CmoCh05G010880 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAATGGCCAAATTCGCAGCCGAGCCAACCCCAATTCCAATTCCAAATCCAAATCCAAATCCACACCCTTCCTCTCTGCTCAAGCTCGCTCAGTCCCCACCCAGATCGCCAGCGGCTCTCCTCAAAGCCCCTTTTTGCTTTTCAACTCTCTCTCGGCTTTGATCCGGCTAAGATCCATCTTGCGCCGCTCCAACCTTCTCCCCCCTTCCTCATCACTTCAATAGTGTTTGATCGGACCCCATTTCCCGGCTTCCGACGAACCCAACTCGTCAAAAATTTCACTGAATTTTCCTTCCTAATTTACTACCCATTTCGACTCCTCCAACGTGGTGGGTTCGAGTTTTTGTTCAAATTGGGAAATGGGTTTCTGTTTCTTCGGCCGTCTTTTGGAAGAACCCTTTAATGGAGTTCCGTTTTTGACAATTGGCTCCTCGTTGGAATATGGGGCGGAAGTGTTCATGTTTCAGCTTTCAGTTCCATGTATGTCGGGGTAAGTCGTTTACTTCAGCTGCTGCTGCTGAAATCTTTTGTTCCACTGTTCTTAGTTTCTGCTCTTATTTGGATTGTAGCTTGAATGCTTGTTGATGGCGTTAGTATTATGTAGCTTTGTGATCAGTAGATGAGCTTGAAATCACCAACTAACCGACTGGGATTGTTTAAACTGATCATTTGTTTACTTTCTATTAGCTTTTCCAGACTTAAATCCTCTGTAAATACTTAGAGATTAGACTGAATGATGCATTATCATCAATAAAATTACTCCAATTTTGTTTGAGCACTCTGTTTCTGAAGGGACCTTATGGTTGGGAAAAGGAATCCCATGGTTTTGAGTGATCTTGACACAGTTCAGTTTGGTGTAGAACCTTGTAGTCTCTTGCTTGAATCCTTGACTCGACGCTTGCCGTTGATGGAGGATTCAAGGGAAGAACATGAGGGGTAGTTTGGAGCAGCTTACACTAAACCAAAACAATCAAGACCGCCATAGCCCATTGCTAGCAAATATTGTTTTCTTTGAGTTTTCTCTTTCGAACTTTTCCTCAAGATTTTTAAAATGTGTCTGCTAGGAAGAGGTTTTCACACCCTTATGAAGAATGCTTCGTTCTCCACCCCAACTGATATTGGATCTTACAATCCACCCCTTTGTGGCTCAACATCCTTGTTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCTCCCAATCCACCCCCCTTCAAGGCCCAACGTCCTTGCTGACACATCTTCTCGTGTACACCCCCCTTCGAAGCTCAGCCTCCTTGCTGAAACATCGCTCGATGTCTGGCTCTGATACCATTTGTAACAGCCCAAGACCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCTCGCTCAAAACAGAGCATCGATTCTCGATTTCAAGCCCGAGATTCCAAGAATTGGATAGTTCAATCGAGGAAAAAGACTACCACCCCAACAACCTGCTTTTGCTTTCAAGAACCTGAAAGGCTTGAAGGTTTGAACCTCAACCAGCCACAGAACGTGGAAGATCAAGAATTTTGAATGAAAATAGATCTTCCAATGTTCAATGGAAAAGCTAAGCAGAAAACAAACAACTAGAAATACTATCAGAAAGTAAAATTTGAAAGTACTAAATGTTAGGCTTAAAATTCCCAGCTCAAGAACTTAAATGACCATTCGACGTCCAATCGACAGGATCGAAAATGGCCTTGATGTTCAATTCTTCTTTCTTATCCTTCCCATTTCTTATTTCATTTTTGGTGTTAGACAGGGACTGTTAATGGGAAAGCAGGAAACCAAATGGACTGGAATGTGAATAATGCATTCAAAAAAGGTGTTCATATACTTATGTATGATGTAATTTGCCAATGGTCTTGTTTGTGTATTGCTTCGTTGAATGTTGGCTCTGTGCAAAGTTAAGATAGTTCATTTTAATGAATGTAGCGTTTCTTTGTGTTCCTGCAAGTAGATTTGGAACCCAAGTCCATGATGGATATGTCACTGATACCAAGCATTGACCCAATTGATATCGATTTCGGCTCGTCTGACAAGGGGAATCCAAATCCTTCAGCAAAGCCAAGAAAAAAGACATTGACATCAGTTTATCTCAAATTTTTTGAGACTGCTGCTGATGGGAAAAGCAGAAGATGCAAGTTTTGTGGACAGAGCTACTGCATTGGAACGGCTACTGGTAAATTTTTACTTCAAAACATGATGTCGAGGTTCGACTTAAAAGAGTTTTGTGTTCCAGAATTTGTTTTTGTAACGGTCCAAGCCCACCGCTAGTGGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTTCTAGGGAGAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACTAATGTGGGATCTCACAATCCATCCCCCTTCGGGGTCCAATGTCCTCGCTGGCACTCGTTCTCTTCTCCAATCGATGTGGGACCCCCACTAAATTCACTCTCCTTCGGGGCCCAGTGTCCTTGGCACATCGCCTCATATCATCCCCTTTGGGACTCAGCCTCCTCGCTGACACATCGCTTGGTGTTTGGCTCTGATACCATTTGTAACGGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTATTGTCCTCTTTGGGCTTTTCCCTTTCGGGTTTCCCCTTAAAGTTCTTAAAACGCGTCTGCTAGGGAGAGATTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCTCTAACCAATGTGGGATCTCATAATCCACCTCCCTTCGGGGTCCAACGTTCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCACAAAATCCACTCCCTTCATGGCCCAGCATCCTTGTTGGCGCATCGCCTAGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAACAGATATTGTCCTTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAGGTTTTTAAGACGCATCTAGTAGGGAGAGGTTCCACACCCTTATAAAGGGTGTTTTGTTCTCCTCCCCAACCAACGTGCTCACAGTTTTGTTCCATTATTTTAGCACCTGTTTGTCTTTTCATTTGTGATGATAAATCTTTTCATTGGAACAGGCAATTTGAGATGA AAAAAAATGGCCAAATTCGCAGCCGAGCCAACCCCAATTCCAATTCCAAATCCAAATCCAAATCCACACCCTTCCTCTCTGCTCAAGCTCGCTCAGTCCCCACCCAGATCGCCAGCGGCTCTCCTCAAAGCCCCTTTTTGCTTTTCAACTCTCTCTCGGCTTTGATCCGGCTAAGATCCATCTTGCGCCGCTCCAACCTTCTCCCCCCTTCCTCATCACTTCAATAGTGTTTGATCGGACCCCATTTCCCGGCTTCCGACGAACCCAACTCGTCAAAAATTTCACTGAATTTTCCTTCCTAATTTACTACCCATTTCGACTCCTCCAACGTGGTGGGTTCGAGTTTTTGTTCAAATTGGGAAATGGGTTTCTGTTTCTTCGGCCGTCTTTTGGAAGAACCCTTTAATGGAGTTCCGTTTTTGACAATTGGCTCCTCGTTGGAATATGGGGCGGAAGTGTTCATGTTTCAGCTTTCAGTTCCATGTATGTCGGGATTTGGAACCCAAGTCCATGATGGATATGTCACTGATACCAAGCATTGACCCAATTGATATCGATTTCGGCTCGTCTGACAAGGGGAATCCAAATCCTTCAGCAAAGCCAAGAAAAAAGACATTGACATCAGTTTATCTCAAATTTTTTGAGACTGCTGCTGATGGGAAAAGCAGAAGATGCAAGTTTTGTGGACAGAGCTACTGCATTGGAACGGCTACTGGCAATTTGAGATGA ATGGGGCGGAAGTGTTCATGTTTCAGCTTTCAGTTCCATGTATGTCGGGATTTGGAACCCAAGTCCATGATGGATATGTCACTGATACCAAGCATTGACCCAATTGATATCGATTTCGGCTCGTCTGACAAGGGGAATCCAAATCCTTCAGCAAAGCCAAGAAAAAAGACATTGACATCAGTTTATCTCAAATTTTTTGAGACTGCTGCTGATGGGAAAAGCAGAAGATGCAAGTTTTGTGGACAGAGCTACTGCATTGGAACGGCTACTGGCAATTTGAGATGA
BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A0A0LGZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034510 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 5.8e-31 Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1
BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A067FPZ7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29 Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1
BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A067FDW9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29 Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
BLAST of CmoCh05G010880 vs. TrEMBL
Match: A0A067FDR4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008805mg PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29 Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
BLAST of CmoCh05G010880 vs. TrEMBL
Match: V4TL96_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019100mg PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29 Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
BLAST of CmoCh05G010880 vs. TAIR10
Match: AT1G18560.1 (AT1G18560.1 BED zinc finger ;hAT family dimerisation domain) HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25 Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|659070132|ref|XP_008453558.1| (PREDICTED: putative AC transposase isoform X5 [Cucumis melo]) HSP 1 Score: 142.9 bits (359), Expect = 2.9e-31 Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 1
BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|778667061|ref|XP_011648865.1| (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucumis sativus]) HSP 1 Score: 141.4 bits (355), Expect = 8.3e-31 Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1
BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|778667051|ref|XP_011648862.1| (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X1 [Cucumis sativus]) HSP 1 Score: 141.4 bits (355), Expect = 8.3e-31 Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1
BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|659070130|ref|XP_008453550.1| (PREDICTED: putative AC transposase isoform X4 [Cucumis melo]) HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30 Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1
BLAST of CmoCh05G010880 vs. NCBI nr
Match: gi|659070128|ref|XP_008453542.1| (PREDICTED: putative AC transposase isoform X3 [Cucumis melo]) HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29 Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |