CmoCh05G010860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G010860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BED zinc finger,hAT family dimerization domain
Location	Cmo_Chr05 : 8716423 .. 8716686 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGAGACTTCTTGGCCGTGCAGGCAACGTCGGTGGCTCCTGAAGATCTGTTCTGCGGGAGAGGCGACGACATCGAGAAACAAAGATATTGTATGCCTCATGATGCCACACCAGCTCTCCTTTGTATCAAATCATGGATTCAAAGTGGTTTCAAGATGAATTACAAGTCTAATGAGATTGAGTATGAGATGCTGATTGAACTAGCTGCTACATCAATTGTCGATAGCAATTCTGCTGGTTCTGACAAGAAATCAAAGTAA

mRNA sequence

ATGGCTCGAGACTTCTTGGCCGTGCAGGCAACGTCGGTGGCTCCTGAAGATCTGTTCTGCGGGAGAGGCGACGACATCGAGAAACAAAGATATTGTATGCCTCATGATGCCACACCAGCTCTCCTTTGTATCAAATCATGGATTCAAAGTGGTTTCAAGATGAATTACAAGTCTAATGAGATTGAGTATGAGATGCTGATTGAACTAGCTGCTACATCAATTGTCGATAGCAATTCTGCTGGTTCTGACAAGAAATCAAAGTAA

Coding sequence (CDS)

ATGGCTCGAGACTTCTTGGCCGTGCAGGCAACGTCGGTGGCTCCTGAAGATCTGTTCTGCGGGAGAGGCGACGACATCGAGAAACAAAGATATTGTATGCCTCATGATGCCACACCAGCTCTCCTTTGTATCAAATCATGGATTCAAAGTGGTTTCAAGATGAATTACAAGTCTAATGAGATTGAGTATGAGATGCTGATTGAACTAGCTGCTACATCAATTGTCGATAGCAATTCTGCTGGTTCTGACAAGAAATCAAAGTAA

Homology

[Close]

BLAST of CmoCh05G010860 vs. TrEMBL
Match: A0A0A0LGZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034510 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-36
Identity = 73/87 (83.91%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATS+APE+LFCGRGDDI+KQRYCMPHD+TPALLCIKSWIQSGFK+ YKS+E
Sbjct: 612 MARDFLAVQATSLAPEELFCGRGDDIDKQRYCMPHDSTPALLCIKSWIQSGFKLKYKSSE 671

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+EL+ATS VDS++AGSDKKSK
Sbjct: 672 IDYERLMELSATSTVDSSTAGSDKKSK 698

[Close]

BLAST of CmoCh05G010860 vs. TrEMBL
Match: A0A061G1J7_THECC (BED zinc finger,hAT family dimerization domain OS=Theobroma cacao GN=TCM_012243 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.6e-29
Identity = 60/87 (68.97%), Postives = 73/87 (83.91%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATSV PE+LFC +GD+I+KQR+CMPHD+T A+LCIKSW Q G K+ YKS+E
Sbjct: 594 MARDFLAVQATSVKPEELFCSKGDEIDKQRFCMPHDSTQAILCIKSWTQGGLKLKYKSSE 653

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+ELAA +  D+ SAG DKK K
Sbjct: 654 IDYERLMELAAAAAADNISAGFDKKQK 680

[Close]

BLAST of CmoCh05G010860 vs. TrEMBL
Match: A0A0D2SC04_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008000 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-28
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATSV P++LFC +GD+I+KQR+CMPHD+T A+LCIKSW Q G K+ YKS E
Sbjct: 595 MARDFLAVQATSVKPDELFCSKGDEIDKQRFCMPHDSTQAILCIKSWTQGGLKLKYKSTE 654

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+E+AA +  D +SAG DKK K
Sbjct: 655 IDYERLMEMAAAAAADISSAGIDKKQK 681

[Close]

BLAST of CmoCh05G010860 vs. TrEMBL
Match: A0A0D2P0V7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008000 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-28
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATSV P++LFC +GD+I+KQR+CMPHD+T A+LCIKSW Q G K+ YKS E
Sbjct: 596 MARDFLAVQATSVKPDELFCSKGDEIDKQRFCMPHDSTQAILCIKSWTQGGLKLKYKSTE 655

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+E+AA +  D +SAG DKK K
Sbjct: 656 IDYERLMEMAAAAAADISSAGIDKKQK 682

[Close]

BLAST of CmoCh05G010860 vs. TrEMBL
Match: A0A0B0PVA3_GOSAR (Putative AC transposase OS=Gossypium arboreum GN=F383_15265 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-27
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATSV P++LFC +GD+I+KQR+CMPHD+T A+LCIKSW Q G K+ YKS E
Sbjct: 595 MARDFLAVQATSVKPDELFCSKGDEIDKQRFCMPHDSTQAILCIKSWTQGGLKLKYKSTE 654

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+E+AA +  D + AG DKK K
Sbjct: 655 IDYERLMEMAAAAAADISLAGMDKKQK 681

[Close]

BLAST of CmoCh05G010860 vs. TAIR10
Match: AT1G18560.1 (AT1G18560.1 BED zinc finger ;hAT family dimerisation domain)

HSP 1 Score: 125.2 bits (313), Expect = 2.0e-29
Identity = 51/84 (60.71%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATS APE++FCG+G++I+KQ+YCMPHD+T +++CI+SWI++G K+ YK +E
Sbjct: 602 MARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIEAGMKLKYKCSE 661

Query: 61  IEYEMLIELAATSIVDSNSAGSDK 85
           I+YE L+ELAAT   D+++ G +K
Sbjct: 662 IDYERLMELAATVAADNSAGGLEK 685

[Close]

BLAST of CmoCh05G010860 vs. NCBI nr
Match: gi|778667069|ref|XP_011648867.1| (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X3 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 73/87 (83.91%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATS+APE+LFCGRGDDI+KQRYCMPHD+TPALLCIKSWIQSGFK+ YKS+E
Sbjct: 578 MARDFLAVQATSLAPEELFCGRGDDIDKQRYCMPHDSTPALLCIKSWIQSGFKLKYKSSE 637

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+EL+ATS VDS++AGSDKKSK
Sbjct: 638 IDYERLMELSATSTVDSSTAGSDKKSK 664

[Close]

BLAST of CmoCh05G010860 vs. NCBI nr
Match: gi|778667051|ref|XP_011648862.1| (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X1 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 73/87 (83.91%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATS+APE+LFCGRGDDI+KQRYCMPHD+TPALLCIKSWIQSGFK+ YKS+E
Sbjct: 612 MARDFLAVQATSLAPEELFCGRGDDIDKQRYCMPHDSTPALLCIKSWIQSGFKLKYKSSE 671

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+EL+ATS VDS++AGSDKKSK
Sbjct: 672 IDYERLMELSATSTVDSSTAGSDKKSK 698

[Close]

BLAST of CmoCh05G010860 vs. NCBI nr
Match: gi|659070124|ref|XP_008453529.1| (PREDICTED: putative AC transposase isoform X2 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 73/87 (83.91%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATS+APE+LFCGRGDDI+KQRYCMPHD+TPALLCIKSWIQSGFK+ YKS+E
Sbjct: 611 MARDFLAVQATSLAPEELFCGRGDDIDKQRYCMPHDSTPALLCIKSWIQSGFKLKYKSSE 670

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+EL+ATS VDS++AGSDKKSK
Sbjct: 671 IDYERLMELSATSTVDSSTAGSDKKSK 697

[Close]

BLAST of CmoCh05G010860 vs. NCBI nr
Match: gi|778667061|ref|XP_011648865.1| (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 73/87 (83.91%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATS+APE+LFCGRGDDI+KQRYCMPHD+TPALLCIKSWIQSGFK+ YKS+E
Sbjct: 597 MARDFLAVQATSLAPEELFCGRGDDIDKQRYCMPHDSTPALLCIKSWIQSGFKLKYKSSE 656

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+EL+ATS VDS++AGSDKKSK
Sbjct: 657 IDYERLMELSATSTVDSSTAGSDKKSK 683

[Close]

BLAST of CmoCh05G010860 vs. NCBI nr
Match: gi|659070128|ref|XP_008453542.1| (PREDICTED: putative AC transposase isoform X3 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 73/87 (83.91%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1   MARDFLAVQATSVAPEDLFCGRGDDIEKQRYCMPHDATPALLCIKSWIQSGFKMNYKSNE 60
           MARDFLAVQATS+APE+LFCGRGDDI+KQRYCMPHD+TPALLCIKSWIQSGFK+ YKS+E
Sbjct: 609 MARDFLAVQATSLAPEELFCGRGDDIDKQRYCMPHDSTPALLCIKSWIQSGFKLKYKSSE 668

Query: 61  IEYEMLIELAATSIVDSNSAGSDKKSK 88
           I+YE L+EL+ATS VDS++AGSDKKSK
Sbjct: 669 IDYERLMELSATSTVDSSTAGSDKKSK 695

The following BLAST results are available for this feature:

BLAST of CmoCh05G010860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G010860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGZ3_CUCSA	1.5e-36	83.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034510 PE=4 SV=1	[more]
A0A061G1J7_THECC	8.6e-29	68.97	BED zinc finger,hAT family dimerization domain OS=Theobroma cacao GN=TCM_012243 ...	[more]
A0A0D2SC04_GOSRA	3.3e-28	66.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008000 PE=4 SV=1	[more]
A0A0D2P0V7_GOSRA	3.3e-28	66.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008000 PE=4 SV=1	[more]
A0A0B0PVA3_GOSAR	1.2e-27	65.52	Putative AC transposase OS=Gossypium arboreum GN=F383_15265 PE=4 SV=1	[more]

BLAST of CmoCh05G010860 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18560.1	2.0e-29	60.71	BED zinc finger ;hAT family dimerisation domain	[more]

BLAST of CmoCh05G010860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778667069\|ref\|XP_011648867.1\|	2.1e-36	83.91	PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X3 [Cucu...	[more]
gi\|778667051\|ref\|XP_011648862.1\|	2.1e-36	83.91	PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X1 [Cucu...	[more]
gi\|659070124\|ref\|XP_008453529.1\|	2.1e-36	83.91	PREDICTED: putative AC transposase isoform X2 [Cucumis melo]	[more]
gi\|778667061\|ref\|XP_011648865.1\|	2.1e-36	83.91	PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucu...	[more]
gi\|659070128\|ref\|XP_008453542.1\|	2.1e-36	83.91	PREDICTED: putative AC transposase isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008906	HATC_C_dom
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010860.1	CmoCh05G010860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 1..48 score: 7.9
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 1..50 score: 2.7
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 1..66 score: 6.9
None	No IPR available	PANTHER	PTHR23272:SF21	BED ZINC FINGER AND HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN	coord: 1..66 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G010860	Cucsa.090680	Cucumber (Gy14) v1	cgycmoB0179
CmoCh05G010860	CmaCh12G010290	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G010860	Csa2G034510	Cucumber (Chinese Long) v2	cmocuB784
CmoCh05G010860	ClCG02G014930	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G010860	CSPI02G04690	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G010860	Lsi11G006320	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G010860	Cp4.1LG07g08700	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G010860	MELO3C031531.2	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G010860	CsaV3_2G007070	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G010860	Cla97C02G040730	Watermelon (97103) v2	cmowmbB785
CmoCh05G010860	Bhi06G001333	Wax gourd	cmowgoB0928
CmoCh05G010860	CsGy2G004830	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G010860	Carg23259	Silver-seed gourd	carcmoB1191
CmoCh05G010860	Carg12002	Silver-seed gourd	carcmoB0769

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G010860	CmoCh12G010350	Cucurbita moschata (Rifu)	cmocmoB148

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G010860	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G010860	Bottle gourd (USVL1VR-Ls)	cmolsiB702
CmoCh05G010860	Bottle gourd (USVL1VR-Ls)	cmolsiB723
CmoCh05G010860	Cucumber (Gy14) v2	cgybcmoB128
CmoCh05G010860	Melon (DHL92) v3.6.1	cmomedB808
CmoCh05G010860	Silver-seed gourd	carcmoB0101
CmoCh05G010860	Cucumber (Chinese Long) v3	cmocucB0914
CmoCh05G010860	Watermelon (97103) v2	cmowmbB797
CmoCh05G010860	Cucurbita moschata (Rifu)	cmocmoB307
CmoCh05G010860	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G010860	Cucumber (Chinese Long) v2	cmocuB775
CmoCh05G010860	Melon (DHL92) v3.5.1	cmomeB712
CmoCh05G010860	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G010860	Watermelon (97103) v1	cmowmB757