CmoCh05G008310 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G008310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCmo_Chr05 : 5061821 .. 5062650 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGGTGAAGCAAGTTGGAGTTGAGGTTGAGGTTGAGTTGCTGAAAGATTCACCTAGTGATGTTCTTGCCTAATTCTTGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA

mRNA sequence

ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA

Coding sequence (CDS)

ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA
Homology
[Close]
BLAST of CmoCh05G008310 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 

Query: 203  RLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS 251
            +LQKCVALS+ EAEY+A  E GKEMIW+  +L+ELG  Q+E ++  DS
Sbjct: 1210 KLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDS 1257

[Close]
BLAST of CmoCh05G008310 vs. TrEMBL
Match: A5B7B1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030993 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.1e-15
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      N + VA++++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 154 VLARGKKTDTLYMTSCPRNTIAVADASTDTSLWHRRLGHMSDKGMKMLLSKGKLPELKSI 213

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT+R  K +
Sbjct: 214 DFDMCESCILGKQKKVSFLKTSRTPKAE 241

[Close]
BLAST of CmoCh05G008310 vs. TrEMBL
Match: A5ADX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009113 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      + + VA++++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 318 VLARGKKTGTLYMTSCSRDTIAVADASTDTSLWHRRLGHMSEKGMKMLQSKGKLPELKSI 377

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT+R  K +
Sbjct: 378 DFDMCESCILGKQKKVSFLKTSRTPKXE 405

[Close]
BLAST of CmoCh05G008310 vs. TrEMBL
Match: K4CEK1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 201 MFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS 251
           M+RLQKCV+LSS EAEYVAIAEDGKEMIW+ DYLEELGKKQ EKIL +DS
Sbjct: 1   MYRLQKCVSLSSTEAEYVAIAEDGKEMIWLEDYLEELGKKQSEKILYLDS 50

[Close]
BLAST of CmoCh05G008310 vs. TrEMBL
Match: A5B0V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008497 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.4e-14
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      N + VA+ ++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 346 VLARGKKTGTLYMTSCPRNTIAVADVSTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSI 405

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT R  K +
Sbjct: 406 DFDMCESCILGKQKKVSFLKTGRTPKAE 433

[Close]
BLAST of CmoCh05G008310 vs. TrEMBL
Match: A5B6M5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035792 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.4e-14
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      + + VA++++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 383 VLARGKKTGTLYMTSCSRDTIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSI 442

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT R  K +
Sbjct: 443 DFDMCESCILGKQKKVSFLKTGRTPKAE 470

[Close]
BLAST of CmoCh05G008310 vs. NCBI nr
Match: gi|147795390|emb|CAN67605.1| (hypothetical protein VITISV_030993 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      N + VA++++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 154 VLARGKKTDTLYMTSCPRNTIAVADASTDTSLWHRRLGHMSDKGMKMLLSKGKLPELKSI 213

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT+R  K +
Sbjct: 214 DFDMCESCILGKQKKVSFLKTSRTPKAE 241

[Close]
BLAST of CmoCh05G008310 vs. NCBI nr
Match: gi|147794075|emb|CAN71161.1| (hypothetical protein VITISV_009113 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      + + VA++++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 318 VLARGKKTGTLYMTSCSRDTIAVADASTDTSLWHRRLGHMSEKGMKMLQSKGKLPELKSI 377

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT+R  K +
Sbjct: 378 DFDMCESCILGKQKKVSFLKTSRTPKXE 405

[Close]
BLAST of CmoCh05G008310 vs. NCBI nr
Match: gi|147778396|emb|CAN76274.1| (hypothetical protein VITISV_008497 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-14
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      N + VA+ ++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 346 VLARGKKTGTLYMTSCPRNTIAVADVSTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSI 405

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT R  K +
Sbjct: 406 DFDMCESCILGKQKKVSFLKTGRTPKAE 433

[Close]
BLAST of CmoCh05G008310 vs. NCBI nr
Match: gi|147782026|emb|CAN63196.1| (hypothetical protein VITISV_035792 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-14
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1 

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+ARG K+ TLY      + + VA++++++S+WH RLGHMS KGMKML + G L  LKS+
Sbjct: 383 VLARGKKTGTLYMTSCSRDTIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSI 442

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKD 90
           D    E+C++ KQK+VSF KT R  K +
Sbjct: 443 DFDMCESCILGKQKKVSFLKTGRTPKAE 470

[Close]
BLAST of CmoCh05G008310 vs. NCBI nr
Match: gi|1012347873|gb|KYP59064.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 86.7 bits (213), Expect = 6.5e-14
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 1 

Query: 1   MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKS 60
           M +ARG KS TLY AGG    +  A + S + +WHNRLGHMS KGM +L + G L  LKS
Sbjct: 369 MTLARGLKSGTLYMAGGSNPNIPFAGAVSQADLWHNRLGHMSEKGMSVLKSIGRLPELKS 428

Query: 61  VDMSSYENCVMSKQKRVSFTKTTRELK 88
           VD+   E+CV+ KQKRVSF  T R  K
Sbjct: 429 VDVGLCEHCVLGKQKRVSFMTTGRTPK 455

The following BLAST results are available for this feature:
BLAST of CmoCh05G008310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC1.1e-0858.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CmoCh05G008310 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B7B1_VITVI9.1e-1550.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030993 PE=4 SV=1[more]
A5ADX1_VITVI1.5e-1448.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009113 PE=4 SV=1[more]
K4CEK1_SOLLC2.0e-1484.00Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A5B0V5_VITVI3.4e-1450.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008497 PE=4 SV=1[more]
A5B6M5_VITVI3.4e-1448.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035792 PE=4 SV=1[more]
BLAST of CmoCh05G008310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G008310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147795390|emb|CAN67605.1|1.3e-1450.00hypothetical protein VITISV_030993 [Vitis vinifera][more]
gi|147794075|emb|CAN71161.1|2.2e-1448.86hypothetical protein VITISV_009113 [Vitis vinifera][more]
gi|147778396|emb|CAN76274.1|4.9e-1450.00hypothetical protein VITISV_008497 [Vitis vinifera][more]
gi|147782026|emb|CAN63196.1|4.9e-1448.86hypothetical protein VITISV_035792 [Vitis vinifera][more]
gi|1012347873|gb|KYP59064.1|6.5e-1454.02Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G008310.1CmoCh05G008310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 21..74
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G008310Cucumber (Chinese Long) v3cmocucB0920
CmoCh05G008310Cucumber (Chinese Long) v3cmocucB0926
CmoCh05G008310Watermelon (97103) v2cmowmbB784
CmoCh05G008310Wax gourdcmowgoB0926
CmoCh05G008310Cucurbita moschata (Rifu)cmocmoB149
CmoCh05G008310Cucumber (Gy14) v1cgycmoB0510
CmoCh05G008310Cucumber (Gy14) v1cgycmoB0768
CmoCh05G008310Cucurbita maxima (Rimu)cmacmoB191
CmoCh05G008310Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G008310Wild cucumber (PI 183967)cmocpiB784
CmoCh05G008310Wild cucumber (PI 183967)cmocpiB790
CmoCh05G008310Cucumber (Chinese Long) v2cmocuB779
CmoCh05G008310Cucumber (Chinese Long) v2cmocuB787
CmoCh05G008310Melon (DHL92) v3.5.1cmomeB725
CmoCh05G008310Melon (DHL92) v3.5.1cmomeB726
CmoCh05G008310Watermelon (Charleston Gray)cmowcgB692
CmoCh05G008310Watermelon (Charleston Gray)cmowcgB696
CmoCh05G008310Watermelon (97103) v1cmowmB760
CmoCh05G008310Cucurbita pepo (Zucchini)cmocpeB743
CmoCh05G008310Bottle gourd (USVL1VR-Ls)cmolsiB703
CmoCh05G008310Cucumber (Gy14) v2cgybcmoB240
CmoCh05G008310Cucumber (Gy14) v2cgybcmoB246
CmoCh05G008310Melon (DHL92) v3.6.1cmomedB822
CmoCh05G008310Melon (DHL92) v3.6.1cmomedB823
CmoCh05G008310Silver-seed gourdcarcmoB0538
CmoCh05G008310Silver-seed gourdcarcmoB0653