CmoCh05G010200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G010200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone-lysine N-methyltransferase ATX2
Location	Cmo_Chr05 : 8217544 .. 8218303 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGGAAAGCTGGTACTTTATACATCAACCCAAAGAAGTTCGGCACTCTTAGTAAACCTTGCATGAAGGAAATGATATCATTTCTCAATTGCATGGCTCTTAATCATAACAATGACGAGAAGTGCACCAGACATAAGGAAATTCTAAATACTTGCATGGATGCTCAGGTGACTTTCTGCTACTCGTTGATATAATTCGAGAATTATTTATACCCTTCATTGAGTTCTTTGGCCATTTTAAAACTCTACCATGTGATAATTACTTGCTTTTCGATATAATTTGAGAATTTCGTATACTCTTCATGGAGTTCTTTGGCTTTATTAAAACTCTACCATAATTCGAGAATTTCGTATACTCTTCATTGAGTTCTTTGGCCATTTTAAAACTCTACCATGTTATAGTTGCTTGCTTTTCAATATAATTCGAGAATTTTGTATACTTTTCATTGAGTTCTTTGGCCATTTTAAAACTCTACCATGTGATAGTTGCTTTTCGATATAATTTGAAAATTTCGTATACTCTTCATTGAGTTCTTTGACCATTTTAAAACTCTACCATGTGATAGTTACTTGCTTTCCGATATAATTCGAGAATTTCGTATACTCTTCATCGAGTTCTTCGGCCACTGTAAAACTCTACCATGTGATAGTTACTTGCTTTTCGGTCTTTCTTTGTGCGCTGCAGTCCAACCGAAACAGGAAGCCTTGGGGTAGCATTAATTACCACTTGCAGAGGCTTAGCAGGGGAAGAAAGTAG

mRNA sequence

ATGGGTAGGAAAGCTGGTACTTTATACATCAACCCAAAGAAGTTCGGCACTCTTAGTAAACCTTGCATGAAGGAAATGATATCATTTCTCAATTGCATGGCTCTTAATCATAACAATGACGAGAAGTGCACCAGACATAAGGAAATTCTAAATACTTGCATGGATGCTCAGTCCAACCGAAACAGGAAGCCTTGGGGTAGCATTAATTACCACTTGCAGAGGCTTAGCAGGGGAAGAAAGTAG

Coding sequence (CDS)

ATGGGTAGGAAAGCTGGTACTTTATACATCAACCCAAAGAAGTTCGGCACTCTTAGTAAACCTTGCATGAAGGAAATGATATCATTTCTCAATTGCATGGCTCTTAATCATAACAATGACGAGAAGTGCACCAGACATAAGGAAATTCTAAATACTTGCATGGATGCTCAGTCCAACCGAAACAGGAAGCCTTGGGGTAGCATTAATTACCACTTGCAGAGGCTTAGCAGGGGAAGAAAGTAG

Homology

[Close]

BLAST of CmoCh05G010200 vs. TrEMBL
Match: A0A0A0KD09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361270 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 67/80 (83.75%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1   MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
           MGRKAG+L+INPKKFG L+KPCMKEM+SFLNC+ALN NNDEKCTRHKE+LNTCMDAQ+ R
Sbjct: 37  MGRKAGSLFINPKKFGNLNKPCMKEMVSFLNCIALNQNNDEKCTRHKELLNTCMDAQATR 96

Query: 61  NRKPWGSINYHLQRLSRGRK 81
           ++KPWGSINYHLQRL+RGRK
Sbjct: 97  SKKPWGSINYHLQRLNRGRK 116

[Close]

BLAST of CmoCh05G010200 vs. TrEMBL
Match: A0A061GXZ9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041863 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-33
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MG+KAG LYINPKKFGTLSKPCMKEMISFLNC++LN NND KC R K++L+ CMDAQSNR
Sbjct: 1  MGKKAGGLYINPKKFGTLSKPCMKEMISFLNCLSLNKNNDNKCVRQKDLLSACMDAQSNR 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          NRKPWGSINYHLQRL+RGRK
Sbjct: 61 NRKPWGSINYHLQRLNRGRK 80

[Close]

BLAST of CmoCh05G010200 vs. TrEMBL
Match: A0A0D2QSZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G133500 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-32
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MGRKA  LYINPKKFG+L+KPCMKEMISFLNCMALN  NDEKC R K++LN CMDAQS +
Sbjct: 1  MGRKADALYINPKKFGSLTKPCMKEMISFLNCMALNKVNDEKCVRQKDLLNACMDAQSTK 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          NRKPWGSINYHLQRL+RGRK
Sbjct: 61 NRKPWGSINYHLQRLNRGRK 80

[Close]

BLAST of CmoCh05G010200 vs. TrEMBL
Match: M0ZI15_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000442 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.9e-32
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MGRKAGTLYINP+ FG+L KPC KEM+SFLNC+ LNHN DEKC R K +L+TCM+AQS +
Sbjct: 1  MGRKAGTLYINPRNFGSLQKPCAKEMVSFLNCLTLNHNKDEKCGRQKSLLSTCMEAQSGK 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          NRKPWGSINYHLQRLSRGRK
Sbjct: 61 NRKPWGSINYHLQRLSRGRK 80

[Close]

BLAST of CmoCh05G010200 vs. TrEMBL
Match: A0A0V0GYJ3_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.9e-32
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MGRKAGTLYINP+ FG+L KPC KEM+SFLNC+ LNHN DEKC R K +L+TCM+AQS +
Sbjct: 1  MGRKAGTLYINPRNFGSLQKPCAKEMVSFLNCLTLNHNKDEKCGRQKSLLSTCMEAQSGK 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          NRKPWGSINYHLQRLSRGRK
Sbjct: 61 NRKPWGSINYHLQRLSRGRK 80

[Close]

BLAST of CmoCh05G010200 vs. TAIR10
Match: AT1G47278.2 (AT1G47278.2 unknown protein)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-29
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MGRKAG LYINPKK G L+KPCMKEM+SFLNCMALN+  D+KC + K++L+ CM  QS+ 
Sbjct: 12 MGRKAGNLYINPKKLGNLAKPCMKEMVSFLNCMALNNIKDDKCEKQKQLLSVCMQGQSDH 71

Query: 61 NRKPWGSINYHLQRLSRGRK 81
            K WG+INYHLQRL+RGRK
Sbjct: 72 KNKSWGNINYHLQRLTRGRK 91

[Close]

BLAST of CmoCh05G010200 vs. NCBI nr
Match: gi|659129861|ref|XP_008464883.1| (PREDICTED: uncharacterized protein LOC103502643 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-35
Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MGRKAG+L+INPKKFG LSKPCMKEM+SFLNC++LN NNDEKCTRHKE+LNTCMDAQ+NR
Sbjct: 1  MGRKAGSLFINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRHKELLNTCMDAQANR 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          N+KPWGSINY LQRLSRGRK
Sbjct: 61 NKKPWGSINYQLQRLSRGRK 80

[Close]

BLAST of CmoCh05G010200 vs. NCBI nr
Match: gi|449452947|ref|XP_004144220.1| (PREDICTED: uncharacterized protein LOC101212239 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 67/80 (83.75%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MGRKAG+L+INPKKFG L+KPCMKEM+SFLNC+ALN NNDEKCTRHKE+LNTCMDAQ+ R
Sbjct: 1  MGRKAGSLFINPKKFGNLNKPCMKEMVSFLNCIALNQNNDEKCTRHKELLNTCMDAQATR 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          ++KPWGSINYHLQRL+RGRK
Sbjct: 61 SKKPWGSINYHLQRLNRGRK 80

[Close]

BLAST of CmoCh05G010200 vs. NCBI nr
Match: gi|700192361|gb|KGN47565.1| (hypothetical protein Csa_6G361270 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 67/80 (83.75%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1   MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
           MGRKAG+L+INPKKFG L+KPCMKEM+SFLNC+ALN NNDEKCTRHKE+LNTCMDAQ+ R
Sbjct: 37  MGRKAGSLFINPKKFGNLNKPCMKEMVSFLNCIALNQNNDEKCTRHKELLNTCMDAQATR 96

Query: 61  NRKPWGSINYHLQRLSRGRK 81
           ++KPWGSINYHLQRL+RGRK
Sbjct: 97  SKKPWGSINYHLQRLNRGRK 116

[Close]

BLAST of CmoCh05G010200 vs. NCBI nr
Match: gi|590589445|ref|XP_007016453.1| (Uncharacterized protein TCM_041863 [Theobroma cacao])

HSP 1 Score: 149.4 bits (376), Expect = 2.6e-33
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MG+KAG LYINPKKFGTLSKPCMKEMISFLNC++LN NND KC R K++L+ CMDAQSNR
Sbjct: 1  MGKKAGGLYINPKKFGTLSKPCMKEMISFLNCLSLNKNNDNKCVRQKDLLSACMDAQSNR 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          NRKPWGSINYHLQRL+RGRK
Sbjct: 61 NRKPWGSINYHLQRLNRGRK 80

[Close]

BLAST of CmoCh05G010200 vs. NCBI nr
Match: gi|802553819|ref|XP_012065017.1| (PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas])

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-33
Identity = 64/80 (80.00%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1  MGRKAGTLYINPKKFGTLSKPCMKEMISFLNCMALNHNNDEKCTRHKEILNTCMDAQSNR 60
          MGRKAGT+YINPK+FG+LSKPCMKEMISFLNC++LNH+NDEKC R K++LN CMDAQ+++
Sbjct: 1  MGRKAGTVYINPKRFGSLSKPCMKEMISFLNCLSLNHSNDEKCVRQKDLLNACMDAQTSK 60

Query: 61 NRKPWGSINYHLQRLSRGRK 81
          +RKPWGSINYHLQRL+RGRK
Sbjct: 61 SRKPWGSINYHLQRLNRGRK 80

The following BLAST results are available for this feature:

BLAST of CmoCh05G010200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G010200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD09_CUCSA	1.3e-34	83.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361270 PE=4 SV=1	[more]
A0A061GXZ9_THECC	1.8e-33	83.75	Uncharacterized protein OS=Theobroma cacao GN=TCM_041863 PE=4 SV=1	[more]
A0A0D2QSZ8_GOSRA	3.4e-32	82.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G133500 PE=4 SV=1	[more]
M0ZI15_SOLTU	9.9e-32	78.75	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000442 PE=4 SV=1	[more]
A0A0V0GYJ3_SOLCH	9.9e-32	78.75	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CmoCh05G010200 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47278.2	1.1e-29	68.75	unknown protein	[more]

BLAST of CmoCh05G010200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129861\|ref\|XP_008464883.1\|	2.8e-35	86.25	PREDICTED: uncharacterized protein LOC103502643 [Cucumis melo]	[more]
gi\|449452947\|ref\|XP_004144220.1\|	1.8e-34	83.75	PREDICTED: uncharacterized protein LOC101212239 [Cucumis sativus]	[more]
gi\|700192361\|gb\|KGN47565.1\|	1.8e-34	83.75	hypothetical protein Csa_6G361270 [Cucumis sativus]	[more]
gi\|590589445\|ref\|XP_007016453.1\|	2.6e-33	83.75	Uncharacterized protein TCM_041863 [Theobroma cacao]	[more]
gi\|802553819\|ref\|XP_012065017.1\|	4.4e-33	80.00	PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010200.1	CmoCh05G010200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 20..59 score: 7.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 20..63 score: 7.9
None	No IPR available	PANTHER	PTHR28066	FAMILY NOT NAMED	coord: 1..80 score: 3.8
None	No IPR available	PANTHER	PTHR28066:SF1	37S RIBOSOMAL PROTEIN MRP10, MITOCHONDRIAL	coord: 1..80 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G010200	Cucsa.055870	Cucumber (Gy14) v1	cgycmoB0070
CmoCh05G010200	CmaCh05G010010	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G010200	Csa6G361270	Cucumber (Chinese Long) v2	cmocuB797
CmoCh05G010200	MELO3C026555	Melon (DHL92) v3.5.1	cmomeB717
CmoCh05G010200	ClCG08G009640	Watermelon (Charleston Gray)	cmowcgB714
CmoCh05G010200	CSPI06G18890	Wild cucumber (PI 183967)	cmocpiB801
CmoCh05G010200	Lsi08G008170	Bottle gourd (USVL1VR-Ls)	cmolsiB729
CmoCh05G010200	Cp4.1LG11g08140	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G010200	MELO3C026555.2	Melon (DHL92) v3.6.1	cmomedB814
CmoCh05G010200	CsaV3_6G031770	Cucumber (Chinese Long) v3	cmocucB0938
CmoCh05G010200	Cla97C08G152420	Watermelon (97103) v2	cmowmbB801
CmoCh05G010200	Bhi04G001212	Wax gourd	cmowgoB0949
CmoCh05G010200	CsGy6G018330	Cucumber (Gy14) v2	cgybcmoB826
CmoCh05G010200	Carg27034	Silver-seed gourd	carcmoB0265

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G010200	Watermelon (Charleston Gray)	cmowcgB715
CmoCh05G010200	Watermelon (97103) v1	cmowmB747