CmoCh05G008180 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAAGGGGTTCTTATTTGTGCTGATTTTGAGAAGAATGGCAAATCTGTAATTATCCATAACTTTAAGGGTATTTTGGTAATTTACCACTTTCTAAATATTAATCTTTTCCTTCTTGAGAAAAATTAGTTCTAGATAAGGAATTAACAATTCGGAAAGAAACATGATAATTAGAAAAATGACATTTTTGTCCTTTTCACTTGCTTTTTTCCTTTCCAATCATTTTCCAAAGGCCTTCCTTCAAATTTTGAAGGTATAGAAATGACTTGGTCAAGATCCTTGTTACTCCTCTTAATTTCTTTGGTTGAGTCTTACATGTGTGGCTTATTCTCATTGGAGCTAATTTCCTTTATTGTTAAGGTATTATTGTTACTATAATAATACACTCAAATTTATCATATACTTTAGATCATTTAAGTTATTTCTTGAATATGATCTTACTATATATGGTTCGACATTGCACTAATAACCTTAAATCTTTCGAATAATATTAATGGATAATGATTTATTACAAATAAAATAAACCCTTTTGACTTCCAAATGCCACAATTCAATAGCTTGGAACGGACCAAATGGGCCAACACAAACAAATGGAGTGGAGGTTTTCAAAATCTAGCATCCCCACGTGATGTGTTCTTGGTGGAGCTTTACGTGAATGTAGCATCATTGAATAAGGATTCTCACACAAGTTGCATTTGGTGTTAACTTGCATTTCCAAAAGAGGGAGGTCGAAAATGCATCGTCAAGTATTGTACGTTTGACGTTATGGGTAATCGTCAACAAAAGTGA ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAAGGGAGGTCGAAAATGCATCGTCAAGTATTGTACGTTTGACGTTATGGGTAATCGTCAACAAAAGTGA ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAAGGGAGGTCGAAAATGCATCGTCAAGTATTGTACGTTTGACGTTATGGGTAATCGTCAACAAAAGTGA
BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_POPAL (Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24 Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1
BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_MORIN (Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24 Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1
BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_POPTR (Protein Ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24 Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1
BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23 Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_LOTJA (Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23 Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1
BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0F6PYU0_9ROSA (Protein Ycf2 OS=Prunus maximowiczii GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0F6PY33_PRUYE (Protein Ycf2 OS=Prunus yedoensis GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. TrEMBL
Match: G0YD94_9ROSA (Protein Ycf2 OS=Spiraea tomentosa GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0C5APZ4_CANSA (Protein Ycf2 OS=Cannabis sativa GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0F6PZZ1_9ROSA (Protein Ycf2 OS=Prunus padus GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core) HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23 Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of CmoCh05G008180 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core) HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23 Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|146261284|gb|ABQ14899.1| (Ycf2 [Peridiscus lucidus]) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|511265901|gb|AGN72008.1| (hypothetical chloroplast RF2 [Dasiphora fruticosa subsp. floribunda]) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|408903720|gb|AFU96451.1| (Ycf2, partial (chloroplast) [Elaeodendron orientale]) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|317046216|ref|YP_004072505.1| (Ycf2 protein [Corynocarpus laevigata]) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|511943716|ref|YP_008082776.1| (hypothetical chloroplast RF21 [Prinsepia utilis]) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22 Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |