

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLCTRD Q  WR+ILDEFENSLS+DI  I QISFDGLEEK  EIF DI
Sbjct: 391 KGHPLALVVLGSFLCTRD-QIKWRTILDEFENSLSEDIEHIIQISFDGLEEKIKEIFLDI 450

Query: 187 SCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEKV+Y+K++LN+CH +LDFGIIV +DLSLI V+N +V+M+DL++Q
Sbjct: 451 SCLFVGEKVNYVKSVLNTCHFSLDFGIIVLMDLSLITVENEEVQMHDLIRQ 500

[Close]

BLAST of CmoCh05G011750 vs. NCBI nr
Match: gi|659070337|ref|XP_008454622.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.9e-73
Identity = 146/231 (63.20%), Postives = 173/231 (74.89%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E+LL+EIL  DLK  N+D+GINIIR+RL SKKVLI +DDVDKLE LE LV GRDWFG GS
Sbjct: 302 ESLLYEILTVDLKVVNIDRGINIIRNRLCSKKVLIVLDDVDKLEQLETLVGGRDWFGQGS 361

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               + I  +N D A+ELFSWHAFKK+ P S Y DLSK  TSYC
Sbjct: 362 RIMVTTRNKHLLSSHGFDEIHNILGLNEDKAIELFSWHAFKKNSPSSNYXDLSKRATSYC 421

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLCTRD Q  W SILDEFENSL+KDI DI Q+SFDGLE+K  +IF DI
Sbjct: 422 KGHPLALVVLGSFLCTRD-QVEWCSILDEFENSLNKDIKDILQLSFDGLEDKIKDIFLDI 481

Query: 187 SCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEKV Y+KN+L++CH+NLDFGIIV +DLSL+ ++N KV+MYDL++Q
Sbjct: 482 SCLLVGEKVKYVKNMLSACHVNLDFGIIVLMDLSLMTIENDKVQMYDLIKQ 531

[Close]

BLAST of CmoCh05G011750 vs. NCBI nr
Match: gi|307135796|gb|ADN33675.1| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 280.4 bits (716), Expect = 2.7e-72
Identity = 144/231 (62.34%), Postives = 173/231 (74.89%), Query Frame = 1


Query: 7   ENLLHEILKEDLKFGNLDKGINIIRHRLRSKKVLIAVDDVDKLEPLEALVSGRDWFGPGS 66
           E+LL+EIL  DLK  NLD+GINIIR+RL SKKVLI +DDVDKLE LEALV G DWFG GS
Sbjct: 280 ESLLYEILMVDLKVVNLDRGINIIRNRLCSKKVLIVLDDVDKLEQLEALVGGCDWFGKGS 339

Query: 67  --------------------YGIRRMNHDDALELFSWHAFKKSHPPSTYIDLSKCVTSYC 126
                               + I  +N D A+ELFSWHAFKK+ P S Y+DLSK  TSYC
Sbjct: 340 RIIVTTRNKHLLFSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYC 399

Query: 127 KGQPLALAVLGSFLCTRDDQTYWRSILDEFENSLSKDISDIFQISFDGLEEKEPEIFFDI 186
           KG PLAL VLGSFLC RD Q  W SILDEFENSL+KDI DI Q+SFDGLE+K  +IF DI
Sbjct: 400 KGHPLALVVLGSFLCIRD-QAEWCSILDEFENSLNKDIKDILQLSFDGLEDKIKDIFLDI 459

Query: 187 SCFSMGEKVDYIKNILNSCHLNLDFGIIVPVDLSLIMVKNHKVEMYDLVQQ 218
           SC  +GEKV+Y+K++L +CH+NLDFG+IV +DLSLI ++N KV+M+DL++Q
Sbjct: 460 SCLLVGEKVEYVKDMLGACHVNLDFGVIVLMDLSLITIENDKVQMHDLIKQ 509

The following BLAST results are available for this feature:

BLAST of CmoCh05G011750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMVRN_NICGU	4.8e-37	38.56	TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	[more]
RLM1B_ARATH	8.8e-23	31.02	Disease resistance protein RML1B OS=Arabidopsis thaliana GN=RLM1B PE=2 SV=1	[more]
WRK16_ARATH	9.7e-22	29.39	Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=...	[more]
Y4117_ARATH	1.3e-21	31.46	Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g111...	[more]
RPP4_ARATH	1.7e-21	31.80	Disease resistance protein RPP4 OS=Arabidopsis thaliana GN=RPP4 PE=1 SV=1	[more]

BLAST of CmoCh05G011750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLK3_CUCSA	8.7e-78	65.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1	[more]
E5GB33_CUCME	1.9e-72	62.34	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LLL0_CUCSA	4.3e-69	59.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1	[more]
A0A0A0LFS4_CUCSA	2.5e-64	57.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1	[more]
A0A0A0LJM0_CUCSA	1.3e-60	62.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1	[more]

BLAST of CmoCh05G011750 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G36930.2	2.2e-32	33.62	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT4G12010.1	1.2e-30	33.47	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT5G17680.1	1.2e-30	36.97	disease resistance protein (TIR-NBS-LRR class), putative	[more]
AT5G18360.1	3.0e-29	35.35	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT5G46450.1	3.9e-29	36.13	Disease resistance protein (TIR-NBS-LRR class) family	[more]

BLAST of CmoCh05G011750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070453\|ref\|XP_008455171.1\|	3.9e-79	67.10	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|778666709\|ref\|XP_011648797.1\|	1.2e-77	65.80	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700205747\|gb\|KGN60866.1\|	1.2e-77	65.80	hypothetical protein Csa_2G020890 [Cucumis sativus]	[more]
gi\|659070337\|ref\|XP_008454622.1\|	1.9e-73	63.20	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|307135796\|gb\|ADN33675.1\|	2.7e-72	62.34	TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002182	NB-ARC
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0043531	ADP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G011750.1	CmoCh05G011750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002182	NB-ARC	PFAM	PF00931	NB-ARC	coord: 70..174 score: 2.7
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 143..216 score: 3.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..166 score: 1.33
None	No IPR available	PRINTS	PR00364	DISEASERSIST	coord: 33..47 score: 3.9E-8coord: 106..120 score: 3.
None	No IPR available	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 7..216 score: 4.0
None	No IPR available	PANTHER	PTHR11017:SF155	SUBFAMILY NOT NAMED	coord: 7..216 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G011750	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh05G011750	Cucumber (Gy14) v1	cgycmoB0179
CmoCh05G011750	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G011750	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G011750	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G011750	Cucumber (Chinese Long) v2	cmocuB782
CmoCh05G011750	Cucumber (Chinese Long) v2	cmocuB783
CmoCh05G011750	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G011750	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G011750	Watermelon (97103) v1	cmowmB757
CmoCh05G011750	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G011750	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G011750	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G011750	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G011750	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G011750	Silver-seed gourd	carcmoB0974
CmoCh05G011750	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G011750	Watermelon (97103) v2	cmowmbB785