CmoCh05G009120 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G009120
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTIR-LRR-NBS disease resistance protein
LocationCmo_Chr05 : 7017954 .. 7018888 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCCATTGGTTGTGAATCATTGGTTAGAAGTCCCGACAACGTTTTGGATATAATATCAAGCAAGCAGGTTCATCTCTACTCATTTCATTTTTCTTTGTTCATATTGCACTTTTTTTCTCGTTAATATTTCAATGTATGTTAATTTTTATGTCATAGAACAATAGAGAGTTCATTCTAATGAATAGAGAAATCTCAGAATGGTTCAACTACCAAACTATATCAAAGTCAATAAAGGTTAGCTTCTGACATGATCACAATATAGCAAAAAAGTTAGCTACCTATGCTATGATCAAAGTGGATGGAGATTCATATCAAAGGGAAGCCTTAATTTCATGTAACATATTCATCGGACATAGACTCCAAAGTTCTTTTATGAGAAAATTCATCATCATCAACAACAAAATATACGTGGTTAGTAACAATTTCTTCTCCAACATTTAGTAATTCCGTAGTAGCGAACGATTGAAATGATGTTATAGTCTAGTTTGAAGTTGTGAAAGGTTAATGTAACTAAAAGAAGCTATGGTATCGATCTCGTCGATGAGGTCCATGGGATACAAAATGATGTTAGGGGTCAGGGGTAATGTATATAGATTTTGATGACTAAGAGGAATTGTCAAGCTGGTGAGTGAGCTATTGGTTTCTTGTGTTGTTTTGAGCCAACTATGTTTCTTTCCATTTATATTATTTTGTTATGTATGATGCTGATAATGGCATAGGGATGTTATCAAATCCTTCGCTCAAGAAGTCTCCGCAAGATCAGATTGCAAAACAATGTTGCATGTAGAGAACTTCCCAATTGAAATTGATTCCAAAATACAACAACTTACCAACTTTCCCTTACACGTAACATGTTATGGCATTACAATGATACGTGGCATGGAAGGCATGGCAGAGACACACTCGCCAAATCTATATTTGATAAACTAA

mRNA sequence

ATGGATGCCATTGGTTGTGAATCATTGGTTAGAAGTCCCGACAACGTTTTGGATATAATATCAAGCAAGCAGGTTAATGTAACTAAAAGAAGCTATGGTATCGATCTCGTCGATGAGGTCCATGGGATACAAAATGATGTTAGGGGTCAGGGGGATGTTATCAAATCCTTCGCTCAAGAAGTCTCCGCAAGATCAGATTGCAAAACAATGTTGCATGTAGAGAACTTCCCAATTGAAATTGATTCCAAAATACAACAACTTACCAACTTTCCCTTACACGTAACATGTTATGGCATTACAATGATACGTGGCATGGAAGGCATGGCAGAGACACACTCGCCAAATCTATATTTGATAAACTAA

Coding sequence (CDS)

ATGGATGCCATTGGTTGTGAATCATTGGTTAGAAGTCCCGACAACGTTTTGGATATAATATCAAGCAAGCAGGTTAATGTAACTAAAAGAAGCTATGGTATCGATCTCGTCGATGAGGTCCATGGGATACAAAATGATGTTAGGGGTCAGGGGGATGTTATCAAATCCTTCGCTCAAGAAGTCTCCGCAAGATCAGATTGCAAAACAATGTTGCATGTAGAGAACTTCCCAATTGAAATTGATTCCAAAATACAACAACTTACCAACTTTCCCTTACACGTAACATGTTATGGCATTACAATGATACGTGGCATGGAAGGCATGGCAGAGACACACTCGCCAAATCTATATTTGATAAACTAA
Homology
[Close]
BLAST of CmoCh05G009120 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-24
Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 18   DIISSKQVNVTKRSYGIDLVDEVHGIQNDVRGQG---------------DVIKSFAQEVS 77
            +++   +  VT +  G+ L +EVHGIQNDV+G G               DVIKSF QEVS
Sbjct: 1178 EVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSRDVIKSFGQEVS 1237

Query: 78   ARSDCKTMLHVENFPIEIDSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
            A+SDC  MLH ENFP+  DSK+QQ  NFPLHVT  G+T IRGMEGMAET   N
Sbjct: 1238 AKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAETTLAN 1290

[Close]
BLAST of CmoCh05G009120 vs. TrEMBL
Match: E5GB36_CUCME (TIR-LRR-NBS disease resistance protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 24   QVNVTKRSYGIDLVDEVHGIQNDVR----GQGD---------------VIKSFAQEVSAR 83
            +VN++ RSYG+ + +E +G Q DV+      GD               ++K    E+S  
Sbjct: 912  EVNLSIRSYGVHVTEEFNGTQTDVKWPVVNYGDFYQPEKLQNLDIEDILVKRLFDELSYL 971

Query: 84   SDCKTMLHVENF-PIEI-DSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
            S+CK +LH  ++ PI I DS IQ +  FPLHVT  G T+I GMEGM +T   N
Sbjct: 972  SNCKAVLHAGSYDPIVITDSNIQPMI-FPLHVTYSGYTVISGMEGMGKTALAN 1023

[Close]
BLAST of CmoCh05G009120 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 1 

Query: 24   QVNVTKRSYGIDLVDEVHGIQNDVRG-------------------QGDVIKSFAQEVSAR 83
            +VN T   YG+ + +E+H IQ DV+                    +  ++K F +E+S  
Sbjct: 1086 EVNATITRYGVHVTEELHAIQTDVKWPMVNYADFYQLEKLQSLDIEELLLKRFFEEMSCW 1145

Query: 84   SDCKTMLHVENFPIE--IDSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
            S+ + ML+  N+  E  IDS IQ +  FPLHVT  G T I GMEGM +T   N
Sbjct: 1146 SNSQAMLYAANYDPEAIIDSNIQPMI-FPLHVTYNGETFICGMEGMGDTTLAN 1197

[Close]
BLAST of CmoCh05G009120 vs. TrEMBL
Match: E7CHD3_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 1 

Query: 24  QVNVTKRSYGIDLVDEVHGIQNDVRG-------------------QGDVIKSFAQEVSAR 83
           +VN T   YG+ + +E+H IQ DV+                    +  ++K F +E+S  
Sbjct: 739 EVNATITRYGVHVTEELHAIQTDVKWPMVNYADFYQLEKLQSLDIEELLLKRFFEEMSCW 798

Query: 84  SDCKTMLHVENFPIE--IDSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
           S+ + ML+  N+  E  IDS IQ +  FPLHVT  G T I GMEGM +T   N
Sbjct: 799 SNSQAMLYAANYDPEAIIDSNIQPMI-FPLHVTYNGETFICGMEGMGDTTLAN 850

[Close]
BLAST of CmoCh05G009120 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 18   DIISSKQVNVTKRSYGIDLVDEVHGIQNDVRGQG---------------DVIKSFAQEVS 77
            +++   +  VT +  G+ L +EVHGIQNDV+G G               DVIKSF QEVS
Sbjct: 1178 EVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSRDVIKSFGQEVS 1237

Query: 78   ARSDCKTMLHVENFPIEIDSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
            A+SDC  MLH ENFP+  DSK+QQ  NFPLHVT  G+T IRGMEGMAET   N
Sbjct: 1238 AKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAETTLAN 1290

[Close]
BLAST of CmoCh05G009120 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 18   DIISSKQVNVTKRSYGIDLVDEVHGIQNDVRGQG---------------DVIKSFAQEVS 77
            +++   +  VT +  G+ L +EVHGIQNDV+G G               DVIKSF QEVS
Sbjct: 1178 EVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSRDVIKSFGQEVS 1237

Query: 78   ARSDCKTMLHVENFPIEIDSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
            A+SDC  MLH ENFP+  DSK+QQ  NFPLHVT  G+T IRGMEGMAET   N
Sbjct: 1238 AKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAETTLAN 1290

[Close]
BLAST of CmoCh05G009120 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 4.3e-24
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 1 

Query: 18   DIISSKQVNVTKRSYGIDLVDEVHGIQNDVRGQG---------------DVIKSFAQEVS 77
            +++   +V VT +  G+ L +EVHGIQNDV+G G               DV+KSFAQEVS
Sbjct: 1176 EVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSRDVVKSFAQEVS 1235

Query: 78   ARSDCKTMLHVENFPIEIDSKIQQLTNFPLHVTCYGITMIRGMEGMAET 112
            A+SDC  +LH ENFP+  DSK+Q+  NFPLHVT  G+T IRGMEGMAET
Sbjct: 1236 AKSDCNAILHAENFPVWNDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1284

[Close]
BLAST of CmoCh05G009120 vs. NCBI nr
Match: gi|659070333|ref|XP_008454602.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1 

Query: 24  QVNVTKRSYGIDLVDEVHGIQNDVRG-------------------QGDVIKSFAQEVSAR 83
           +V V+ R  G+ + +E+HGIQ DV+                    +  ++K F QE+S  
Sbjct: 738 EVKVSIRRCGVHVTEELHGIQTDVKWPVVNYADFYQVEKLQNLDIEDVLVKRFFQELSCL 797

Query: 84  SDCKTMLHVENFPIE--IDSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
           S+ + MLH  ++  E  +DS IQ +  FPLH+T  G T+IRGMEGM ET   N
Sbjct: 798 SNSQAMLHAASYDPEAVVDSNIQPMV-FPLHLTYNGDTVIRGMEGMGETTVAN 849

[Close]
BLAST of CmoCh05G009120 vs. NCBI nr
Match: gi|307135798|gb|ADN33677.1| (TIR-LRR-NBS disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-08
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 24   QVNVTKRSYGIDLVDEVHGIQNDVR----GQGD---------------VIKSFAQEVSAR 83
            +VN++ RSYG+ + +E +G Q DV+      GD               ++K    E+S  
Sbjct: 912  EVNLSIRSYGVHVTEEFNGTQTDVKWPVVNYGDFYQPEKLQNLDIEDILVKRLFDELSYL 971

Query: 84   SDCKTMLHVENF-PIEI-DSKIQQLTNFPLHVTCYGITMIRGMEGMAETHSPN 116
            S+CK +LH  ++ PI I DS IQ +  FPLHVT  G T+I GMEGM +T   N
Sbjct: 972  SNCKAVLHAGSYDPIVITDSNIQPMI-FPLHVTYSGYTVISGMEGMGKTALAN 1023

The following BLAST results are available for this feature:
BLAST of CmoCh05G009120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G009120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLK3_CUCSA1.3e-2453.98Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1[more]
E5GB36_CUCME3.0e-0838.94TIR-LRR-NBS disease resistance protein (Fragment) OS=Cucumis melo subsp. melo PE... [more]
A0A0A0LJM0_CUCSA3.3e-0736.28Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1[more]
E7CHD3_CUCSA3.3e-0736.28Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1[more]
BLAST of CmoCh05G009120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G009120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205747|gb|KGN60866.1|1.9e-2453.98hypothetical protein Csa_2G020890 [Cucumis sativus][more]
gi|778666709|ref|XP_011648797.1|1.9e-2453.98PREDICTED: TMV resistance protein N-like [Cucumis sativus][more]
gi|659070453|ref|XP_008455171.1|4.3e-2454.13PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo][more]
gi|659070333|ref|XP_008454602.1|1.1e-0837.17PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo][more]
gi|307135798|gb|ADN33677.1|4.3e-0838.94TIR-LRR-NBS disease resistance protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0043168 anion binding
molecular_function GO:0032550 purine ribonucleoside binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G009120.1CmoCh05G009120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G009120CmaCh05G009290Cucurbita maxima (Rimu)cmacmoB788
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G009120Watermelon (97103) v2cmowmbB803
CmoCh05G009120Cucurbita moschata (Rifu)cmocmoB157
CmoCh05G009120Cucurbita maxima (Rimu)cmacmoB197
CmoCh05G009120Cucurbita maxima (Rimu)cmacmoB201
CmoCh05G009120Cucurbita maxima (Rimu)cmacmoB787
CmoCh05G009120Wild cucumber (PI 183967)cmocpiB799
CmoCh05G009120Watermelon (Charleston Gray)cmowcgB686
CmoCh05G009120Watermelon (97103) v1cmowmB743
CmoCh05G009120Cucurbita pepo (Zucchini)cmocpeB726
CmoCh05G009120Cucurbita pepo (Zucchini)cmocpeB753