CmoCh05G008730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G008730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Origin recognition complex subunit, putative
Location	Cmo_Chr05 : 5813224 .. 5813616 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTCCCGCCTTCCCCCCTTCGTTTATCTACAACCTTCTTCCTCCATTACTGTCCAATCCTTCTGCGCTTCCAAGAATCCTTCCTTTTCTTCAATTTCCTCCCTCATGGATCTCTCCAAGATTGCCAGGAAGCTCGATCTTTCCGACTCCGAAACCCTCACCCGGAAAGCTGGGGAATTTCGTCGCCTCTCCGATCTCCAGTTCAATTCTTCCGCTATTGGCGTTGTAAGCTTTCATCTGCATCTCTTTCAAGTCTTCTCTGATCGGCAATTGTTCAATTTTGTATTTAATCTATATCTCGTTCTTGGTCTTTTTTTGTTTTTAGGGTGAGGTTTGCAAGGCCATAATCTGTTTGGAAATCGCCGCTACGAGGTGTGGTTTCGATTGGTGA

mRNA sequence

TTTCTTCCCGCCTTCCCCCCTTCGTTTATCTACAACCTTCTTCCTCCATTACTGTCCAATCCTTCTGCGCTTCCAAGAATCCTTCCTTTTCTTCAATTTCCTCCCTCATGGATCTCTCCAAGATTGCCAGGAAGCTCGATCTTTCCGACTCCGAAACCCTCACCCGGAAAGCTGGGGAATTTCGTCGCCTCTCCGATCTCCAGTTCAATTCTTCCGCTATTGGCGTTGGTGAGGTTTGCAAGGCCATAATCTGTTTGGAAATCGCCGCTACGAGGTGTGGTTTCGATTGGTGA

Coding sequence (CDS)

ATGGATCTCTCCAAGATTGCCAGGAAGCTCGATCTTTCCGACTCCGAAACCCTCACCCGGAAAGCTGGGGAATTTCGTCGCCTCTCCGATCTCCAGTTCAATTCTTCCGCTATTGGCGTTGGTGAGGTTTGCAAGGCCATAATCTGTTTGGAAATCGCCGCTACGAGGTGTGGTTTCGATTGGTGA

Homology

[Close]

BLAST of CmoCh05G008730 vs. Swiss-Prot
Match: ORC6_ARATH (Origin of replication complex subunit 6 OS=Arabidopsis thaliana GN=ORC6 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-14
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S I RKL L +++ L RKA E RRL D QF+SS IGVGE+CKA+ICLEIAATR
Sbjct: 1  MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATR 56

[Close]

BLAST of CmoCh05G008730 vs. Swiss-Prot
Match: ORC6_ORYSJ (Origin of replication complex subunit 6 OS=Oryza sativa subsp. japonica GN=ORC6 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S IA +L LS S  + RKA E RRL D+ F+SS +G+GEVCKAIICLEIAA++
Sbjct: 1  MDMSSIASRLGLSGSRPVVRKAAELRRLCDVTFDSSVLGIGEVCKAIICLEIAASK 56

[Close]

BLAST of CmoCh05G008730 vs. Swiss-Prot
Match: ORC6_ORYSI (Origin of replication complex subunit 6 OS=Oryza sativa subsp. indica GN=OsI_26966 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.6e-12
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S IA +L LS S  +  KA E RRL D+ F+SS +G+GEVCKAIICLEIAA++
Sbjct: 1  MDMSSIASRLGLSGSRPVVGKAAELRRLCDVTFDSSVLGIGEVCKAIICLEIAASK 56

[Close]

BLAST of CmoCh05G008730 vs. TrEMBL
Match: A0A0A0LKW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108700 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCGF 60
          MD   +ARKLDL+DSE+L RKAGEFRRLSDL FNSS IGVGEVCKAIICLEIAATR GF
Sbjct: 1  MDFRNLARKLDLADSESLIRKAGEFRRLSDLHFNSSLIGVGEVCKAIICLEIAATRLGF 59

[Close]

BLAST of CmoCh05G008730 vs. TrEMBL
Match: M5XGT9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014584mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-15
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKLDLSDS+ + R+A E RRL D+QF+SS IGVGEVCKA+ICLEIAATR G
Sbjct: 1  MDLSDIARKLDLSDSKHVIRRAAELRRLCDIQFDSSIIGVGEVCKAVICLEIAATRSG 58

[Close]

BLAST of CmoCh05G008730 vs. TrEMBL
Match: A0A061EBG6_THECC (Origin recognition complex protein 6 isoform 2 OS=Theobroma cacao GN=TCM_011759 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKL LS+ + L RKA E RRL D+QF+SS IGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSDIARKLGLSEQKLLVRKAAELRRLCDVQFDSSIIGVGEVCKAIICLEIAATRFG 58

[Close]

BLAST of CmoCh05G008730 vs. TrEMBL
Match: A0A061EI55_THECC (Origin recognition complex subunit 6 isoform 3 OS=Theobroma cacao GN=TCM_011759 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKL LS+ + L RKA E RRL D+QF+SS IGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSDIARKLGLSEQKLLVRKAAELRRLCDVQFDSSIIGVGEVCKAIICLEIAATRFG 58

[Close]

BLAST of CmoCh05G008730 vs. TrEMBL
Match: A0A061EC52_THECC (Origin recognition complex protein 6 isoform 1 OS=Theobroma cacao GN=TCM_011759 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKL LS+ + L RKA E RRL D+QF+SS IGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSDIARKLGLSEQKLLVRKAAELRRLCDVQFDSSIIGVGEVCKAIICLEIAATRFG 58

[Close]

BLAST of CmoCh05G008730 vs. TAIR10
Match: AT1G26840.1 (AT1G26840.1 origin recognition complex protein 6)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S I RKL L +++ L RKA E RRL D QF+SS IGVGE+CKA+ICLEIAATR
Sbjct: 1  MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATR 56

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: gi|449442305|ref|XP_004138922.1| (PREDICTED: origin of replication complex subunit 6 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCGF 60
          MD   +ARKLDL+DSE+L RKAGEFRRLSDL FNSS IGVGEVCKAIICLEIAATR GF
Sbjct: 1  MDFRNLARKLDLADSESLIRKAGEFRRLSDLHFNSSLIGVGEVCKAIICLEIAATRLGF 59

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: gi|659082155|ref|XP_008441697.1| (PREDICTED: origin recognition complex subunit 6 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-16
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MD   IARKLDL+DSE+L RKAGE RRLSDL FNSS IG+GEVCKA+ICLEIAATR G
Sbjct: 1  MDFHNIARKLDLADSESLIRKAGELRRLSDLHFNSSLIGIGEVCKAVICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: gi|645229803|ref|XP_008221630.1| (PREDICTED: origin recognition complex subunit 6 [Prunus mume])

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-15
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKLDLSDS+ + R+A E RRL D+QF+SS IGVGEVCKA+ICLEIAATR G
Sbjct: 1  MDLSDIARKLDLSDSKHVIRRAAELRRLCDIQFDSSIIGVGEVCKAVICLEIAATRSG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: gi|694361199|ref|XP_009360345.1| (PREDICTED: origin recognition complex subunit 6 isoform X3 [Pyrus x bretschneideri])

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-15
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKLDLSDS+ + R+A E RRL D+QF+SS IGVGEVCKA+ICLEIAATR G
Sbjct: 1  MDLSDIARKLDLSDSKHVIRRAAELRRLCDIQFDSSIIGVGEVCKAVICLEIAATRSG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: gi|596218128|ref|XP_007223965.1| (hypothetical protein PRUPE_ppa014584mg [Prunus persica])

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-15
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKLDLSDS+ + R+A E RRL D+QF+SS IGVGEVCKA+ICLEIAATR G
Sbjct: 1  MDLSDIARKLDLSDSKHVIRRAAELRRLCDIQFDSSIIGVGEVCKAVICLEIAATRSG 58

The following BLAST results are available for this feature:

BLAST of CmoCh05G008730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ORC6_ARATH	3.5e-14	67.86	Origin of replication complex subunit 6 OS=Arabidopsis thaliana GN=ORC6 PE=1 SV=...	[more]
ORC6_ORYSJ	1.5e-12	62.50	Origin of replication complex subunit 6 OS=Oryza sativa subsp. japonica GN=ORC6 ...	[more]
ORC6_ORYSI	9.6e-12	60.71	Origin of replication complex subunit 6 OS=Oryza sativa subsp. indica GN=OsI_269...	[more]

BLAST of CmoCh05G008730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKW3_CUCSA	3.6e-18	83.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108700 PE=4 SV=1	[more]
M5XGT9_PRUPE	4.9e-15	75.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014584mg PE=4 SV=1	[more]
A0A061EBG6_THECC	4.2e-14	75.86	Origin recognition complex protein 6 isoform 2 OS=Theobroma cacao GN=TCM_011759 ...	[more]
A0A061EI55_THECC	4.2e-14	75.86	Origin recognition complex subunit 6 isoform 3 OS=Theobroma cacao GN=TCM_011759 ...	[more]
A0A061EC52_THECC	4.2e-14	75.86	Origin recognition complex protein 6 isoform 1 OS=Theobroma cacao GN=TCM_011759 ...	[more]

BLAST of CmoCh05G008730 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26840.1	2.0e-15	67.86	origin recognition complex protein 6	[more]

BLAST of CmoCh05G008730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442305\|ref\|XP_004138922.1\|	5.2e-18	83.05	PREDICTED: origin of replication complex subunit 6 [Cucumis sativus]	[more]
gi\|659082155\|ref\|XP_008441697.1\|	1.7e-16	79.31	PREDICTED: origin recognition complex subunit 6 [Cucumis melo]	[more]
gi\|645229803\|ref\|XP_008221630.1\|	7.1e-15	75.86	PREDICTED: origin recognition complex subunit 6 [Prunus mume]	[more]
gi\|694361199\|ref\|XP_009360345.1\|	7.1e-15	75.86	PREDICTED: origin recognition complex subunit 6 isoform X3 [Pyrus x bretschneide...	[more]
gi\|596218128\|ref\|XP_007223965.1\|	7.1e-15	75.86	hypothetical protein PRUPE_ppa014584mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008721	ORC6
IPR020529	ORC6_met/pln

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005664	nuclear origin of replication recognition complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005664	nuclear origin of replication recognition complex
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008730.1	CmoCh05G008730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008721	Origin recognition complex, subunit 6	PFAM	PF05460	ORC6	coord: 3..56 score: 6.
IPR020529	Origin recognition complex, subunit 6, metazoa/plant	PRODOM	PD315657		coord: 6..59 score: 5.0
None	No IPR available	PANTHER	PTHR13394	ORIGIN RECOGNITION COMPLEX SUBUNIT 6	coord: 1..56 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G008730	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G008730	Wax gourd	cmowgoB0930
CmoCh05G008730	Cucumber (Gy14) v1	cgycmoB0734
CmoCh05G008730	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G008730	Cucurbita maxima (Rimu)	cmacmoB789
CmoCh05G008730	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G008730	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G008730	Melon (DHL92) v3.5.1	cmomeB726
CmoCh05G008730	Watermelon (97103) v1	cmowmB762
CmoCh05G008730	Cucurbita pepo (Zucchini)	cmocpeB725
CmoCh05G008730	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G008730	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G008730	Melon (DHL92) v3.6.1	cmomedB823