CmoCh05G008180 (gene) Cucurbita moschata (Rifu)

NameCmoCh05G008180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProtein Ycf2
LocationCmo_Chr05 : 4911586 .. 4912657 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAAGGGGTTCTTATTTGTGCTGATTTTGAGAAGAATGGCAAATCTGTAATTATCCATAACTTTAAGGGTATTTTGGTAATTTACCACTTTCTAAATATTAATCTTTTCCTTCTTGAGAAAAATTAGTTCTAGATAAGGAATTAACAATTCGGAAAGAAACATGATAATTAGAAAAATGACATTTTTGTCCTTTTCACTTGCTTTTTTCCTTTCCAATCATTTTCCAAAGGCCTTCCTTCAAATTTTGAAGGTATAGAAATGACTTGGTCAAGATCCTTGTTACTCCTCTTAATTTCTTTGGTTGAGTCTTACATGTGTGGCTTATTCTCATTGGAGCTAATTTCCTTTATTGTTAAGGTATTATTGTTACTATAATAATACACTCAAATTTATCATATACTTTAGATCATTTAAGTTATTTCTTGAATATGATCTTACTATATATGGTTCGACATTGCACTAATAACCTTAAATCTTTCGAATAATATTAATGGATAATGATTTATTACAAATAAAATAAACCCTTTTGACTTCCAAATGCCACAATTCAATAGCTTGGAACGGACCAAATGGGCCAACACAAACAAATGGAGTGGAGGTTTTCAAAATCTAGCATCCCCACGTGATGTGTTCTTGGTGGAGCTTTACGTGAATGTAGCATCATTGAATAAGGATTCTCACACAAGTTGCATTTGGTGTTAACTTGCATTTCCAAAAGAGGGAGGTCGAAAATGCATCGTCAAGTATTGTACGTTTGACGTTATGGGTAATCGTCAACAAAAGTGA

mRNA sequence

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAAGGGAGGTCGAAAATGCATCGTCAAGTATTGTACGTTTGACGTTATGGGTAATCGTCAACAAAAGTGA

Coding sequence (CDS)

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAAATATACTTCTAAAGGGAGGTCGAAAATGCATCGTCAAGTATTGTACGTTTGACGTTATGGGTAATCGTCAACAAAAGTGA
BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_POPAL (Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1899

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+ L
Sbjct: 1900 GRA-------VAQNVFL 1909

BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_MORIN (Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR A H+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1843 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1902

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1903 GRA-------VAQNVLL 1912

BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_POPTR (Protein Ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1843 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1902

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+ L
Sbjct: 1903 GRA-------VAQNVFL 1912

BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI Q+KSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1546 MGSNVRDLVALTNEALSISITQRKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1605

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       +AQN+LL
Sbjct: 1606 GRA-------LAQNVLL 1615

BLAST of CmoCh05G008180 vs. Swiss-Prot
Match: YCF2_LOTJA (Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            +GSNV+DLVALTNE +SISI+QKKSIIDTN+IR ALHKQTWDLRSQVR VQDHGIL Y I
Sbjct: 1851 LGSNVQDLVALTNEALSISIIQKKSIIDTNLIRSALHKQTWDLRSQVRSVQDHGILFYQI 1910

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       V+QN+LL
Sbjct: 1911 GRA-------VSQNVLL 1920

BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0F6PYU0_9ROSA (Protein Ycf2 OS=Prunus maximowiczii GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1837 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1896

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1897 GRA-------VAQNVLL 1906

BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0F6PY33_PRUYE (Protein Ycf2 OS=Prunus yedoensis GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1837 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1896

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1897 GRA-------VAQNVLL 1906

BLAST of CmoCh05G008180 vs. TrEMBL
Match: G0YD94_9ROSA (Protein Ycf2 OS=Spiraea tomentosa GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1827 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1886

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1887 GRA-------VAQNVLL 1896

BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0C5APZ4_CANSA (Protein Ycf2 OS=Cannabis sativa GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1851 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1910

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1911 GRA-------VAQNVLL 1920

BLAST of CmoCh05G008180 vs. TrEMBL
Match: A0A0F6PZZ1_9ROSA (Protein Ycf2 OS=Prunus padus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1899

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1900 GRA-------VAQNVLL 1909

BLAST of CmoCh05G008180 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+L+
Sbjct: 1912 GRA-------VAQNVLI 1921

BLAST of CmoCh05G008180 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+L+
Sbjct: 1912 GRA-------VAQNVLI 1921

BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|146261284|gb|ABQ14899.1| (Ycf2 [Peridiscus lucidus])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1846 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1905

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1906 GRA-------VAQNVLL 1915

BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|511265901|gb|AGN72008.1| (hypothetical chloroplast RF2 [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1838 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1897

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1898 GRA-------VAQNVLL 1907

BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|408903720|gb|AFU96451.1| (Ycf2, partial (chloroplast) [Elaeodendron orientale])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 2018 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 2077

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 2078 GRA-------VAQNVLL 2087

BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|317046216|ref|YP_004072505.1| (Ycf2 protein [Corynocarpus laevigata])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1869 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1928

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1929 GRA-------VAQNVLL 1938

BLAST of CmoCh05G008180 vs. NCBI nr
Match: gi|511943716|ref|YP_008082776.1| (hypothetical chloroplast RF21 [Prinsepia utilis])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 1    MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHI 60
            MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y I
Sbjct: 1839 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1898

Query: 61   GRAVYHIGMVVAQNILL 78
            GRA       VAQN+LL
Sbjct: 1899 GRA-------VAQNVLL 1908

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YCF2_POPAL7.9e-2477.92Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1[more]
YCF2_MORIN7.9e-2477.92Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1[more]
YCF2_POPTR7.9e-2477.92Protein Ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1[more]
YCF2_CUCSA1.4e-2376.62Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1[more]
YCF2_LOTJA1.8e-2375.32Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0F6PYU0_9ROSA3.0e-2279.22Protein Ycf2 OS=Prunus maximowiczii GN=ycf2 PE=3 SV=1[more]
A0A0F6PY33_PRUYE3.0e-2279.22Protein Ycf2 OS=Prunus yedoensis GN=ycf2 PE=3 SV=1[more]
G0YD94_9ROSA3.0e-2279.22Protein Ycf2 OS=Spiraea tomentosa GN=ycf2 PE=3 SV=1[more]
A0A0C5APZ4_CANSA3.0e-2279.22Protein Ycf2 OS=Cannabis sativa GN=ycf2 PE=3 SV=1[more]
A0A0F6PZZ1_9ROSA3.0e-2279.22Protein Ycf2 OS=Prunus padus GN=ycf2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00860.11.1e-2374.03ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
ATCG01280.11.1e-2374.03ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
Match NameE-valueIdentityDescription
gi|146261284|gb|ABQ14899.1|4.4e-2279.22Ycf2 [Peridiscus lucidus][more]
gi|511265901|gb|AGN72008.1|4.4e-2279.22hypothetical chloroplast RF2 [Dasiphora fruticosa subsp. floribunda][more]
gi|408903720|gb|AFU96451.1|4.4e-2279.22Ycf2, partial (chloroplast) [Elaeodendron orientale][more]
gi|317046216|ref|YP_004072505.1|4.4e-2279.22Ycf2 protein [Corynocarpus laevigata][more]
gi|511943716|ref|YP_008082776.1|4.4e-2279.22hypothetical chloroplast RF21 [Prinsepia utilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0005524 ATP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G008180.1CmoCh05G008180.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33078FAMILY NOT NAMEDcoord: 1..77
score: 3.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None