CmoCh05G008190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G008190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ycf2 protein
Location	Cmo_Chr05 : 4912660 .. 4913625 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAA

mRNA sequence

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAA

Coding sequence (CDS)

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAA

Homology

[Close]

BLAST of CmoCh05G008190 vs. Swiss-Prot
Match: YCF2_MORIN (Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 76/93 (81.72%), Postives = 79/93 (84.95%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR A H+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1843 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1902

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1903 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1928

[Close]

BLAST of CmoCh05G008190 vs. Swiss-Prot
Match: YCF2_SOYBN (Protein Ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-33
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI+QKKSIIDTNIIR  LH+QTWD RSQVR VQDHGIL Y I
Sbjct: 1840 MGSNVRDLVALTNEALSISIIQKKSIIDTNIIRSVLHRQTWDFRSQVRSVQDHGILFYQI 1899

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKSWD 96
            GRA       V+QN+LLSNCSIDPISIYMKKKS D
Sbjct: 1900 GRA-------VSQNVLLSNCSIDPISIYMKKKSCD 1927

[Close]

BLAST of CmoCh05G008190 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-33
Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI Q+KSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1546 MGSNVRDLVALTNEALSISITQRKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1605

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       +AQN+LLSNCSIDPISIYMKKKS
Sbjct: 1606 GRA-------LAQNVLLSNCSIDPISIYMKKKS 1631

[Close]

BLAST of CmoCh05G008190 vs. Swiss-Prot
Match: YCF2_LOTJA (Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-33
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            +GSNV+DLVALTNE +SISI+QKKSIIDTN+IR ALHKQTWDLRSQVR VQDHGIL Y I
Sbjct: 1851 LGSNVQDLVALTNEALSISIIQKKSIIDTNLIRSALHKQTWDLRSQVRSVQDHGILFYQI 1910

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       V+QN+LLSNCSIDPISIYMKKKS
Sbjct: 1911 GRA-------VSQNVLLSNCSIDPISIYMKKKS 1936

[Close]

BLAST of CmoCh05G008190 vs. Swiss-Prot
Match: YCF2_POPAL (Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-33
Identity = 75/93 (80.65%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1899

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+ LSNC IDPISIYMKKKS
Sbjct: 1900 GRA-------VAQNVFLSNCPIDPISIYMKKKS 1925

[Close]

BLAST of CmoCh05G008190 vs. TrEMBL
Match: G0YDS4_9ROSA (Protein Ycf2 OS=Ficus sp. M. J. Moore 315 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1845 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1904

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1905 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1930

[Close]

BLAST of CmoCh05G008190 vs. TrEMBL
Match: Q0PUW9_PRUPE (Protein Ycf2 OS=Prunus persica GN=ycf2 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1837 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1896

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1897 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1922

[Close]

BLAST of CmoCh05G008190 vs. TrEMBL
Match: V6BPX5_9ROSA (Protein Ycf2 OS=Pyrus spinosa GN=ycf2 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1842 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1901

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1902 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1927

[Close]

BLAST of CmoCh05G008190 vs. TrEMBL
Match: A0A0N9YQB9_9ROSA (Protein Ycf2 OS=Ficus racemosa GN=ycf2 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1844 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1903

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1904 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1929

[Close]

BLAST of CmoCh05G008190 vs. TrEMBL
Match: A0A0F6Q2Q4_9ROSA (Protein Ycf2 OS=Prunus subhirtella var. subhirtella GN=ycf2 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1837 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1896

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1897 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1922

[Close]

BLAST of CmoCh05G008190 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 136.7 bits (343), Expect = 8.4e-33
Identity = 72/93 (77.42%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+L+SNC IDPISIYMKKKS
Sbjct: 1912 GRA-------VAQNVLISNCPIDPISIYMKKKS 1937

[Close]

BLAST of CmoCh05G008190 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 136.7 bits (343), Expect = 8.4e-33
Identity = 72/93 (77.42%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+L+SNC IDPISIYMKKKS
Sbjct: 1912 GRA-------VAQNVLISNCPIDPISIYMKKKS 1937

[Close]

BLAST of CmoCh05G008190 vs. NCBI nr
Match: gi|146261284|gb|ABQ14899.1| (Ycf2 [Peridiscus lucidus])

HSP 1 Score: 144.8 bits (364), Expect = 8.8e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1846 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1905

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1906 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1931

[Close]

BLAST of CmoCh05G008190 vs. NCBI nr
Match: gi|511265901|gb|AGN72008.1| (hypothetical chloroplast RF2 [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 144.8 bits (364), Expect = 8.8e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1838 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1897

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1898 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1923

[Close]

BLAST of CmoCh05G008190 vs. NCBI nr
Match: gi|313183865|ref|YP_004021708.1| (hypothetical chloroplast RF2 [Prunus persica])

HSP 1 Score: 144.8 bits (364), Expect = 8.8e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1837 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1896

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1897 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1922

[Close]

BLAST of CmoCh05G008190 vs. NCBI nr
Match: gi|511943716|ref|YP_008082776.1| (hypothetical chloroplast RF21 [Prinsepia utilis])

HSP 1 Score: 144.8 bits (364), Expect = 8.8e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1839 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1898

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1899 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1924

[Close]

BLAST of CmoCh05G008190 vs. NCBI nr
Match: gi|944542126|ref|YP_009176046.1| (hypothetical chloroplast RF21 (chloroplast) [Ficus racemosa])

HSP 1 Score: 144.8 bits (364), Expect = 8.8e-32
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1844 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1903

Query: 61   GRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS 94
            GRA       VAQN+LLSNCSIDPISIYMKKKS
Sbjct: 1904 GRA-------VAQNVLLSNCSIDPISIYMKKKS 1929

The following BLAST results are available for this feature:

BLAST of CmoCh05G008190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_MORIN	1.6e-33	81.72	Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1	[more]
YCF2_SOYBN	2.1e-33	78.95	Protein Ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1	[more]
YCF2_CUCSA	2.7e-33	80.65	Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1	[more]
YCF2_LOTJA	3.6e-33	79.57	Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1	[more]
YCF2_POPAL	6.1e-33	80.65	Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmoCh05G008190 vs. TrEMBL


Match Name	E-value	Identity	Description
G0YDS4_9ROSA	6.1e-32	82.80	Protein Ycf2 OS=Ficus sp. M. J. Moore 315 GN=ycf2 PE=3 SV=1	[more]
Q0PUW9_PRUPE	6.1e-32	82.80	Protein Ycf2 OS=Prunus persica GN=ycf2 PE=3 SV=1	[more]
V6BPX5_9ROSA	6.1e-32	82.80	Protein Ycf2 OS=Pyrus spinosa GN=ycf2 PE=3 SV=1	[more]
A0A0N9YQB9_9ROSA	6.1e-32	82.80	Protein Ycf2 OS=Ficus racemosa GN=ycf2 PE=3 SV=1	[more]
A0A0F6Q2Q4_9ROSA	6.1e-32	82.80	Protein Ycf2 OS=Prunus subhirtella var. subhirtella GN=ycf2 PE=3 SV=1	[more]

BLAST of CmoCh05G008190 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	8.4e-33	77.42	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	8.4e-33	77.42	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of CmoCh05G008190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|146261284\|gb\|ABQ14899.1\|	8.8e-32	82.80	Ycf2 [Peridiscus lucidus]	[more]
gi\|511265901\|gb\|AGN72008.1\|	8.8e-32	82.80	hypothetical chloroplast RF2 [Dasiphora fruticosa subsp. floribunda]	[more]
gi\|313183865\|ref\|YP_004021708.1\|	8.8e-32	82.80	hypothetical chloroplast RF2 [Prunus persica]	[more]
gi\|511943716\|ref\|YP_008082776.1\|	8.8e-32	82.80	hypothetical chloroplast RF21 [Prinsepia utilis]	[more]
gi\|944542126\|ref\|YP_009176046.1\|	8.8e-32	82.80	hypothetical chloroplast RF21 (chloroplast) [Ficus racemosa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008190.1	CmoCh05G008190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 1..95 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G008190	Cucurbita moschata (Rifu)	cmocmoB149
CmoCh05G008190	Cucumber (Gy14) v1	cgycmoB0510
CmoCh05G008190	Cucurbita maxima (Rimu)	cmacmoB191
CmoCh05G008190	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G008190	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G008190	Wild cucumber (PI 183967)	cmocpiB790
CmoCh05G008190	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G008190	Cucumber (Chinese Long) v2	cmocuB787
CmoCh05G008190	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G008190	Melon (DHL92) v3.5.1	cmomeB726
CmoCh05G008190	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G008190	Watermelon (97103) v1	cmowmB760
CmoCh05G008190	Cucurbita pepo (Zucchini)	cmocpeB743
CmoCh05G008190	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G008190	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G008190	Cucumber (Gy14) v2	cgybcmoB246
CmoCh05G008190	Melon (DHL92) v3.6.1	cmomedB822
CmoCh05G008190	Melon (DHL92) v3.6.1	cmomedB823
CmoCh05G008190	Silver-seed gourd	carcmoB0653
CmoCh05G008190	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G008190	Cucumber (Chinese Long) v3	cmocucB0926
CmoCh05G008190	Watermelon (97103) v2	cmowmbB784