CmoCh05G010880 (gene) Cucurbita moschata (Rifu)

NameCmoCh05G010880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBED zinc finger,hAT family dimerization domain
LocationCmo_Chr05 : 8719193 .. 8722346 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAATGGCCAAATTCGCAGCCGAGCCAACCCCAATTCCAATTCCAAATCCAAATCCAAATCCACACCCTTCCTCTCTGCTCAAGCTCGCTCAGTCCCCACCCAGATCGCCAGCGGCTCTCCTCAAAGCCCCTTTTTGCTTTTCAACTCTCTCTCGGCTTTGATCCGGCTAAGATCCATCTTGCGCCGCTCCAACCTTCTCCCCCCTTCCTCATCACTTCAATAGTGTTTGATCGGACCCCATTTCCCGGCTTCCGACGAACCCAACTCGTCAAAAATTTCACTGAATTTTCCTTCCTAATTTACTACCCATTTCGACTCCTCCAACGTGGTGGGTTCGAGTTTTTGTTCAAATTGGGAAATGGGTTTCTGTTTCTTCGGCCGTCTTTTGGAAGAACCCTTTAATGGAGTTCCGTTTTTGACAATTGGCTCCTCGTTGGAATATGGGGCGGAAGTGTTCATGTTTCAGCTTTCAGTTCCATGTATGTCGGGGTAAGTCGTTTACTTCAGCTGCTGCTGCTGAAATCTTTTGTTCCACTGTTCTTAGTTTCTGCTCTTATTTGGATTGTAGCTTGAATGCTTGTTGATGGCGTTAGTATTATGTAGCTTTGTGATCAGTAGATGAGCTTGAAATCACCAACTAACCGACTGGGATTGTTTAAACTGATCATTTGTTTACTTTCTATTAGCTTTTCCAGACTTAAATCCTCTGTAAATACTTAGAGATTAGACTGAATGATGCATTATCATCAATAAAATTACTCCAATTTTGTTTGAGCACTCTGTTTCTGAAGGGACCTTATGGTTGGGAAAAGGAATCCCATGGTTTTGAGTGATCTTGACACAGTTCAGTTTGGTGTAGAACCTTGTAGTCTCTTGCTTGAATCCTTGACTCGACGCTTGCCGTTGATGGAGGATTCAAGGGAAGAACATGAGGGGTAGTTTGGAGCAGCTTACACTAAACCAAAACAATCAAGACCGCCATAGCCCATTGCTAGCAAATATTGTTTTCTTTGAGTTTTCTCTTTCGAACTTTTCCTCAAGATTTTTAAAATGTGTCTGCTAGGAAGAGGTTTTCACACCCTTATGAAGAATGCTTCGTTCTCCACCCCAACTGATATTGGATCTTACAATCCACCCCTTTGTGGCTCAACATCCTTGTTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCTCCCAATCCACCCCCCTTCAAGGCCCAACGTCCTTGCTGACACATCTTCTCGTGTACACCCCCCTTCGAAGCTCAGCCTCCTTGCTGAAACATCGCTCGATGTCTGGCTCTGATACCATTTGTAACAGCCCAAGACCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCTCGCTCAAAACAGAGCATCGATTCTCGATTTCAAGCCCGAGATTCCAAGAATTGGATAGTTCAATCGAGGAAAAAGACTACCACCCCAACAACCTGCTTTTGCTTTCAAGAACCTGAAAGGCTTGAAGGTTTGAACCTCAACCAGCCACAGAACGTGGAAGATCAAGAATTTTGAATGAAAATAGATCTTCCAATGTTCAATGGAAAAGCTAAGCAGAAAACAAACAACTAGAAATACTATCAGAAAGTAAAATTTGAAAGTACTAAATGTTAGGCTTAAAATTCCCAGCTCAAGAACTTAAATGACCATTCGACGTCCAATCGACAGGATCGAAAATGGCCTTGATGTTCAATTCTTCTTTCTTATCCTTCCCATTTCTTATTTCATTTTTGGTGTTAGACAGGGACTGTTAATGGGAAAGCAGGAAACCAAATGGACTGGAATGTGAATAATGCATTCAAAAAAGGTGTTCATATACTTATGTATGATGTAATTTGCCAATGGTCTTGTTTGTGTATTGCTTCGTTGAATGTTGGCTCTGTGCAAAGTTAAGATAGTTCATTTTAATGAATGTAGCGTTTCTTTGTGTTCCTGCAAGTAGATTTGGAACCCAAGTCCATGATGGATATGTCACTGATACCAAGCATTGACCCAATTGATATCGATTTCGGCTCGTCTGACAAGGGGAATCCAAATCCTTCAGCAAAGCCAAGAAAAAAGACATTGACATCAGTTTATCTCAAATTTTTTGAGACTGCTGCTGATGGGAAAAGCAGAAGATGCAAGTTTTGTGGACAGAGCTACTGCATTGGAACGGCTACTGGTAAATTTTTACTTCAAAACATGATGTCGAGGTTCGACTTAAAAGAGTTTTGTGTTCCAGAATTTGTTTTTGTAACGGTCCAAGCCCACCGCTAGTGGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTTCTAGGGAGAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACTAATGTGGGATCTCACAATCCATCCCCCTTCGGGGTCCAATGTCCTCGCTGGCACTCGTTCTCTTCTCCAATCGATGTGGGACCCCCACTAAATTCACTCTCCTTCGGGGCCCAGTGTCCTTGGCACATCGCCTCATATCATCCCCTTTGGGACTCAGCCTCCTCGCTGACACATCGCTTGGTGTTTGGCTCTGATACCATTTGTAACGGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTATTGTCCTCTTTGGGCTTTTCCCTTTCGGGTTTCCCCTTAAAGTTCTTAAAACGCGTCTGCTAGGGAGAGATTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCTCTAACCAATGTGGGATCTCATAATCCACCTCCCTTCGGGGTCCAACGTTCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCACAAAATCCACTCCCTTCATGGCCCAGCATCCTTGTTGGCGCATCGCCTAGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAACAGATATTGTCCTTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAGGTTTTTAAGACGCATCTAGTAGGGAGAGGTTCCACACCCTTATAAAGGGTGTTTTGTTCTCCTCCCCAACCAACGTGCTCACAGTTTTGTTCCATTATTTTAGCACCTGTTTGTCTTTTCATTTGTGATGATAAATCTTTTCATTGGAACAGGCAATTTGAGATGA

mRNA sequence

AAAAAAATGGCCAAATTCGCAGCCGAGCCAACCCCAATTCCAATTCCAAATCCAAATCCAAATCCACACCCTTCCTCTCTGCTCAAGCTCGCTCAGTCCCCACCCAGATCGCCAGCGGCTCTCCTCAAAGCCCCTTTTTGCTTTTCAACTCTCTCTCGGCTTTGATCCGGCTAAGATCCATCTTGCGCCGCTCCAACCTTCTCCCCCCTTCCTCATCACTTCAATAGTGTTTGATCGGACCCCATTTCCCGGCTTCCGACGAACCCAACTCGTCAAAAATTTCACTGAATTTTCCTTCCTAATTTACTACCCATTTCGACTCCTCCAACGTGGTGGGTTCGAGTTTTTGTTCAAATTGGGAAATGGGTTTCTGTTTCTTCGGCCGTCTTTTGGAAGAACCCTTTAATGGAGTTCCGTTTTTGACAATTGGCTCCTCGTTGGAATATGGGGCGGAAGTGTTCATGTTTCAGCTTTCAGTTCCATGTATGTCGGGATTTGGAACCCAAGTCCATGATGGATATGTCACTGATACCAAGCATTGACCCAATTGATATCGATTTCGGCTCGTCTGACAAGGGGAATCCAAATCCTTCAGCAAAGCCAAGAAAAAAGACATTGACATCAGTTTATCTCAAATTTTTTGAGACTGCTGCTGATGGGAAAAGCAGAAGATGCAAGTTTTGTGGACAGAGCTACTGCATTGGAACGGCTACTGGCAATTTGAGATGA

Coding sequence (CDS)

ATGGGGCGGAAGTGTTCATGTTTCAGCTTTCAGTTCCATGTATGTCGGGATTTGGAACCCAAGTCCATGATGGATATGTCACTGATACCAAGCATTGACCCAATTGATATCGATTTCGGCTCGTCTGACAAGGGGAATCCAAATCCTTCAGCAAAGCCAAGAAAAAAGACATTGACATCAGTTTATCTCAAATTTTTTGAGACTGCTGCTGATGGGAAAAGCAGAAGATGCAAGTTTTGTGGACAGAGCTACTGCATTGGAACGGCTACTGGCAATTTGAGATGA
BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A0A0LGZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034510 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.8e-31
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1

Query: 12  FHVCRDLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAAD 71
           F   +DLEPKSMMD+SLIP ++PIDID  SSDKG+PN SAKPRKKT+TSVYLKFFETAAD
Sbjct: 24  FKTFKDLEPKSMMDVSLIPHVEPIDIDLRSSDKGSPNTSAKPRKKTMTSVYLKFFETAAD 83

Query: 72  GKSRRCKFCGQSYCIGTATGNL 94
           GKSRRCKFCGQSY I TATGNL
Sbjct: 84  GKSRRCKFCGQSYSIATATGNL 105

BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A067FPZ7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1

Query: 16  RDLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAADGKSR 75
           +++EPK MMDM+LIPSIDPIDI  GSS+KGN  PSAKPRKKT+TSVYLKFFETA DGKSR
Sbjct: 28  KEVEPKHMMDMTLIPSIDPIDIGLGSSEKGNAAPSAKPRKKTMTSVYLKFFETAPDGKSR 87

Query: 76  RCKFCGQSYCIGTATGNL 94
           RCKFCGQSY I TATGNL
Sbjct: 88  RCKFCGQSYSIATATGNL 105

BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A067FDW9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1

Query: 17  DLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAADGKSRR 76
           ++EPK MMDM+LIPSIDPIDI  GSS+KGN  PSAKPRKKT+TSVYLKFFETA DGKSRR
Sbjct: 31  EVEPKHMMDMTLIPSIDPIDIGLGSSEKGNAAPSAKPRKKTMTSVYLKFFETAPDGKSRR 90

Query: 77  CKFCGQSYCIGTATGNL 94
           CKFCGQSY I TATGNL
Sbjct: 91  CKFCGQSYSIATATGNL 107

BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A067FDR4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1

Query: 17 DLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAADGKSRR 76
          ++EPK MMDM+LIPSIDPIDI  GSS+KGN  PSAKPRKKT+TSVYLKFFETA DGKSRR
Sbjct: 16 EVEPKHMMDMTLIPSIDPIDIGLGSSEKGNAAPSAKPRKKTMTSVYLKFFETAPDGKSRR 75

Query: 77 CKFCGQSYCIGTATGNL 94
          CKFCGQSY I TATGNL
Sbjct: 76 CKFCGQSYSIATATGNL 92

BLAST of CmoCh05G010880 vs. TrEMBL
Match: V4TL96_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019100mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1

Query: 17  DLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAADGKSRR 76
           ++EPK MMDM+LIPSIDPIDI  GSS+KGN  PSAKPRKKT+TSVYLKFFETA DGKSRR
Sbjct: 31  EVEPKHMMDMTLIPSIDPIDIGLGSSEKGNAAPSAKPRKKTMTSVYLKFFETAPDGKSRR 90

Query: 77  CKFCGQSYCIGTATGNL 94
           CKFCGQSY I TATGNL
Sbjct: 91  CKFCGQSYSIATATGNL 107

BLAST of CmoCh05G010880 vs. TAIR10
Match: AT1G18560.1 (AT1G18560.1 BED zinc finger ;hAT family dimerisation domain)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 12 FHVCRDLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAAD 71
          F   +++EPK+MMDM+L+P  DPIDI  GSSDK N  P    RKKT+TSVYLK+FETA D
Sbjct: 9  FKTYKEMEPKAMMDMTLVPHSDPIDIGLGSSDKSNSVPPK--RKKTMTSVYLKYFETAPD 68

Query: 72 GKSRRCKFCGQSYCIGTATGNL 94
           K+R+CKFCGQSY I TATGNL
Sbjct: 69 SKTRKCKFCGQSYSIATATGNL 88

BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|659070132|ref|XP_008453558.1| (PREDICTED: putative AC transposase isoform X5 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-31
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 1

Query: 12 FHVCRDLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAAD 71
          F   +DLEPKS+MD++LIP IDPIDID GSSDKG+PN SAKPRKKT+TSVYLK+FETAAD
Sbjct: 9  FKTSKDLEPKSVMDVALIPHIDPIDIDLGSSDKGSPNTSAKPRKKTMTSVYLKYFETAAD 68

Query: 72 GKSRRCKFCGQSYCIGTATGNL 94
          GKSRRCKFCGQSY I TATGNL
Sbjct: 69 GKSRRCKFCGQSYSIATATGNL 90

BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|778667061|ref|XP_011648865.1| (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 8.3e-31
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1

Query: 12 FHVCRDLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAAD 71
          F   +DLEPKSMMD+SLIP ++PIDID  SSDKG+PN SAKPRKKT+TSVYLKFFETAAD
Sbjct: 9  FKTFKDLEPKSMMDVSLIPHVEPIDIDLRSSDKGSPNTSAKPRKKTMTSVYLKFFETAAD 68

Query: 72 GKSRRCKFCGQSYCIGTATGNL 94
          GKSRRCKFCGQSY I TATGNL
Sbjct: 69 GKSRRCKFCGQSYSIATATGNL 90

BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|778667051|ref|XP_011648862.1| (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X1 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 8.3e-31
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1

Query: 12  FHVCRDLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAAD 71
           F   +DLEPKSMMD+SLIP ++PIDID  SSDKG+PN SAKPRKKT+TSVYLKFFETAAD
Sbjct: 24  FKTFKDLEPKSMMDVSLIPHVEPIDIDLRSSDKGSPNTSAKPRKKTMTSVYLKFFETAAD 83

Query: 72  GKSRRCKFCGQSYCIGTATGNL 94
           GKSRRCKFCGQSY I TATGNL
Sbjct: 84  GKSRRCKFCGQSYSIATATGNL 105

BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|659070130|ref|XP_008453550.1| (PREDICTED: putative AC transposase isoform X4 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1

Query: 17 DLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAADGKSRR 76
          DLEPKS+MD++LIP IDPIDID GSSDKG+PN SAKPRKKT+TSVYLK+FETAADGKSRR
Sbjct: 16 DLEPKSVMDVALIPHIDPIDIDLGSSDKGSPNTSAKPRKKTMTSVYLKYFETAADGKSRR 75

Query: 77 CKFCGQSYCIGTATGNL 94
          CKFCGQSY I TATGNL
Sbjct: 76 CKFCGQSYSIATATGNL 92

BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|659070128|ref|XP_008453542.1| (PREDICTED: putative AC transposase isoform X3 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1

Query: 17 DLEPKSMMDMSLIPSIDPIDIDFGSSDKGNPNPSAKPRKKTLTSVYLKFFETAADGKSRR 76
          DLEPKS+MD++LIP IDPIDID GSSDKG+PN SAKPRKKT+TSVYLK+FETAADGKSRR
Sbjct: 16 DLEPKSVMDVALIPHIDPIDIDLGSSDKGSPNTSAKPRKKTMTSVYLKYFETAADGKSRR 75

Query: 77 CKFCGQSYCIGTATGNL 94
          CKFCGQSY I TATG +
Sbjct: 76 CKFCGQSYSIATATGEI 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LGZ3_CUCSA5.8e-3181.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034510 PE=4 SV=1[more]
A0A067FPZ7_CITSI3.2e-2982.05Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1[more]
A0A067FDW9_CITSI5.4e-2983.12Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1[more]
A0A067FDR4_CITSI5.4e-2983.12Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1[more]
V4TL96_9ROSI5.4e-2983.12Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019100mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G18560.11.1e-2565.85 BED zinc finger ;hAT family dimerisation domain[more]
Match NameE-valueIdentityDescription
gi|659070132|ref|XP_008453558.1|2.9e-3181.71PREDICTED: putative AC transposase isoform X5 [Cucumis melo][more]
gi|778667061|ref|XP_011648865.1|8.3e-3181.71PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucu... [more]
gi|778667051|ref|XP_011648862.1|8.3e-3181.71PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X1 [Cucu... [more]
gi|659070130|ref|XP_008453550.1|1.4e-3085.71PREDICTED: putative AC transposase isoform X4 [Cucumis melo][more]
gi|659070128|ref|XP_008453542.1|1.2e-2983.12PREDICTED: putative AC transposase isoform X3 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G010880.1CmoCh05G010880.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23272BED FINGER-RELATEDcoord: 19..94
score: 1.7
NoneNo IPR availablePANTHERPTHR23272:SF21BED ZINC FINGER AND HAT DIMERIZATION DOMAIN-CONTAINING PROTEINcoord: 19..94
score: 1.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G010880Cp4.1LG11g08830Cucurbita pepo (Zucchini)cmocpeB721
The following gene(s) are paralogous to this gene:

None