CmoCh05G008850 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTCTAGGAATAACCAATTCATGGGGGGTTGGAGTATCACCCTCCGTTTCTTTCAGTTTCTTAGTAAGAATGGGTGACGGTATTCTGCCTAAATAGTAGACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTGAATTCTGACACAAGGTACTTATTAGATCTAATAGAATTATTTTGCTGTATCCAGACTAATATCAATCCAACCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGCATCGAAACATAGAAATGTTGACTAATCTGACTAACATTGAACTTGGTAAAATGAAATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCTAAGATTACGCATTGAGTTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGTATAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGTATAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA
BLAST of CmoCh05G008850 vs. Swiss-Prot
Match: PSBB_AETCO (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium GN=psbB PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. Swiss-Prot
Match: PSBB_MORIN (Photosystem II CP47 reaction center protein OS=Morus indica GN=psbB PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. Swiss-Prot
Match: PSBB_NICSY (Photosystem II CP47 reaction center protein OS=Nicotiana sylvestris GN=psbB PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. Swiss-Prot
Match: PSBB_NASOF (Photosystem II CP47 reaction center protein OS=Nasturtium officinale GN=psbB PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. Swiss-Prot
Match: PSBB_SOYBN (Photosystem II CP47 reaction center protein OS=Glycine max GN=psbB PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. TrEMBL
Match: B9S1B8_RICCO (Photosystem II P680 chlorophyll A apoprotein, putative OS=Ricinus communis GN=RCOM_1655470 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 2.7e-11 Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh05G008850 vs. TrEMBL
Match: A9XVI4_9ROSI (Photosystem II CP47 reaction center protein (Fragment) OS=Helianthemum canum GN=psbB PE=3 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.0e-10 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. TrEMBL
Match: A0A078H874_BRANA (BnaC04g29390D protein OS=Brassica napus GN=BnaC04g29390D PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.0e-10 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. TrEMBL
Match: Q9GFA5_CABCA (Photosystem II CP47 reaction center protein (Fragment) OS=Cabomba caroliniana GN=psbB PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.4e-10 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. TrEMBL
Match: A0A0M3SU71_VISAL (Photosystem II CP47 reaction center protein OS=Viscum album GN=psbB PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.4e-10 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B) HSP 1 Score: 72.8 bits (177), Expect = 9.0e-14 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. NCBI nr
Match: gi|922465007|ref|XP_013633081.1| (PREDICTED: photosystem II CP47 reaction center protein-like [Brassica oleracea var. oleracea]) HSP 1 Score: 76.3 bits (186), Expect = 2.3e-11 Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1
BLAST of CmoCh05G008850 vs. NCBI nr
Match: gi|223541026|gb|EEF42583.1| (Photosystem II P680 chlorophyll A apoprotein, putative [Ricinus communis]) HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11 Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh05G008850 vs. NCBI nr
Match: gi|157689768|gb|ABV65494.1| (photosystem II CP47 chlorophyll apoprotein, partial (chloroplast) [Helianthemum canum]) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. NCBI nr
Match: gi|674899249|emb|CDY33712.1| (BnaC04g29390D [Brassica napus]) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh05G008850 vs. NCBI nr
Match: gi|11022994|gb|AAG26257.1| (photosystem II CP47 protein [Cabomba caroliniana]) HSP 1 Score: 73.2 bits (178), Expect = 2.0e-10 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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