CmoCh05G009270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G009270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Cmo_Chr05 : 7251299 .. 7251608 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACAGCTCTCAAAGTCTGAGCTACCAAATTGGAGAAGCTAAAGGGCAAGCACAGGTTCACTTTGCCTCTATTTTTTAAAATGATTCATGACTCATAATCATACGACTAAATATAAGATTAAGGAGTAATGGGTAATGTATTTATGGATGTGACTATGTAGGAGAAGGCGAGTAATTTGATGGACAAGGCAAGTGATGCAGCCCAATCAACCAAGGAATCAATACAAGAGGCAGGACAACAGATGCAAGCCAAAGCGCAAGGTGCAGTTGATGCTGTCAAAGATGCCACTGACACGAAGAAATGA

mRNA sequence

ATGGCAGACAGCTCTCAAAGTCTGAGCTACCAAATTGGAGAAGCTAAAGGGCAAGCACAGGAGAAGGCGAGTAATTTGATGGACAAGGCAAGTGATGCAGCCCAATCAACCAAGGAATCAATACAAGAGGCAGGACAACAGATGCAAGCCAAAGCGCAAGGTGCAGTTGATGCTGTCAAAGATGCCACTGACACGAAGAAATGA

Coding sequence (CDS)

ATGGCAGACAGCTCTCAAAGTCTGAGCTACCAAATTGGAGAAGCTAAAGGGCAAGCACAGGAGAAGGCGAGTAATTTGATGGACAAGGCAAGTGATGCAGCCCAATCAACCAAGGAATCAATACAAGAGGCAGGACAACAGATGCAAGCCAAAGCGCAAGGTGCAGTTGATGCTGTCAAAGATGCCACTGACACGAAGAAATGA

Homology

[Close]

BLAST of CmoCh05G009270 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-18
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+SQ++SYQIGEAKGQAQEKASN+M+KASDAAQS KESIQE GQQM+AKAQGA DAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.8e-17
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+S+ +SY IGEAKGQAQEKASNLMDKA D AQS KES+QEAGQQM+AKAQGA DAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-15
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+SQ +SY  GEAKGQ QEK SN+MDKASDAAQS KES+QE GQQM AKAQGA DAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVK 60

Query: 61 DATD 65
          DA +
Sbjct: 61 DAVN 64

[Close]

BLAST of CmoCh05G009270 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-15
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MADSSQ +SYQ GEAKGQ +EKASNLMD A++AAQS KE+IQEAGQQ+ AKAQGA +A+K
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. TrEMBL
Match: A0A061EH65_THECC (Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019635 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-15
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+SQS+SY+ GEAKGQAQEKASNLMDKA+DAAQS KES+QE GQ+M  KA GA +AVK
Sbjct: 1  MADNSQSMSYKAGEAKGQAQEKASNLMDKAADAAQSAKESMQETGQKMMEKAHGAKEAVK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 8.3e-15
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          M+++SQS+S+  G+AKGQ QEKASNL+DKAS+AAQS KESIQE GQQ++ KAQGA + +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATDTKK 68
          + T   K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CmoCh05G009270 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-14
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          M+ +SQ++S+Q G+AKGQ QEKAS +MDKAS+AAQS KES++E GQQ++ KAQGA ++VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATDTKK 68
          +AT   K
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-12
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 3  DSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVKDA 62
          D+ Q+ SYQ G+A GQ +EKA  +MDKA DAA S ++S+Q+ GQQM+ KAQGA D VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TDTKK 68
          T   K
Sbjct: 62 TGMNK 66

[Close]

BLAST of CmoCh05G009270 vs. NCBI nr
Match: gi|449469355|ref|XP_004152386.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+SQ++SYQIGEAKGQAQEKASN+M+KASDAAQS KESIQE GQQM+AKAQGA DAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+SQ +SY +GEAKGQAQEKASN+MDKASD AQS KES+QEAGQQM+AKAQGA DAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MADSSQ +SYQ GEAKGQA+EKASNLMDKAS+AAQS KE+IQEAGQQM AKAQGA DA+K
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. NCBI nr
Match: gi|449469357|ref|XP_004152387.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 8.3e-17
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+S+ +SY IGEAKGQAQEKASNLMDKA D AQS KES+QEAGQQM+AKAQGA DAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh05G009270 vs. NCBI nr
Match: gi|659073371|ref|XP_008437024.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQSLSYQIGEAKGQAQEKASNLMDKASDAAQSTKESIQEAGQQMQAKAQGAVDAVK 60
          MAD+SQ +S+QIGEAKGQAQEKASNLMDKA DA QS KES+QEAGQQM+AKA+ A DAVK
Sbjct: 1  MADNSQKMSHQIGEAKGQAQEKASNLMDKAGDATQSAKESVQEAGQQMRAKAEDAADAVK 60

Query: 61 DATDTKK 68
          DAT   K
Sbjct: 61 DATGMNK 67

The following BLAST results are available for this feature:

BLAST of CmoCh05G009270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G009270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD4_CUCSA	4.0e-18	82.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	5.8e-17	79.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A0A0KXN2_CUCSA	1.9e-15	76.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]
A0A0A0KVV6_CUCSA	4.1e-15	73.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]
A0A061EH65_THECC	5.4e-15	74.63	Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019...	[more]

BLAST of CmoCh05G009270 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53820.1	8.3e-15	62.69	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	1.4e-14	61.19	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	3.8e-12	56.92	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of CmoCh05G009270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469355\|ref\|XP_004152386.1\|	5.7e-18	82.09	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	2.9e-17	79.10	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659119050\|ref\|XP_008459448.1\|	2.9e-17	80.60	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449469357\|ref\|XP_004152387.1\|	8.3e-17	79.10	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|659073371\|ref\|XP_008437024.1\|	3.2e-16	77.61	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G009270.1	CmoCh05G009270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..47 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..63 score: 3.8
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..63 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G009270	Melon (DHL92) v3.6.1	cmomedB802
CmoCh05G009270	Silver-seed gourd	carcmoB1425
CmoCh05G009270	Watermelon (97103) v2	cmowmbB804
CmoCh05G009270	Cucumber (Chinese Long) v3	cmocucB0935
CmoCh05G009270	Watermelon (97103) v2	cmowmbB803
CmoCh05G009270	Wax gourd	cmowgoB0922
CmoCh05G009270	Cucurbita moschata (Rifu)	cmocmoB155
CmoCh05G009270	Cucurbita moschata (Rifu)	cmocmoB157
CmoCh05G009270	Cucumber (Gy14) v1	cgycmoB0764
CmoCh05G009270	Cucurbita maxima (Rimu)	cmacmoB197
CmoCh05G009270	Cucurbita maxima (Rimu)	cmacmoB201
CmoCh05G009270	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G009270	Cucurbita maxima (Rimu)	cmacmoB788
CmoCh05G009270	Wild cucumber (PI 183967)	cmocpiB798
CmoCh05G009270	Cucumber (Chinese Long) v2	cmocuB794
CmoCh05G009270	Melon (DHL92) v3.5.1	cmomeB705
CmoCh05G009270	Watermelon (Charleston Gray)	cmowcgB686
CmoCh05G009270	Watermelon (Charleston Gray)	cmowcgB687
CmoCh05G009270	Watermelon (97103) v1	cmowmB743
CmoCh05G009270	Watermelon (97103) v1	cmowmB744
CmoCh05G009270	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G009270	Cucurbita pepo (Zucchini)	cmocpeB726
CmoCh05G009270	Cucurbita pepo (Zucchini)	cmocpeB753
CmoCh05G009270	Bottle gourd (USVL1VR-Ls)	cmolsiB711
CmoCh05G009270	Cucumber (Gy14) v2	cgybcmoB673